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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:42:39 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:42:39 +0100
commitd56df35a259dd1faea7780f4ceff84a9c96c699b (patch)
tree88007889408654a1fb46ece3dca41dc9f83284a5 /gnu/packages/bioconductor.scm
parentf8780e96ff9c4d1439f679aff0df559d97d673dc (diff)
downloadguix-d56df35a259dd1faea7780f4ceff84a9c96c699b.tar
guix-d56df35a259dd1faea7780f4ceff84a9c96c699b.tar.gz
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f08e1a87c4..7079092335 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -438,6 +438,32 @@ annotations for the genome of the model fruit fly Drosophila melanogaster.")
based on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
+(define-public r-org-hs-eg-db
+ (package
+ (name "r-org-hs-eg-db")
+ (version "3.7.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "org.Hs.eg.db_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"))))
+ (properties
+ `((upstream-name . "org.Hs.eg.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/")
+ (synopsis "Genome wide annotation for Human")
+ (description
+ "This package contains genome-wide annotations for Human, primarily based
+on mapping using Entrez Gene identifiers.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-hsapiens-ucsc-hg19
(package
(name "r-bsgenome-hsapiens-ucsc-hg19")