;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2017 John Darrington ;;; Copyright © 2017 Ricardo Wurmus ;;; Copyright © 2014 Ludovic Courtès ;;; Copyright © 2014 Mark H Weaver ;;; Copyright © 2016 Eric Bavier ;;; Copyright © 2018 Tobias Geerinckx-Rice ;;; Copyright © 2018 Björn Höfling ;;; ;;; This file is part of GNU Guix. ;;; ;;; GNU Guix is free software; you can redistribute it and/or modify it ;;; under the terms of the GNU General Public License as published by ;;; the Free Software Foundation; either version 3 of the License, or (at ;;; your option) any later version. ;;; ;;; GNU Guix is distributed in the hope that it will be useful, but ;;; WITHOUT ANY WARRANTY; without even the implied warranty of ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ;;; GNU General Public License for more details. ;;; ;;; You should have received a copy of the GNU General Public License ;;; along with GNU Guix. If not, see . (define-module (gnu packages image-processing) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix utils) #:use-module (guix download) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (gnu packages) #:use-module (gnu packages algebra) #:use-module (gnu packages boost) #:use-module (gnu packages compression) #:use-module (gnu packages documentation) #:use-module (gnu packages fontutils) #:use-module (gnu packages ghostscript) #:use-module (gnu packages gl) #:use-module (gnu packages glib) #:use-module (gnu packages gnome) #:use-module (gnu packages graphics) #:use-module (gnu packages graphviz) #:use-module (gnu packages gstreamer) #:use-module (gnu packages gtk) #:use-module (gnu packages image) #:use-module (gnu packages imagemagick) #:use-module (gnu packages maths) #:use-module (gnu packages pdf) #:use-module (gnu packages perl) #:use-module (gnu packages photo) #:use-module (gnu packages pkg-config) #:use-module (gnu packages protobuf) #:use-module (gnu packages python) #:use-module (gnu packages serialization) #:use-module (gnu packages video) #:use-module (gnu packages xiph) #:use-module (gnu packages xml) #:use-module (gnu packages xorg)) ;; We use the latest snapshot of this package because the latest release is ;; from 2011 and has known vulnerabilities that cannot easily be fixed by ;; applying patches. (define-public dcmtk (package (name "dcmtk") (version "3.6.1_20170228") (source (origin (method url-fetch) (uri (string-append "ftp://dicom.offis.de/pub/dicom/offis/" "software/dcmtk/snapshot/dcmtk-" version ".tar.gz")) (sha256 (base32 "04cwfx8yrscqcd59mxk2fh6314ckayi9cp68iql5a57pf2pg5qld")))) (build-system gnu-build-system) (inputs `(("libtiff" ,libtiff) ("libpng" ,libpng) ("doxygen" ,doxygen) ("zlib" ,zlib))) (native-inputs `(("perl" ,perl))) (home-page "http://dcmtk.org") (synopsis "Libraries and programs implementing parts of the DICOM standard") (description "DCMTK is a collection of libraries and applications implementing large parts the DICOM standard. It includes software for examining, constructing and converting DICOM image files, handling offline media, sending and receiving images over a network connection, as well as demonstrative image storage and worklist servers.") (license (license:fsf-free "file://COPYRIGHT" "A union of the Apache 2.0 licence and various non-copyleft licences similar to the Modified BSD licence.")))) (define-public mia (package (name "mia") (version "2.4.6") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/mia/mia/" (version-major+minor version) "/mia-" version ".tar.xz")) (sha256 (base32 "0j4nd5z7i3v199jh7hqqhwd4g7snchizkc7rhzanpvngqg91m1pb")))) (build-system cmake-build-system) (arguments `(#:configure-flags (list "-DMIA_CREATE_NIPYPE_INTERFACES=0" "-DCMAKE_CXX_FLAGS=-fpermissive"))) (inputs `(("boost" ,boost) ("dcmtk" ,dcmtk) ("doxygen" ,doxygen) ("eigen" ,eigen) ("fftw" ,fftw) ("fftwf" ,fftwf) ("gsl" ,gsl) ("gts" ,gts) ("hdf5" ,hdf5) ("itpp" ,itpp) ("libjpeg" ,libjpeg) ("libpng" ,libpng) ("libtiff" ,libtiff) ("libxml" ,libxml2) ("libxml++" ,libxml++) ("maxflow" ,maxflow) ("niftilib" ,niftilib) ("nlopt" ,nlopt) ("openexr" ,openexr) ("python-lxml" ,python2-lxml) ("vtk" ,vtk))) (native-inputs `(("pkg-config" ,pkg-config) ("python" ,python-2))) (home-page "http://mia.sourceforge.net") (synopsis "Toolkit for gray scale medical image analysis") (description "MIA provides a combination of command line tools, plug-ins, and libraries that make it possible run image processing tasks interactively in a command shell and to prototype using the shell's scripting language. It is built around a plug-in structure that makes it easy to add functionality without compromising the original code base and it makes use of a wide variety of external libraries that provide additional functionality.") (license license:gpl3+))) (define-public vtk (package (name "vtk") (version "7.1.0") (source (origin (method url-fetch) (uri (string-append "http://www.vtk.org/files/release/" (version-major+minor version) "/VTK-" version ".tar.gz")) (sha256 (base32 "0yj96z58haan77gzilnqp7xpf8hg5jk11a3jx55p2ksd400s0gjz")))) (build-system cmake-build-system) (arguments '(#:build-type "Release" ;Build without '-g' to save space. ;; -DVTK_USE_SYSTEM_NETCDF:BOOL=TRUE requires netcdf_cxx #:configure-flags '("-DVTK_USE_SYSTEM_EXPAT:BOOL=TRUE" "-DVTK_USE_SYSTEM_FREETYPE:BOOL=TRUE" "-DVTK_USE_SYSTEM_HDF5:BOOL=TRUE" "-DVTK_USE_SYSTEM_JPEG:BOOL=TRUE" "-DVTK_USE_SYSTEM_JSONCPP:BOOL=TRUE" "-DVTK_USE_SYSTEM_LIBXML2:BOOL=TRUE" "-DVTK_USE_SYSTEM_OGGTHEORA:BOOL=TRUE" "-DVTK_USE_SYSTEM_PNG:BOOL=TRUE" "-DVTK_USE_SYSTEM_TIFF:BOOL=TRUE" "-DVTK_USE_SYSTEM_ZLIB:BOOL=TRUE") #:tests? #f)) ;XXX: no "test" target (inputs `(("libXt" ,libxt) ("xorgproto" ,xorgproto) ("libX11" ,libx11) ("libxml2" ,libxml2) ("mesa" ,mesa) ("glu" ,glu) ("expat" ,expat) ("freetype" ,freetype) ("hdf5" ,hdf5) ("jpeg" ,libjpeg) ("jsoncpp" ,jsoncpp) ("libogg" ,libogg) ("libtheora" ,libtheora) ("png" ,libpng) ("tiff" ,libtiff) ("zlib" ,zlib))) (home-page "http://www.vtk.org/") (synopsis "Libraries for 3D computer graphics") (description "The Visualization Toolkit (VTK) is a C++ library for 3D computer graphics, image processing and visualization. It supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation. VTK has an extensive information visualization framework, has a suite of 3D interaction widgets, supports parallel processing, and integrates with various databases on GUI toolkits such as Qt and Tk.") (license license:bsd-3))) (define-public opencv (package (name "opencv") (version "3.4.3") (source (origin (method url-fetch) (uri (string-append "https://github.com/opencv/opencv/archive/" version ".zip")) (file-name (string-append name "-" version ".zip")) (sha256 (base32 "0pycx1pz8lj794q32mlalyc3ijqxwsyin65r26nh4yc0p71xiirp")) (modules '((guix build utils))) (snippet '(begin ;; Remove external libraries. We have all