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| author | zimoun <zimon.toutoune@gmail.com> | 2019-07-24 20:21:56 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-07-24 23:05:39 +0200 |
| commit | ad8f46c69efd24915d380dba663c9f24746de1fc (patch) | |
| tree | 8e06839a9c1d4d31179021d97f8e1fe60710edfc | |
| parent | 6deb08a35933714a1713406c2e81522bfb2c3401 (diff) | |
| download | guix-ad8f46c69efd24915d380dba663c9f24746de1fc.tar guix-ad8f46c69efd24915d380dba663c9f24746de1fc.tar.gz | |
gnu: Add r-all.
* gnu/packages/bioconductor.scm (r-all): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e5a2d66b2d..649b64a4d7 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -865,6 +865,34 @@ which were then sequenced to a depth of ~4 million reads per library, resulting in a complete gene expression profile for each cell.") (license license:artistic2.0))) +(define-public r-all + (package + (name "r-all") + (version "1.26.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/experiment/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/experiment/src/contrib/" + "ALL_" version ".tar.gz")) + (sha256 + (base32 + "1z7kpjw4ndj6fkxwvhqf3gawhrn26ksrlns7j2c78qzxqmjndik9")))) + (properties `((upstream-name . "ALL"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase))) + (home-page "https://bioconductor.org/packages/ALL") + (synopsis "Acute Lymphoblastic Leukemia data from the Ritz laboratory") + (description + "The data consist of microarrays from 128 different individuals with +@dfn{acute lymphoblastic leukemia} (ALL). A number of additional covariates +are available. The data have been normalized (using rma) and it is the +jointly normalized data that are available here. The data are presented in +the form of an @code{exprSet} object.") + (license license:artistic2.0))) + ;;; Packages |