From 177e3dfe8806f70ade828a9462f969108e97f40d Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sat, 18 Jan 2020 22:03:48 +0100 Subject: gnu: r-tcltk2: Use HTTPS home page. * gnu/packages/cran.scm (r-tcltk2)[home-page]: Use HTTPS. --- gnu/packages/cran.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fd1cc7f358..21a1eebb11 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16771,7 +16771,7 @@ experienced.") (inputs `(("tcl" ,tcl) ("tk" ,tk))) - (home-page "http://www.sciviews.org/SciViews-R") + (home-page "https://www.sciviews.org/SciViews-R") (synopsis "Tcl/Tk additions") (description "This package provides a series of additional Tcl commands and Tk widgets -- cgit v1.2.3 From eef6623e4c694f4c2c71c91cb10a0bb575796cad Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sat, 18 Jan 2020 22:16:14 +0100 Subject: gnu: r-sdmtools: Use HTTPS home page. * gnu/packages/cran.scm (r-sdmtools)[home-page]: Use HTTPS. --- gnu/packages/cran.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 21a1eebb11..4e830fee11 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3717,7 +3717,7 @@ normalizations, minimum variance matching, and so on.") (properties `((upstream-name . "SDMTools"))) (build-system r-build-system) (propagated-inputs `(("r-r-utils" ,r-r-utils))) - (home-page "http://www.rforge.net/SDMTools/") + (home-page "https://www.rforge.net/SDMTools/") (synopsis "Species distribution modelling tools") (description "This package provides a set of tools for post processing the outcomes of species distribution modeling exercises. It includes novel -- cgit v1.2.3 From ed5e514dff4792f6541a7a4f33c57f87c2eebb6c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:02:52 +0100 Subject: gnu: r-callr: Update to 3.4.2. * gnu/packages/cran.scm (r-callr): Update to 3.4.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4e830fee11..86d37e52f6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -423,14 +423,14 @@ such as copy/paste from an R session.") (define-public r-callr (package (name "r-callr") - (version "3.4.1") + (version "3.4.2") (source (origin (method url-fetch) (uri (cran-uri "callr" version)) (sha256 (base32 - "0nyba0knzd44zz2xmr7zd9qh3rny0q8msysxf49843d9rlyv6y70")))) + "0bdlp0labwyfl36jqslj2g7zmw7zwr58v9gam435kiblhjimb8fc")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6) -- cgit v1.2.3 From 256761021c47e9b514c8dbf89a2ab140916370c1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:03:05 +0100 Subject: gnu: r-jsonlite: Update to 1.6.1. * gnu/packages/cran.scm (r-jsonlite): Update to 1.6.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 86d37e52f6..656b28e1c5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -529,13 +529,13 @@ particularly easy to create complete web applications using httpuv alone.") (define-public r-jsonlite (package (name "r-jsonlite") - (version "1.6") + (version "1.6.1") (source (origin (method url-fetch) (uri (cran-uri "jsonlite" version)) (sha256 (base32 - "0lyvhnr6n57h3a89bvipii7x17nvfaycm9j5j50bfrlr48jv9ic8")))) + "0xrki07wc17bkmhz0h7jay784j1sls2i9bf1mfpj6yl59791v4kl")))) (build-system r-build-system) (home-page "https://arxiv.org/abs/1403.2805") (synopsis "Robust, high performance JSON parser and generator for R") -- cgit v1.2.3 From 437825dd0acd36e965c1451f7c2bb2d5b3091387 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:04:29 +0100 Subject: gnu: r-mapproj: Update to 1.2.7. * gnu/packages/cran.scm (r-mapproj): Update to 1.2.7. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 656b28e1c5..71995aa258 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1271,14 +1271,14 @@ Projection code and larger maps are in separate packages (@code{mapproj} and (define-public r-mapproj (package (name "r-mapproj") - (version "1.2.6") + (version "1.2.7") (source (origin (method url-fetch) (uri (cran-uri "mapproj" version)) (sha256 (base32 - "1rggww8cbwv0vzlj5afzhbsbngg4bzj5znbkz7wmxsbshfbsm9b2")))) + "0nscsfq8md6ri9258xz57c3dj81wdl6kdwf4a9qcrwwbn20i427h")))) (build-system r-build-system) (propagated-inputs `(("r-maps" ,r-maps))) (home-page "https://cran.r-project.org/web/packages/mapproj") -- cgit v1.2.3 From a7474115bf11a540fc4f8afcd9eb580c955dc609 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:04:51 +0100 Subject: gnu: r-rgooglemaps: Update to 1.4.5.3. * gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.3. [propagated-inputs]: Add r-sp. --- gnu/packages/cran.scm | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 71995aa258..bedb5e6fdb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1293,17 +1293,19 @@ coordinates.") (define-public r-rgooglemaps (package (name "r-rgooglemaps") - (version "1.4.5.2") + (version "1.4.5.3") (source (origin (method url-fetch) (uri (cran-uri "RgoogleMaps" version)) (sha256 (base32 - "1y2dinxmzx6mg6ynpk2q7f4k4rxjm66my185gafdcvpc4rl7svs7")))) + "02v8k0bw70q4qwx4lcdy8p25q7n3ql2ll46lfpqllxa1p26svmfi")))) (properties `((upstream-name . "RgoogleMaps"))) (build-system r-build-system) - (propagated-inputs `(("r-png" ,r-png))) + (propagated-inputs + `(("r-png" ,r-png) + ("r-sp" ,r-sp))) (home-page "https://cran.r-project.org/web/packages/RgoogleMaps") (synopsis "Use Google Maps in R") (description "This package serves two purposes: -- cgit v1.2.3 From 01fb586285d66c3f9b8155c6067fe0beb1487c20 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:05:32 +0100 Subject: gnu: r-ps: Update to 1.3.2. * gnu/packages/cran.scm (r-ps): Update to 1.3.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bedb5e6fdb..efa2036223 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1617,13 +1617,13 @@ print, summary, plot, update, etc. (define-public r-ps (package (name "r-ps") - (version "1.3.0") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "ps" version)) (sha256 - (base32 "1lcq7r0q4jb8x6k023zr2ydj2dg925bqqbkhx1phpnyjrk897498")))) + (base32 "0127q6pw9iw8hhcfp231gmdh29nahh2n5jzc38avrzy7yrm4bwl9")))) (build-system r-build-system) (home-page "https://ps.r-lib.org") (synopsis "List, query, and manipulate system processes") -- cgit v1.2.3 From 4332a46ca7b09960210d122c7cc6ab86f684438b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:05:48 +0100 Subject: gnu: r-dendextend: Update to 1.13.3. * gnu/packages/cran.scm (r-dendextend): Update to 1.13.