available in Guix: (delete-file-recursively "3rdparty") ;; Milky icon set is non-free: (delete-file-recursively "modules/highgui/src/files_Qt/Milky") ;; Some jars found: (for-each delete-file '("modules/java/test/pure_test/lib/junit-4.11.jar" "samples/java/sbt/sbt/sbt-launch.jar")))))) (build-system cmake-build-system) (arguments `(#:configure-flags (list "-DWITH_IPP=OFF" "-DWITH_ITT=OFF" ;; CPU-Features: ;; See cmake/OpenCVCompilerOptimizations.cmake ;; (CPU_ALL_OPTIMIZATIONS) for a list of all optimizations ;; BASELINE is the minimum optimization all CPUs must support ;; ;; DISPATCH is the list of optional dispatches "-DCPU_BASELINE=SSE2, NEON" "-DCPU_DISPATCH=SSE3,SSSE3,SSE4_1,SSE4_2,AVX,AVX2" "-DCPU_DISPATCH_REQUIRE=SSE3,SSSE3,SSE4_1,SSE4_2,AVX,AVX2" "-DBUILD_PERF_TESTS=OFF" "-D BUILD_TESTS=ON" (string-append "-DOPENCV_EXTRA_MODULES_PATH=" "/tmp/guix-build-opencv-" ,version ".drv-0" "/opencv-contrib/opencv_contrib-" ,version "/modules") ;;Define test data: (string-append "-DOPENCV_TEST_DATA_PATH=" "/tmp/guix-build-opencv-" ,version ".drv-0" ;;"/opencv-3.4.0" "/opencv-extra/opencv_extra-" ,version "/testdata") ;; Is ON by default and would try to rebuild 3rd-party protobuf, ;; which we had removed, which would lead to an error: "-DBUILD_PROTOBUF=OFF" ;; Rebuild protobuf files, because we have a slightly different ;; version than the included one. If we would not update, we ;; would get a compile error later: "-DPROTOBUF_UPDATE_FILES=ON" ;; xfeatures2d disabled, because it downloads extra binaries from ;; https://github.com/opencv/opencv_3rdparty ;; defined in xfeatures2d/cmake/download_{vgg|bootdesc}.cmake ;; Cmp this bug entry: ;; https://github.com/opencv/opencv_contrib/issues/1131 "-DBUILD_opencv_xfeatures2d=OFF") #:phases (modify-phases %standard-phases (add-after 'unpack 'disable-broken-tests (lambda _ ;; These tests fails with: ;; vtkXOpenGLRenderWindow (0x723990): Could not find a decent config ;; I think we have no OpenGL support with the Xvfb. (substitute* '("modules/viz/test/test_tutorial3.cpp" "modules/viz/test/test_main.cpp" "modules/viz/test/tests_simple.cpp" "modules/viz/test/test_viz3d.cpp") (("(TEST\\(Viz, )([a-z].*\\).*)" all pre post) (string-append pre "DISABLED_" post))) ;; This one fails with "unknown file: Failure" ;; But I couldn't figure out which file was missing: (substitute* (list (string-append "../opencv-contrib/opencv_contrib-" ,version "/modules/face/test/test_face_align.cpp")) (("(TEST\\(CV_Face_FacemarkKazemi, )(can_detect_landmarks\\).*)" all pre post) (string-append pre "DISABLED_" post))) ;; Failure reason: Bad accuracy ;; Incorrect count of accurate poses [2nd case]: 90.000000 / 94.000000 (substitute* (list (string-append "../opencv-contrib/opencv_contrib-" ,version "/modules/rgbd/test/test_odometry.cpp")) (("(TEST\\(RGBD_Odometry_Rgbd, )(algorithmic\\).*)" all pre post) (string-append pre "DISABLED_" post))) #t)) ;; Idea copied from ldc.scm (ldc-bootstrap): (add-after 'unpack 'unpack-submodule-sources (lambda* (#:key inputs #:allow-other-keys) (mkdir "../opencv-extra") (mkdir "../opencv-contrib") (let ((unpack (lambda (source target) (with-directory-excursion target (apply invoke "unzip" (list (assoc-ref inputs source))))))) (unpack "opencv-extra" "../opencv-extra") (unpack "opencv-contrib" "../opencv-contrib")))) (add-after 'set-paths 'add-ilmbase-include-path (lambda* (#:key inputs #:allow-other-keys) ;; OpenEXR