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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-01-06 14:05:58 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-01-06 14:05:58 +0100 |
| commit | 067c8a7445fbe030d0f4480282e6a6beb2c1997f (patch) | |
| tree | 588d1c807fc51a921d0bc250e70ec2e7d9da3336 /gnu/packages/bioinformatics.scm | |
| parent | 0070e52ade4d521e21ecf8da10a3485aa2615dc3 (diff) | |
| download | guix-067c8a7445fbe030d0f4480282e6a6beb2c1997f.tar guix-067c8a7445fbe030d0f4480282e6a6beb2c1997f.tar.gz | |
gnu: filtlong: Use gexp.
* gnu/packages/bioinformatics.scm (filtlong)[arguments]: Use gexp.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 45 |
1 files changed, 22 insertions, 23 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4bc4dde36c..1dd847f369 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14321,29 +14321,28 @@ phase + query phase).") (base32 "1xr92r820x8qlkcr3b57iw223yq8vjgyi42jr79w2xgw47qzr575")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; no check target - #:phases - (modify-phases %standard-phases - (delete 'configure) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin")) - (scripts (string-append out "/share/filtlong/scripts"))) - (install-file "bin/filtlong" bin) - (install-file "scripts/histogram.py" scripts) - (install-file "scripts/read_info_histograms.sh" scripts)))) - (add-after 'install 'wrap-program - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (path (getenv "GUIX_PYTHONPATH"))) - (wrap-program (string-append out - "/share/filtlong/scripts/histogram.py") - `("GUIX_PYTHONPATH" ":" prefix (,path)))))) - (add-before 'check 'patch-tests - (lambda _ - (substitute* "scripts/read_info_histograms.sh" - (("awk") (which "gawk")))))))) + (list + #:tests? #f ; no check target + #:phases + #~(modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda _ + (let ((bin (string-append #$output "/bin")) + (scripts (string-append #$output "/share/filtlong/scripts"))) + (install-file "bin/filtlong" bin) + (install-file "scripts/histogram.py" scripts) + (install-file "scripts/read_info_histograms.sh" scripts)))) + (add-after 'install 'wrap-program + (lambda _ + (let ((path (getenv "GUIX_PYTHONPATH"))) + (wrap-program (string-append #$output + "/share/filtlong/scripts/histogram.py") + `("GUIX_PYTHONPATH" ":" prefix (,path)))))) + (add-before 'check 'patch-tests + (lambda _ + (substitute* "scripts/read_info_histograms.sh" + (("awk") (which "gawk")))))))) (inputs (list gawk ;for read_info_histograms.sh python-2 ;required for histogram.py |