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index efa2036223..ea975aae01 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1916,14 +1916,14 @@ rows, dropping names) to see if the modified versions are identical.") (define-public r-dendextend (package (name "r-dendextend") - (version "1.13.2") + (version "1.13.3") (source (origin (method url-fetch) (uri (cran-uri "dendextend" version)) (sha256 (base32 - "1iclvd9cyckd4djpa87ynm05fk6zl4b4m735za1w4irimc130m3r")))) + "1gx6blw644sx2c4s90672scrwl4bv5xlgnfwbcalkh6nff2sai0h")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) -- cgit v1.2.3 From d05c224c3bfcb4ae5e1d859d8f41baa3143db9a8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:06:04 +0100 Subject: gnu: r-bbmle: Update to 1.0.23.1. * gnu/packages/cran.scm (r-bbmle): Update to 1.0.23.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ea975aae01..b68ad15cdb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2384,14 +2384,14 @@ matrices, a special case of sparse matrices.") (define-public r-bbmle (package (name "r-bbmle") - (version "1.0.22") + (version "1.0.23.1") (source (origin (method url-fetch) (uri (cran-uri "bbmle" version)) (sha256 (base32 - "1idn55w5f3iw4r0ydyww8xyinninw07sxlwfqb565vmdrs87dwl4")))) + "0p3l9shbr2846qmw8n0fyzf4j7gmi08aypl82jml3dwh26q1whk0")))) (build-system r-build-system) (propagated-inputs `(("r-bdsmatrix" ,r-bdsmatrix) -- cgit v1.2.3 From 30e1fff333ae1ba299649ad35accf16630c04457 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:06:18 +0100 Subject: gnu: r-emdbook: Update to 1.3.12. * gnu/packages/cran.scm (r-emdbook): Update to 1.3.12. [propagated-inputs]: Remove r-rcpp. --- gnu/packages/cran.scm | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b68ad15cdb..027241c8c7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2412,22 +2412,21 @@ classes in the @code{stats4} package.") (define-public r-emdbook (package (name "r-emdbook") - (version "1.3.11") + (version "1.3.12") (source (origin (method url-fetch) (uri (cran-uri "emdbook" version)) (sha256 (base32 - "0a515jdzvg87npvrh7md7zp0v5nlz7c2jr7pba5dql6slb0d8j7q")))) + "0ls3zxxlwmdv7zn1v9i1y9zc2sn0hbgmyjvsj7zn3ajsw7wwlih6")))) (build-system r-build-system) (propagated-inputs `(("r-bbmle" ,r-bbmle) ("r-coda" ,r-coda) ("r-lattice" ,r-lattice) ("r-mass" ,r-mass) - ("r-plyr" ,r-plyr) - ("r-rcpp" ,r-rcpp))) + ("r-plyr" ,r-plyr))) (home-page "http://www.math.mcmaster.ca/bolker/emdbook") (synopsis "Support functions and data for \"Ecological Models and Data\"") (description -- cgit v1.2.3 From e92370a10e2434a6366a9a923f43fb386483a346 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:06:43 +0100 Subject: gnu: r-drr: Update to 0.0.4. * gnu/packages/cran.scm (r-drr): Update to 0.0.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 027241c8c7..2688ccf17d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2682,14 +2682,14 @@ variable models.") (define-public r-drr (package (name "r-drr") - (version "0.0.3") + (version "0.0.4") (source (origin (method url-fetch) (uri (cran-uri "DRR" version)) (sha256 (base32 - "1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl")))) + "1y70si1gig4l7jx5jiqsqliyywfsvimkx53x3zh1lc3yj2j6bqwk")))) (properties `((upstream-name . "DRR"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From aed2fe3f775cc5689128219bd08c7f246f0889c1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:06:54 +0100 Subject: gnu: r-rmysql: Update to 0.10.19. * gnu/packages/cran.scm (r-rmysql): Update to 0.10.19. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2688ccf17d..042b42d38f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2799,14 +2799,14 @@ dimensioned arrays.") (define-public r-rmysql (package (name "r-rmysql") - (version "0.10.18") + (version "0.10.19") (source (origin (method url-fetch) (uri (cran-uri "RMySQL" version)) (sha256 (base32 - "0r4626sk78fhlgivr0c7mwg9mj29ayr0iz5x90rdl4d5nc2r6kq4")))) + "0269pfq791qvax69lrwvvzgllyzm3cy3sdp9sakwxzvw5pxk2vhv")))) (properties `((upstream-name . "RMySQL"))) (build-system r-build-system) (inputs -- cgit v1.2.3 From 42e45862ea624815e9f767d9ba4454440850445a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:07:07 +0100 Subject: gnu: r-performanceanalytics: Update to 2.0.4. * gnu/packages/cran.scm (r-performanceanalytics): Update to 2.0.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 042b42d38f..b7f8484c3a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3586,14 +3586,14 @@ simplifying cross-class interoperability.") (define-public r-performanceanalytics (package (name "r-performanceanalytics") - (version "1.5.3") + (version "2.0.4") (source (origin (method url-fetch) (uri (cran-uri "PerformanceAnalytics" version)) (sha256 (base32 - "0jhjldwyxwq7a47zmk5y1jjck7hvq92p8rlgjvdfy51hx2dmlqqd")))) + "0ci26hsj4wnw9g0mh4vrn0cg986cpcpx169rvw6v6rbnjxq718bq")))) (properties `((upstream-name . "PerformanceAnalytics"))) (build-system r-build-system) -- cgit v1.2.3 From fa27e4d2ba8809181af5a44dee07f61634594f25 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:07:18 +0100 Subject: gnu: r-laeken: Update to 0.5.1. * gnu/packages/cran.scm (r-laeken): Update to 0.5.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b7f8484c3a..b740ad49ee 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3616,14 +3616,14 @@ where possible.") (define-public r-laeken (package (name "r-laeken") - (version "0.5.0") + (version "0.5.1") (source (origin (method url-fetch) (uri (cran-uri "laeken" version)) (sha256 (base32 - "1g9r3y7b0gl91hijk9awa8rjk97mqpkxinzq2cgmx0m38ng9ylpa")))) + "199rjkhjjygpr6cjzab87as46acb5npi44m4yycvk7lnd0blma8s")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) -- cgit v1.2.3 From 2097da3e8c1457b8bcf5db90d4493fe93d3b9f5f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:07:28 +0100 Subject: gnu: r-processx: Update to 3.4.2. * gnu/packages/cran.scm (r-processx): Update to 3.4.