propagates ilmbase, but its include files do not appear ;; in the CPATH, so we need to add "$ilmbase/include/OpenEXR/" to ;; the CPATH to satisfy the dependency on "ImathVec.h". (setenv "CPATH" (string-append (assoc-ref inputs "ilmbase") "/include/OpenEXR" ":" (or (getenv "CPATH") ""))) #t)) (add-before 'check 'start-xserver (lambda* (#:key inputs #:allow-other-keys) (let ((xorg-server (assoc-ref inputs "xorg-server")) (disp ":1")) (setenv "HOME" (getcwd)) (setenv "DISPLAY" disp) ;; There must be a running X server and make check doesn't start one. ;; Therefore we must do it. (zero? (system (format #f "~a/bin/Xvfb ~a &" xorg-server disp))))))))) (native-inputs `(("unzip" ,unzip) ("pkg-config" ,pkg-config) ("xorg-server" ,xorg-server) ; For running the tests ("opencv-extra" ,(origin (method url-fetch) (uri (string-append "https://codeload.github.com/" "opencv/opencv_extra/zip/" version)) (file-name (string-append "opencv-extra-" version ".zip")) (sha256 (base32 "0yd1vidzbg6himxyh4yzivywijg8548kfmcn421khabnipm7l74y")))) ("opencv-contrib" ,(origin (method url-fetch) (uri (string-append "https://codeload.github.com/" "opencv/opencv_contrib/zip/" version)) (file-name (string-append "opencv-contrib-" version ".zip")) (sha256 (base32 "0j0ci6ia1qwklp9hq07ypl0vkngj1wrgh6n98n657m5d0pyp4m0g")))))) (inputs `(("libjpeg" ,libjpeg) ("libpng" ,libpng) ("jasper" ,jasper) ;; ffmpeg 4.0 causes core dumps in tests. ("ffmpeg" ,ffmpeg-3.4) ("libtiff" ,libtiff) ("hdf5" ,hdf5) ("libgphoto2" ,libgphoto2) ("libwebp" ,libwebp) ("zlib" ,zlib) ("gtkglext" ,gtkglext) ("openexr" ,openexr) ("ilmbase" ,ilmbase) ("gtk+" ,gtk+-2) ("python-numpy" ,python-numpy) ("protobuf" ,protobuf) ("vtk" ,vtk) ("python" ,python))) ;; These three CVEs are not a problem of OpenCV, see: ;; https://github.com/opencv/opencv/issues/10998 (properties '((lint-hidden-cve . ("CVE-2018-7712" "CVE-2018-7713" "CVE-2018-7714")))) (synopsis "Computer vision library") (description "OpenCV is a library aimed at real-time computer vision, including several hundred computer vision algorithms. It can be used to do things like: @itemize @item image and video input and output @item image and video processing @item displaying @item feature recognition @item segmentation @item facial recognition @item stereo vision @item structure from motion @item augmented reality @item machine learning @end itemize\n") (home-page "https://opencv.org/") (license license:bsd-3))) (define-public vips (package (name "vips") (version "8.7.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/libvips/libvips/releases/download/v" version "/vips-" version ".tar.gz")) (sha256 (base32 "1w3b90pdw7nj2p0gb4f96h6zhmga513f968ldfhz1rkhg7y81c0s")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) ("gobject-introspection" ,gobject-introspection))) (inputs `(("glib" ,glib) ("libjpeg" ,libjpeg) ("libpng" ,libpng) ("librsvg" ,librsvg) ("libtiff" ,libtiff) ("libexif" ,libexif) ("giflib" ,giflib) ("libgsf" ,libgsf) ("fftw" ,fftw) ("poppler" ,poppler) ("pango" ,pango) ("lcms" ,lcms) ("matio" ,matio) ("libwebp" ,libwebp) ("niftilib" ,niftilib) ("openexr" ,openexr) ("orc" ,orc) ("imagemagick" ,imagemagick) ("libxml2" ,libxml2) ("expat" ,expat) ("hdf5" ,hdf5))) (home-page "https://libvips.github.io/libvips/") (synopsis "Image processing system") (description "vips is a demand-driven, horizontally threaded image processing library.") (license license:lgpl2.1+)))