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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-17 16:24:15 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-07-01 10:28:22 +0200 |
| commit | ec23d7caa871471ad9425a21b34e1f9692a524d4 (patch) | |
| tree | fb25d2b0b6da0a6f1ed66cf1e430be0adf6c62c2 | |
| parent | 3109d4a30ec54b74a8bb844a89181c074958279e (diff) | |
| download | guix-ec23d7caa871471ad9425a21b34e1f9692a524d4.tar guix-ec23d7caa871471ad9425a21b34e1f9692a524d4.tar.gz | |
gnu: Add r-antiprofiles.
* gnu/packages/bioconductor.scm (r-antiprofiles): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8aa0b5bd85..adf0542410 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2197,6 +2197,32 @@ as @code{genesInRange()}, @code{geneToExon()}, @code{exonDetails()}, etc. Functions to plot gene architecture and BAM file data are also provided.") (license license:gpl2))) +(define-public r-antiprofiles + (package + (name "r-antiprofiles") + (version "1.36.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "antiProfiles" version)) + (sha256 + (base32 + "1277kg5xpyb2yriyjy18p437q5lj22h4al7z7pygkzxzywxv9g40")))) + (properties `((upstream-name . "antiProfiles"))) + (build-system r-build-system) + (propagated-inputs + (list r-locfit + r-matrixstats)) + (home-page "https://github.com/HCBravoLab/antiProfiles") + (synopsis "Implementation of gene expression anti-profiles") + (description + "This package implements the gene expression anti-profiles method. +Anti-profiles are a new approach for developing cancer genomic signatures that +specifically take advantage of gene expression heterogeneity. They explicitly +model increased gene expression variability in cancer to define robust and +reproducible gene expression signatures capable of accurately distinguishing +tumor samples from healthy controls.") + (license license:artistic2.0))) + (define-public r-biocversion (package (name "r-biocversion") |