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authorRicardo Wurmus <rekado@elephly.net>2018-10-25 05:16:54 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-10-25 05:17:42 +0200
commit413944234cf736f6e180a3c075df7e8229727d8f (patch)
tree367afc3f5faa91d15b0a213a86747de63cded59a
parentaa4bde0b3a8e012124fabdfd0c74a76abd24597d (diff)
downloadguix-413944234cf736f6e180a3c075df7e8229727d8f.tar
guix-413944234cf736f6e180a3c075df7e8229727d8f.tar.gz
gnu: Add r-glmmtmb.
* gnu/packages/cran.scm (r-glmmtmb): New variable.
-rw-r--r--gnu/packages/cran.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 70cba10132..4cd11bfd24 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6529,3 +6529,35 @@ most functions lies on summary statistics or fit measures for regression
models, including generalized linear models, mixed effects models and Bayesian
models.")
(license license:gpl3)))
+
+(define-public r-glmmtmb
+ (package
+ (name "r-glmmtmb")
+ (version "0.2.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "glmmTMB" version))
+ (sha256
+ (base32
+ "1clpkjlmsjmn3m1z5jqv8cgw6bvpqsy4nx6k947r0jya017ny5y5"))))
+ (properties `((upstream-name . "glmmTMB")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-lme4" ,r-lme4)
+ ("r-matrix" ,r-matrix)
+ ("r-nlme" ,r-nlme)
+ ("r-rcppeigen" ,r-rcppeigen)
+ ("r-tmb" ,r-tmb)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/glmmTMB")
+ (synopsis "Generalized linear mixed models")
+ (description
+ "Fit linear and generalized linear mixed models with various extensions,
+including zero-inflation. The models are fitted using maximum likelihood
+estimation via the Template Model Builder. Random effects are assumed to be
+Gaussian on the scale of the linear predictor and are integrated out using the
+Laplace approximation. Gradients are calculated using automatic
+differentiation.")
+ (license license:agpl3+)))