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authorRicardo Wurmus <rekado@elephly.net>2021-04-23 15:05:31 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-04-23 15:53:51 +0200
commitc9371b698db76fc0ff9133820c6d795280298ed2 (patch)
treef42d345dff1f988c4f82c6ce901a00e4ff6c0783 /gnu/packages/bioinformatics.scm
parentc15d31ac10be3be470c2a528a2948f5fd262cd08 (diff)
downloadguix-c9371b698db76fc0ff9133820c6d795280298ed2.tar
guix-c9371b698db76fc0ff9133820c6d795280298ed2.tar.gz
gnu: Add r-shinycell.
* gnu/packages/bioinformatics.scm (r-shinycell): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm37
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cf09fc3add..a3dd76c3bd 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7250,6 +7250,43 @@ clustering analysis, differential analysis, motif inference and exploration of
single cell ATAC-seq sequencing data.")
(license license:gpl3)))
+(define-public r-shinycell
+ (let ((commit
+ "aecbd56e66802f28e397f5ae1f19403aadd12163")
+ (revision "1"))
+ (package
+ (name "r-shinycell")
+ (version (git-version "2.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/SGDDNB/ShinyCell")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "13jn2ikmvljnzayk485g1mmq5abcp9m1b8n1djdb1agmn83zaki5"))))
+ (properties `((upstream-name . "ShinyCell")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-glue" ,r-glue)
+ ("r-gridextra" ,r-gridextra)
+ ("r-hdf5r" ,r-hdf5r)
+ ("r-matrix" ,r-matrix)
+ ("r-r-utils" ,r-r-utils)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-readr" ,r-readr)
+ ("r-reticulate" ,r-reticulate)))
+ (home-page "https://github.com/SGDDNB/ShinyCell")
+ (synopsis "Shiny interactive web apps for single-cell data")
+ (description
+ "This package provides Shiny apps for interactive exploration of
+single-cell data.")
+ (license license:gpl3))))
+
(define-public r-archr
(let ((commit "46b519ffb6f73edf132497ac31650d19ef055dc1")
(revision "1"))