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b740ad49ee..583ea335c6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3861,14 +3861,14 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.4.1") + (version "3.4.2") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 (base32 - "1g6ipcaxg9y94lyrnbp7kkbqfkcdh1fyrqjjclbjp3x7iysdvazi")))) + "02awswxq6wh3rl99dncw5n6c1xmd0v81xcdp2dfyi6vm6b3gz84l")))) (build-system r-build-system) (propagated-inputs `(("r-ps" ,r-ps) -- cgit v1.2.3 From 2d37face530960a6ec87e9139471df1282279dd7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:07:43 +0100 Subject: gnu: r-np: Update to 0.60-10. * gnu/packages/cran.scm (r-np): Update to 0.60-10. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 583ea335c6..c76c44b917 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4715,14 +4715,14 @@ creation and manipulation of WAVE audio files.") (define-public r-np (package (name "r-np") - (version "0.60-9") + (version "0.60-10") (source (origin (method url-fetch) (uri (cran-uri "np" version)) (sha256 (base32 - "1z4jcpx8bbgwslv42wrphfd1qfq965qjn0kmfxm5f6hbbycahcgy")))) + "06h8k0kdv5s258jr6s08fabvlycrbs7iq34jk2f2hfmqm2y4nyx2")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) -- cgit v1.2.3 From de20b0f2715c24e03e64381cab9ec82278a556d8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:08:00 +0100 Subject: gnu: r-vim: Update to 5.1.0. * gnu/packages/cran.scm (r-vim): Update to 5.1.0. [propagated-inputs]: Add r-magrittr. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c76c44b917..b920ff39df 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5168,14 +5168,14 @@ specific S3-method.") (define-public r-vim (package (name "r-vim") - (version "4.8.0") + (version "5.1.0") (source (origin (method url-fetch) (uri (cran-uri "VIM" version)) (sha256 (base32 - "08x4a4yzgp8adgrv7a3666yma4b60n64mcsnvhzmwdy023f4ysrw")))) + "09600piny3qrxrmh8844iwrvgrhwan1c3nlh6irqy1vjha2w4gb3")))) (properties `((upstream-name . "VIM"))) (build-system r-build-system) (propagated-inputs @@ -5184,6 +5184,7 @@ specific S3-method.") ("r-data-table" ,r-data-table) ("r-e1071" ,r-e1071) ("r-laeken" ,r-laeken) + ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) ("r-nnet" ,r-nnet) ("r-ranger" ,r-ranger) -- cgit v1.2.3 From ab06092c5ee97a7b5eb3e5fbd39a0a79403e7a63 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:08:24 +0100 Subject: gnu: r-renv: Update to 0.9.3. * gnu/packages/cran.scm (r-renv): Update to 0.9.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b920ff39df..60c1a65c85 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5648,14 +5648,14 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") (define-public r-renv (package (name "r-renv") - (version "0.9.2") + (version "0.9.3") (source (origin (method url-fetch) (uri (cran-uri "renv" version)) (sha256 (base32 - "1jwnabryn77s29ybwdfzlnd7c8m05xmi69kp5qbvdxy2gjwjzcdr")))) + "02ayfgbpw4b58148dcxz31anaxncwczmxs1zzkskwj0rzhb2x60r")))) (properties `((upstream-name . "renv"))) (build-system r-build-system) (home-page "https://rstudio.github.io/renv") -- cgit v1.2.3 From 398c8be0a22c1de872b7d5a39ddd0dfb5aa51060 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:08:36 +0100 Subject: gnu: r-learnr: Update to 0.10.1. * gnu/packages/cran.scm (r-learnr): Update to 0.10.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 60c1a65c85..1e87f1e38f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5671,14 +5671,14 @@ reproducible.") (define-public r-learnr (package (name "r-learnr") - (version "0.10.0") + (version "0.10.1") (source (origin (method url-fetch) (uri (cran-uri "learnr" version)) (sha256 (base32 - "0278q9nbkc4nb0rp930kjrwyidf0v7y38d1s187m4f4bs7ha82k6")))) + "08xwmms6x58y3dsfbl9c6d03145hb4ij97nqr1cc9dxxilmr6x31")))) (build-system r-build-system) (propagated-inputs `(("r-checkmate" ,r-checkmate) -- cgit v1.2.3 From d99a211d2d85b4902e4a4eb943c0a3a3bd96ee51 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:08:47 +0100 Subject: gnu: r-ggpubr: Update to 0.2.5. * gnu/packages/cran.scm (r-ggpubr): Update to 0.2.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1e87f1e38f..b5874f2236 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5859,14 +5859,14 @@ and adds the annotation to the plot.") (define-public r-ggpubr (package (name "r-ggpubr") - (version "0.2.4") + (version "0.2.5") (source (origin (method url-fetch) (uri (cran-uri "ggpubr" version)) (sha256 (base32 - "0ln1gh3zlfx5s7zqcpvfdiksq74v1pma5kwkhc6r0riqnjjd19pf")))) + "0kb3hpmnhj4mkbx1kx0kv5y22himr8dijqx7ra0h8hi0pf2l2ha7")))) (build-system r-build-system) (propagated-inputs `(("r-cowplot" ,r-cowplot) -- cgit v1.2.3 From 8151a358126a2d4ec13caaa5118a0e5c17280e3b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:08:59 +0100 Subject: gnu: r-factominer: Update to 2.2. * gnu/packages/cran.scm (r-factominer): Update to 2.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b5874f2236..fafa7be5d6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5940,14 +5940,14 @@ clustering.") (define-public r-factominer (package (name "r-factominer") - (version "2.1") + (version "2.2") (source (origin (method url-fetch) (uri (cran-uri "FactoMineR" version)) (sha256 (base32 - "1b2jsv8vlaynknd7nlra6fdmr56n7678q5s28rqmagbadiqwvj4h")))) + "1hcas9iby95y6xcrf231yrd44s799aaaggb9jd1dcb5nd5vfpzw0")))) (properties `((upstream-name . "FactoMineR"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From cedf4aa48c9becc6581f1aafe0cb9f7473896d19 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:09:10 +0100 Subject: gnu: r-insight: Update to 0.8.1. * gnu/packages/cran.scm (r-insight): Update to 0.8.