From bfe3c6857251c1fff24317da602b9cd762c1c112 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 27 Mar 2015 10:09:10 +0100
Subject: gnu: Add clustal omega.

* gnu/packages/bioinformatics.scm (clustal-omega): New variable.
---
 gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3725f3ffe5..9813d07e9c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -33,6 +33,7 @@
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages popt)
   #:use-module (gnu packages python)
   #:use-module (gnu packages tbb)
   #:use-module (gnu packages vim)
@@ -360,6 +361,30 @@ multiple sequence alignments.")
      "CLIPper is a tool to define peaks in CLIP-seq datasets.")
     (license license:gpl2)))
 
+(define-public clustal-omega
+  (package
+    (name "clustal-omega")
+    (version "1.2.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "http://www.clustal.org/omega/clustal-omega-"
+                    version ".tar.gz"))
+              (sha256
+               (base32
+                "02ibkx0m0iwz8nscg998bh41gg251y56cgh86bvyrii5m8kjgwqf"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("argtable" ,argtable)))
+    (home-page "http://www.clustal.org/omega/")
+    (synopsis "Multiple sequence aligner for protein and DNA/RNA")
+    (description
+     "Clustal-Omega is a general purpose multiple sequence alignment (MSA)
+program for protein and DNA/RNA.  It produces high quality MSAs and is capable
+of handling data-sets of hundreds of thousands of sequences in reasonable
+time.")
+    (license license:gpl2+)))
+
 (define-public crossmap
   (package
     (name "crossmap")
-- 
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