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authorRicardo Wurmus <rekado@elephly.net>2023-05-02 10:14:04 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-05-02 10:14:37 +0200
commit9bb428ad681bd2f779dd52db41d0f4112efab912 (patch)
tree5669c48ff980859f9bc782d482b89197afb35e84
parent62ed97c07d83f58fb051a77b6d3b79b54e579e09 (diff)
downloadguix-9bb428ad681bd2f779dd52db41d0f4112efab912.tar
guix-9bb428ad681bd2f779dd52db41d0f4112efab912.tar.gz
gnu: Add r-microbiomestat.
* gnu/packages/bioconductor.scm (r-microbiomestat): New variable.
-rw-r--r--gnu/packages/bioconductor.scm34
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 31bd4e24b0..75605945ae 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12174,6 +12174,40 @@ format and expands the available toolkit in order to facilitate the
standardization of the analyses and the development of best practices.")
(license license:bsd-2)))
+;; This is a CRAN package but it depends on phyloseq, which is from
+;; Bioconductor.
+(define-public r-microbiomestat
+ (package
+ (name "r-microbiomestat")
+ (version "1.1")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "MicrobiomeStat" version))
+ (sha256
+ (base32
+ "1j5sar85a1gksc83pc4ypxwb0c7whxglx069zarphrgqfazcr1m4"))))
+ (properties `((upstream-name . "MicrobiomeStat")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-foreach
+ r-ggplot2
+ r-ggrepel
+ r-lmertest
+ r-mass
+ r-matrix
+ r-matrixstats
+ r-modeest
+ r-phyloseq
+ r-statmod))
+ (home-page "https://cran.r-project.org/package=MicrobiomeStat")
+ (synopsis "Statistical methods for microbiome compositional data")
+ (description
+ "This package provides a suite of methods for powerful and robust
+microbiome data analysis addressing zero-inflation, phylogenetic structure and
+compositional effects. The methods can be applied to the analysis of
+other (high-dimensional) compositional data arising from sequencing
+experiments.")
+ (license license:gpl3)))
+
(define-public r-milor
(package
(name "r-milor")