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fafa7be5d6..8c6156b5fb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6383,14 +6383,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.8.0") + (version "0.8.1") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "1bkcwvjpfy4q4k478x8x42yiqz6v0fk6z6hfp6fli3h63smlmck0")))) + "1y889bydmji3pcq2bdf6xl6ikmd45wbwl53ssvsk05b5ahkyxi76")))) (build-system r-build-system) (home-page "https://easystats.github.io/insight/") (synopsis "Easy access to model information for various model objects") -- cgit v1.2.3 From 544366842bbf1c56a1e0b41949efc5f72fcd2500 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:09:20 +0100 Subject: gnu: r-sjlabelled: Update to 1.1.3. * gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8c6156b5fb..66a3b38ac4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6409,14 +6409,14 @@ information are missing.") (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.1.2") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "1vnx067mxnvz4jzhmpiarda8ln6habzj02qikvkix5piiy85sqcw")))) + "1amq7i9sxf0pkxhskqc53xq5wvc9rdxm7cxyb4b6xh6qsskjnlsj")))) (build-system r-build-system) (propagated-inputs `(("r-haven" ,r-haven) -- cgit v1.2.3 From bfbb33e8f8eee7f128724608c5738e0f34b4fbb5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:09:30 +0100 Subject: gnu: r-flextable: Update to 0.5.8. * gnu/packages/cran.scm (r-flextable): Update to 0.5.8. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 66a3b38ac4..6c32479e8a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6512,14 +6512,14 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.5.6") + (version "0.5.8") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "1f869f2dfqkzhf6yix7xcbs8rn1nwq3sg623h74zg6h1pl6px66w")))) + "1x24rz1r5xin122czg85d7nrkwpaabb60p50m3yrd3dh81vfp0hk")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) -- cgit v1.2.3 From 0048894f33eecb0318e47adf92bb430412eaed6e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:09:42 +0100 Subject: gnu: r-doby: Update to 4.6-4.1. * gnu/packages/cran.scm (r-doby): Update to 4.6-4.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6c32479e8a..e87453941d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6755,14 +6755,14 @@ the work.") (define-public r-doby (package (name "r-doby") - (version "4.6-3") + (version "4.6-4.1") (source (origin (method url-fetch) (uri (cran-uri "doBy" version)) (sha256 (base32 - "1d0d6pwai1g4i5jls0jm9va29ci5hy92n5957608f3fzi1jwy635")))) + "10qyvavk1pc8rf94q5dd0wrlky145f8ia2p0k8clri5imsrikiqx")))) (properties `((upstream-name . "doBy"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From f0e83d68561d3f8fbb7bf24c2b49f34a963ba4b6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:09:53 +0100 Subject: gnu: r-ggformula: Update to 0.9.3. * gnu/packages/cran.scm (r-ggformula): Update to 0.9.3. [propagated-inputs]: Add r-ggforce. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e87453941d..d767b51730 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7188,16 +7188,17 @@ and coverage methods to tune the choice of threshold.") (define-public r-ggformula (package (name "r-ggformula") - (version "0.9.2") + (version "0.9.3") (source (origin (method url-fetch) (uri (cran-uri "ggformula" version)) (sha256 - (base32 "16ycabhnp78fsiv1dc63ccgh9gmpsy2683vbmq0fdzl6w3pd87sr")))) + (base32 "1bpsfp9hx001r91pxfiwgxcn5vw5bl1gclb865wz6g9l0jqjfk2p")))) (build-system r-build-system) (propagated-inputs - `(("r-ggplot2" ,r-ggplot2) + `(("r-ggforce" ,r-ggforce) + ("r-ggplot2" ,r-ggplot2) ("r-ggstance" ,r-ggstance) ("r-magrittr" ,r-magrittr) ("r-mosaiccore" ,r-mosaiccore) -- cgit v1.2.3 From 59987505c031cb868147190ccbccd428c0573f7c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:10:20 +0100 Subject: gnu: r-raster: Update to 3.0-12. * gnu/packages/cran.scm (r-raster): Update to 3.0-12. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d767b51730..bf6e4766ea 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7237,14 +7237,14 @@ used to teach mathematics, statistics, computation and modeling.") (define-public r-raster (package (name "r-raster") - (version "3.0-7") + (version "3.0-12") (source (origin (method url-fetch) (uri (cran-uri "raster" version)) (sha256 (base32 - "0faxv71hlxkblvbi3ps1vfzm3wwi0brwzmpsr5114bddcqyiqkvn")))) + "0rrbsigkqxsdic8fly6nrsc79zsliwvr1x2b4xqpl9d34vr50dvg")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) -- cgit v1.2.3 From 2be78b58a442f0d2dd1fbf272ecb894ada5d0133 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:10:36 +0100 Subject: gnu: r-emmeans: Update to 1.4.4. * gnu/packages/cran.scm (r-emmeans): Update to 1.4.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bf6e4766ea..7b20207443 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8246,14 +8246,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.4.3.01") + (version "1.4.4") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "16v5j31516nbqnj2zhgqvyp5yxd4zcs5zi0aspa5plr2qikvrkmg")))) + "0l1qj6x834fmcvqbj807p7yz7462df925vw91xvg50faqm19d41x")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) -- cgit v1.2.3 From f09351f4c5fd7d594bd40af5c49af01fb9548406 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:10:45 +0100 Subject: gnu: r-sjstats: Update to 0.17.9. * gnu/packages/cran.scm (r-sjstats): Update to 0.17.9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7b20207443..a2e6b41a3f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8404,13 +8404,13 @@ detection, parallelism through BLAS and parallel user templates.") (define-public r-sjstats (package (name "r-sjstats") - (version "0.17.8") + (version "0.17.9") (source (origin (method url-fetch) (uri (cran-uri "sjstats" version)) (sha256 - (base32 "0gagqbcmimlvxhpjkmd3s17mbrz5n937qksca1hvm6kj4rk37hzb")))) + (base32 "0938ac6ixvkif07azd2msa8g3qnn9rabj6jg17almbysl83kg4nm")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) -- cgit v1.2.3 From 0fb7f0accaa101f02e4c632fbf8a532032043bf9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:11:02 +0100 Subject: gnu: r-glmmtmb: Update to 1.0.0. * gnu/packages/cran.scm (r-glmmtmb): Update to 1.0.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a2e6b41a3f..3ebf341721 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8447,14 +8447,14 @@ models.") (define-public r-glmmtmb (package (name "r-glmmtmb") - (version "0.2.3") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "glmmTMB" version)) (sha256 (base32 - "035hkywa37bz555fv6znxd4hfcs5w884365wfnwk4jx5vann4vvb")))) + "1md4yw4kbng953rz1n9g1v2xffk3cxx1qmp0kvbdayg1s82l1rgx")))) (properties `((upstream-name . "glmmTMB"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From e9f6089744e99026b793c948b72c28d67aa89f84 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:11:17 +0100 Subject: gnu: r-bayestestr: Update to 0.5.2. * gnu/packages/cran.scm (r-bayestestr): Update to 0.5.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3ebf341721..9ee5f6c5d7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8479,14 +8479,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.5.1") + (version "0.5.2") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "01kqvky1ndd1q64rzmqh5yfzz36ci8yhy4w16gjnw4c257ikhvd8")))) + "1l0kqw793d8fnk0745fllmqwjwnj9srvqzv4baq5s05ls1gbi2mw")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 155f1886347167c15090bd46d4233a0296992eaf Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:11:40 +0100 Subject: gnu: r-performance: Update to 0.4.4. * gnu/packages/cran.scm (r-performance): Update to 0.4.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9ee5f6c5d7..91e7ace442 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8504,14 +8504,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.4.3") + (version "0.4.4") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "1164585ywbnrcy7an57kifh2gdb6g08z9pxw75ywqdcfyd51i3dz")))) + "18h9y66cpsb3k6xnaya87vnpv2s3chf4bzsc4ym3n5sxhh41j7la")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) -- cgit v1.2.3 From 1f4ec0d578aa572a34e6dd6a000b6e3cd834fcdf Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:11:50 +0100 Subject: gnu: r-ggeffects: Update to 0.14.1. * gnu/packages/cran.scm (r-ggeffects): Update to 0.14.1. [propagated-inputs]: Remove r-magrittr, r-purrr, and r-sjmisc. --- gnu/packages/cran.scm | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 91e7ace442..e8b8e371e3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8531,22 +8531,19 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "0.14.0") + (version "0.14.1") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "1djz82xww86h8f33m2vm40lliicppgyhm6hyn3h6rzrqjrlrsmdw")))) + "07pvs18vlybp96zz1wjr7cwiwi1cvjwkb9ahxzq0vd6adnd6ya59")))) (build-system r-build-system) (propagated-inputs `(("r-insight" ,r-insight) - ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) - ("r-purrr" ,r-purrr) - ("r-sjlabelled" ,r-sjlabelled) - ("r-sjmisc" ,r-sjmisc))) + ("r-sjlabelled" ,r-sjlabelled))) (home-page "https://github.com/strengejacke/ggeffects") (synopsis "Create tidy data frames of marginal effects for ggplot") (description -- cgit v1.2.3 From a8a261b0f1c656474f46942d68c9bcd1f2a90d77 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:12:26 +0100 Subject: gnu: r-remotes: Update to 2.1.1. * gnu/packages/cran.scm (r-remotes): Update to 2.1.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e8b8e371e3..b8a221a00e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8776,14 +8776,14 @@ more information about packages, and where they were installed from.") (define-public r-remotes (package (name "r-remotes") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "remotes" version)) (sha256 (base32 - "19v8dmnk9l4i9m64p7zgmj7y1vhnnwhi5kyn0k5d034zzkvchi49")))) + "12qinl7jv54f2524ri13gcrv6d523rg1harpi500j676zi30fnaf")))) (build-system r-build-system) (home-page "https://github.com/r-lib/remotes#readme") (synopsis "R package installation from remote repositories") -- cgit v1.2.3 From 7bc252902dc299ec65a3017005e4c73a35a505a7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:12:39 +0100 Subject: gnu: r-summarytools: Update to 0.9.5. * gnu/packages/cran.scm (r-summarytools): Update to 0.9.5. [propagated-inputs]: Add r-base64enc; remove r-rcurl. --- gnu/packages/cran.scm | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b8a221a00e..5e88a6f006 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8900,17 +8900,18 @@ ways.") (define-public r-summarytools (package (name "r-summarytools") - (version "0.9.4") + (version "0.9.5") (source (origin (method url-fetch) (uri (cran-uri "summarytools" version)) (sha256 (base32 - "1n695baz56mg4f13xjjadfq0xalw5xsn6xicil0yap5hgi8fsr3a")))) + "0iv5237478y2ggbqln3cppm0crnqk3myrkf6ydkhwsd1z5q538pd")))) (build-system r-build-system) (propagated-inputs - `(("r-checkmate" ,r-checkmate) + `(("r-base64enc" ,r-base64enc) + ("r-checkmate" ,r-checkmate) ("r-dplyr" ,r-dplyr) ("r-htmltools" ,r-htmltools) ("r-lubridate" ,r-lubridate) @@ -8919,7 +8920,6 @@ ways.") ("r-pander" ,r-pander) ("r-pryr" ,r-pryr) ("r-rapportools" ,r-rapportools) - ("r-rcurl" ,r-rcurl) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr))) (home-page "https://github.com/dcomtois/summarytools") -- cgit v1.2.3 From 969c933fb961e13bb15eb9d8b236092126728b5f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:13:07 +0100 Subject: gnu: r-weights: Update to 1.0.1. * gnu/packages/cran.scm (r-weights): Update to 1.0.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5e88a6f006..1c3d957f72 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9164,14 +9164,14 @@ al. (2016)).") (define-public r-weights (package (name "r-weights") - (version "1.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "weights" version)) (sha256 (base32 - "0186bfpkhxngrshac6bpg37alp6slwhwd43inrm8hqg0vhpfgc4c")))) + "1ka2kvzg464vn80qziqy4mrciy9wwd3jfasgq0d33wbiblhmxkj5")))) (build-system r-build-system) (propagated-inputs `(("r-gdata" ,r-gdata) -- cgit v1.2.3 From 0227947fbf04bbeb684abe4b769a65512c5dc30d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:13:20 +0100 Subject: gnu: r-rgl: Update to 0.100.47. * gnu/packages/cran.scm (r-rgl): Update to 0.100.47. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1c3d957f72..5e4878b5f7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9310,14 +9310,14 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "0.100.30") + (version "0.100.47") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "0rzqzskcwf2ah4yr62x5rjwf7yh90d43h39gk7jmfc5lc08zaxc5")))) + "19jxf6hz3dsmya6wdgxc3qi5c1pcksizpp0grylpdidsry4ig4pl")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) -- cgit v1.2.3 From 0c13ce8c7276360a87dd8000456747b72715077d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:13:31 +0100 Subject: gnu: r-ks: Update to 1.11.7. * gnu/packages/cran.scm (r-ks): Update to 1.11.7. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5e4878b5f7..3cb6446e55 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9393,13 +9393,13 @@ isosurfaces.") (define-public r-ks (package (name "r-ks") - (version "1.11.6") + (version "1.11.7") (source (origin (method url-fetch) (uri (cran-uri "ks" version)) (sha256 - (base32 "0hcccjfqnzdxkmnfzq8c5a7yhc138azwyl7rp29d1vl1jawwrwfq")))) + (base32 "1f6jvxy0hmngyvnvrknzbmhl42njk0vqyycvydm4qnp8cqirqvba")))) (build-system r-build-system) (propagated-inputs `(("r-fnn" ,r-fnn) -- cgit v1.2.3 From 846ec722418f734e2a457aa23a3a2c50e73e3ec4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:13:39 +0100 Subject: gnu: r-waveslim: Update to 1.7.5.2. * gnu/packages/cran.scm (r-waveslim): Update to 1.7.5.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3cb6446e55..5e97220a92 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9753,14 +9753,14 @@ Processing.") (define-public r-waveslim (package (name "r-waveslim") - (version "1.7.5.1") + (version "1.7.5.2") (source (origin (method url-fetch) (uri (cran-uri "waveslim" version)) (sha256 (base32 - "0mky0nb4xxp8rybp87mxw2f1q6k400wpxv01zr4injv7ja6028xk")))) + "166ai4q3mlh3v338si952z7fbgph80h0l4ws6bna8ig5jx81rnmz")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) -- cgit v1.2.3 From fb413fff5c670fb54b487e222381d3fb4839a79e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:13:48 +0100 Subject: gnu: r-rnifti: Update to 1.1.0. * gnu/packages/cran.scm (r-rnifti): Update to 1.1.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5e97220a92..177f2e04f0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -10213,14 +10213,14 @@ Touzet and Varre (2007).") (define-public r-rnifti (package (name "r-rnifti") - (version "1.0.1") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "RNifti" version)) (sha256 (base32 - "0hfid40pgfi1ykqka8y3v0m7h0iyd6fbvycvqlad3ibmbg621f0w")))) + "1z8ninp3aq18w0slcfn8r2fp48cdz8l0k0namsrnvgyp8lzcpqpn")))) (properties `((upstream-name . "RNifti"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) -- cgit v1.2.3 From 30ef5e8205b0b8b2324f91b7e46acff62a9af9cb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:13:59 +0100 Subject: gnu: r-fields: Update to 10.3. * gnu/packages/cran.scm (r-fields): Update to 10.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 177f2e04f0..aff1f2859d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11176,13 +11176,13 @@ Differences with other sparse matrix packages are: (define-public r-fields (package (name "r-fields") - (version "10.0") + (version "10.3") (source (origin (method url-fetch) (uri (cran-uri "fields" version)) (sha256 - (base32 "173zm5vr236ydiq0v27qy0l3x7h9fc7jly38iakg77j26i0a01il")))) + (base32 "12k97vfjlz5h8vynirnvik1nyj1iw25n8xl7awmx9mpd6wvgy2s9")))) (build-system r-build-system) (propagated-inputs `(("r-maps" ,r-maps) -- cgit v1.2.3 From 4e977a9bf26e3dfeaf50a6467ecb4ccb31f0e0f6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:14:08 +0100 Subject: gnu: r-genenet: Update to 1.2.14. * gnu/packages/cran.scm (r-genenet): Update to 1.2.14. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index aff1f2859d..8cc2bb1903 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11342,14 +11342,14 @@ dynamical correlation and dynamical covariance.") (define-public r-genenet (package (name "r-genenet") - (version "1.2.13") + (version "1.2.14") (source (origin (method url-fetch) (uri (cran-uri "GeneNet" version)) (sha256 (base32 - "0w52apk0nnr8nsskf26ff7ana8xiksr8wqmkjxzwhzgg7fncm61p")))) + "0cdhrj15rz0w0pyw3r8mikrzsdh95y5i1c0pa3cn0c2bjnjx3x3n")))) (properties `((upstream-name . "GeneNet"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From dbfbef87294ffd1bd784dfa0d2b9790c82d46422 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:14:16 +0100 Subject: gnu: r-protviz: Update to 0.6.0. * gnu/packages/cran.scm (r-protviz): Update to 0.6.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8cc2bb1903..e5d70b846e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11391,14 +11391,14 @@ library.") (define-public r-protviz (package (name "r-protviz") - (version "0.5.1") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "protViz" version)) (sha256 (base32 - "0cznzm1ijlq33yd5wsa61prav77y2vi698w0n2fx1xcv504c4bjv")))) + "165bh2m6rrcmr0pc2drj6hdg6xfx8k02lznxzj1fmsswsrlfhn3v")))) (properties `((upstream-name . "protViz"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) -- cgit v1.2.3 From 8f5468e7e70498e275770fdb06445ebb5426d661 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:14:24 +0100 Subject: gnu: r-etm: Update to 1.0.5.1. * gnu/packages/cran.scm (r-etm): Update to 1.0.5.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e5d70b846e..83c0164cc3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11441,14 +11441,14 @@ JASA, 94:496-509.") (define-public r-etm (package (name "r-etm") - (version "1.0.5") + (version "1.0.5.1") (source (origin (method url-fetch) (uri (cran-uri "etm" version)) (sha256 (base32 - "1yivbq8y0ijcl1m4nir4q9hp4pi6iphwxgjprygsdf7vp98wq677")))) + "0m41pm277sd50pharigcqzr1a2g92wnmdf6fcab6fx16ia2fzrm7")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) -- cgit v1.2.3 From ecf7477b6e34488224beee6837d30d5d1cab456b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:14:36 +0100 Subject: gnu: r-mcmc: Update to 0.9-6.1. * gnu/packages/cran.scm (r-mcmc): Update to 0.9-6.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 83c0164cc3..e396e14747 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11578,14 +11578,14 @@ lasso, adaptive lasso and Ridge regression based on cross-validation.") (define-public r-mcmc (package (name "r-mcmc") - (version "0.9-6") + (version "0.9-6.1") (source (origin (method url-fetch) (uri (cran-uri "mcmc" version)) (sha256 (base32 - "1fc6a6asn53lx7x7pnlb5mb716nv4pcmbp99f1i30y4hzygihfj4")))) + "1i1nhdapyijvm58zx38q28zk01ndmi6smjivxk5xs2cx9b6v2av9")))) (build-system r-build-system) (home-page "http://www.stat.umn.edu/geyer/mcmc/") (synopsis "Markov chain Monte Carlo") -- cgit v1.2.3 From 8150ebedb8b87bcc48649fa582474db65fed2268 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:14:45 +0100 Subject: gnu: r-rsvd: Update to 1.0.3. * gnu/packages/cran.scm (r-rsvd): Update to 1.0.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e396e14747..64ce107e84 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11709,14 +11709,14 @@ machine or distributed on a compute cluster.") (define-public r-rsvd (package (name "r-rsvd") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "rsvd" version)) (sha256 (base32 - "0fia77y5fxnhwkcxlgp98ygb8fdfraky75x80hkf7kvvpwc5rzn8")))) + "1fvrw46fl5xb2akaa4mp8nja4h7nn4bdhnjdrk22fsdfqc7hwmhk")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) -- cgit v1.2.3 From 2d5c38f5001ecb5e6d336c118a3719a9cd749d4c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:14:52 +0100 Subject: gnu: r-blockmodeling: Update to 0.3.6. * gnu/packages/cran.scm (r-blockmodeling): Update to 0.3.6. [propagated-inputs]: Remove r-doparallel, r-dorng, and r-foreach. --- gnu/packages/cran.scm | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 64ce107e84..1519dd51a9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11816,20 +11816,17 @@ chosen parallel environment and associated foreach backend.") (define-public r-blockmodeling (package (name "r-blockmodeling") - (version "0.3.4") + (version "0.3.6") (source (origin (method url-fetch) (uri (cran-uri "blockmodeling" version)) (sha256 (base32 - "11v9903y9dwlzaqp8sx0fsibcg82phvappddy37r8lnxd4vchsd2")))) + "12paf76l3wlxad14bkxn37lw9rg6ka473m86wlcf3yhriw8kbaiz")))) (build-system r-build-system) (propagated-inputs - `(("r-doparallel" ,r-doparallel) - ("r-dorng" ,r-dorng) - ("r-foreach" ,r-foreach) - ("r-matrix" ,r-matrix))) + `(("r-matrix" ,r-matrix))) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/blockmodeling") (synopsis "Generalized and classical blockmodeling of valued networks") -- cgit v1.2.3 From 50c0f22fad6b809d8b4eacbc7fbf1f6b6cf808b1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:15:20 +0100 Subject: gnu: r-gamlss-dist: Update to 5.1-6. * gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1519dd51a9..4371e0bce4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12065,13 +12065,13 @@ such software by imputing dropout events.") (define-public r-gamlss-dist (package (name "r-gamlss-dist") - (version "5.1-5") + (version "5.1-6") (source (origin (method url-fetch) (uri (cran-uri "gamlss.dist" version)) (sha256 - (base32 "1rl7hzdg5xpvaq3yyzwxhsaqzzs0qidi3ibv454fisijgv8l4vqw")))) + (base32 "1p904x0b07z4amaqdn2xhs7qzbq8lisr6lqc844s3pkxzmny7w1z")))) (properties `((upstream-name . "gamlss.dist"))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass))) -- cgit v1.2.3 From 5e1c84e5f0ad07a482a3ee480c6ed44219ed1945 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:15:30 +0100 Subject: gnu: r-repr: Update to 1.1.0. * gnu/packages/cran.scm (r-repr): Update to 1.1.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4371e0bce4..21ba3c628c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12492,14 +12492,14 @@ compatible with @code{rzmq} are also provided.") (define-public r-repr (package (name "r-repr") - (version "1.0.2") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "repr" version)) (sha256 (base32 - "0wn9fdddqjgn0bdfl75x89rcxahbgqs324bhg0pfq6va5q2mlbbw")))) + "15jz780w4nd9qjd1g3gq8f5lkh60p2v3ig3hm5kl1rg3z4cf0gvl")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) -- cgit v1.2.3 From 3f1c75ee3a0f5c13aff06e221dfdf2b827302e85 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:15:37 +0100 Subject: gnu: r-picante: Update to 1.8.1. * gnu/packages/cran.scm (r-picante): Update to 1.8.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 21ba3c628c..a0ad8c86d8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12687,14 +12687,14 @@ return the match results in tidy data frames.") (define-public r-picante (package (name "r-picante") - (version "1.8") + (version "1.8.1") (source (origin (method url-fetch) (uri (cran-uri "picante" version)) (sha256 (base32 - "1bcq2j7fs89c2jib68qq6la67rxyg9raryf162mwvjakpf6k19l1")))) + "1b16zm8zjjsl181b8krkdcrbcw347kf772c4w7y5332qmfi7jhz0")))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) -- cgit v1.2.3 From 7227fd438836e8721a05eec820aabc5dc2c900f0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:15:46 +0100 Subject: gnu: r-spdata: Update to 0.3.3. * gnu/packages/cran.scm (r-spdata): Update to 0.3.3. [propagated-inputs]: Add r-raster and r-sp. --- gnu/packages/cran.scm | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a0ad8c86d8..89659c1280 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13061,16 +13061,19 @@ univariate class intervals for mapping or other graphics purposes.") (define-public r-spdata (package (name "r-spdata") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "spData" version)) (sha256 (base32 - "190msrrpn226x27pcnck4ac34f9k4xcn26cyz2apdri2nzkr6zbw")))) + "1v66qkvsx77hvv5c78v760yp0hknf7xzcjir2ri3ha456mz79yl5")))) (properties `((upstream-name . "spData"))) (build-system r-build-system) + (propagated-inputs + `(("r-raster" ,r-raster) + ("r-sp" ,r-sp))) (home-page "https://github.com/Nowosad/spData") (synopsis "Datasets for spatial analysis") (description -- cgit v1.2.3 From ffe45e0aa07504070d82940bd9f9a30f6ae94e76 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:16:03 +0100 Subject: gnu: r-deldir: Update to 0.1-25. * gnu/packages/cran.scm (r-deldir): Update to 0.1-25. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 89659c1280..e5eebc8802 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13114,14 +13114,14 @@ sampling.") (define-public r-deldir (package (name "r-deldir") - (version "0.1-23") + (version "0.1-25") (source (origin (method url-fetch) (uri (cran-uri "deldir" version)) (sha256 (base32 - "0790dwxb2mz1ffz8gd5vwdr0if2q76dzy3vab5rsykf9kz72n4g0")))) + "0kdglv8rc1pb4ilcid4xc9wpv5kkj2y6x6wg7919k3hya7mz58ph")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/deldir") -- cgit v1.2.3 From 886cd33460733614719e971cd6a03f32fa8338f8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:16:11 +0100 Subject: gnu: r-sf: Update to 0.8-1. * gnu/packages/cran.scm (r-sf): Update to 0.8-1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e5eebc8802..5a93a74505 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13138,14 +13138,14 @@ tessellation.") (define-public r-sf (package (name "r-sf") - (version "0.8-0") + (version "0.8-1") (source (origin (method url-fetch) (uri (cran-uri "sf" version)) (sha256 (base32 - "05dyq0vcz2f1fl03hk3v1a4nz4s84yyqw4rc9w9cwfq71gvm9qwf")))) + "17wyv74m1ppc3s5jdv60r74jj23nidxpzl46vjhfclfhnpvm7sx9")))) (build-system r-build-system) (inputs `(("gdal" ,gdal) -- cgit v1.2.3 From 2d1788f48d8b00da68e4bd9cba160b0c0c4f91a1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:16:20 +0100 Subject: gnu: r-rmetasim: Update to 3.1.14. * gnu/packages/cran.scm (r-rmetasim): Update to 3.1.14. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5a93a74505..71ffe9f7d9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13271,14 +13271,14 @@ minimum spanning tree and network, and median-joining networks.") (define-public r-rmetasim (package (name "r-rmetasim") - (version "3.1.7") + (version "3.1.14") (source (origin (method url-fetch) (uri (cran-uri "rmetasim" version)) (sha256 (base32 - "0sz4mdprdi6sgkfwfdvh2hr9nxiwq17sw0vggq3cvs7lzb0i6m9r")))) + "0rdkhfgyr97r2d1kd9g8ipb2pn563qxm1y4m9z678q0kqan2ddl0")))) (build-system r-build-system) (propagated-inputs `(("r-ade4" ,r-ade4) -- cgit v1.2.3 From 6e94ba488c0c5e30ccb07b6a974fa0f6aa6079b3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:16:27 +0100 Subject: gnu: r-ggraph: Update to 2.0.1. * gnu/packages/cran.scm (r-ggraph): Update to 2.0.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 71ffe9f7d9..096b2667af 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14274,14 +14274,14 @@ databases, including ENA, PDB or ChEMBL are also accessible.") (define-public r-ggraph (package (name "r-ggraph") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "ggraph" version)) (sha256 (base32 - "0qj7w3af0pgmd9mil6y571jikfkln7b8csvzg6b08spwbglfy1s3")))) + "0q2yqsb981a2arf9j530kqs61vw38ixyxbhb6yvv7skgbck02r6y")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) -- cgit v1.2.3 From ff92cd1de416ebaee7ae0c14a223faa885159150 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:16:38 +0100 Subject: gnu: r-lintr: Update to 2.0.1. * gnu/packages/cran.scm (r-lintr): Update to 2.0.1. [propagated-inputs]: Remove r-stringdist. --- gnu/packages/cran.scm | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 096b2667af..cd3e8b1385 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14872,14 +14872,14 @@ provides tools to compute this metric.") (define-public r-lintr (package (name "r-lintr") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "lintr" version)) (sha256 (base32 - "09gbci4v5n4gsfzminly8332fw7faxdi1kkyvpa10dydx02sjcwb")))) + "14yfh641afg6griaadbdciyr3k94fl55s055qwzghgk5gdsj61zy")))) (properties `((upstream-name . "lintr"))) (build-system r-build-system) (propagated-inputs @@ -14892,7 +14892,6 @@ provides tools to compute this metric.") ("r-knitr" ,r-knitr) ("r-rex" ,r-rex) ("r-rstudioapi" ,r-rstudioapi) - ("r-stringdist" ,r-stringdist) ("r-testthat" ,r-testthat) ("r-xml2" ,r-xml2) ("r-xmlparsedata" ,r-xmlparsedata))) -- cgit v1.2.3 From 0f303adfe5dff86427013ffba0769145071a045e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:17:02 +0100 Subject: gnu: r-styler: Update to 1.3.1. * gnu/packages/cran.scm (r-styler): Update to 1.3.1. [propagated-inputs]: Add r-r-cache. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cd3e8b1385..c481813b4b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14936,20 +14936,21 @@ batch correction, and data correction.") (define-public r-styler (package (name "r-styler") - (version "1.2.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "styler" version)) (sha256 (base32 - "0rdbz60x8bymis6r6188ia1y0ip3nhf5y363i4cmakr618irjab9")))) + "14vfw1w22b9kbbgz72dcg814ycjvrd91ziva42jmmzqbspfxjvmw")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) ("r-cli" ,r-cli) ("r-magrittr" ,r-magrittr) ("r-purrr" ,r-purrr) + ("r-r-cache" ,r-r-cache) ("r-rematch2" ,r-rematch2) ("r-rlang" ,r-rlang) ("r-rprojroot" ,r-rprojroot) -- cgit v1.2.3 From 16703ceaea2d6bddda2a598744e3f9394f4dbfde Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:17:18 +0100 Subject: gnu: r-leiden: Update to 0.3.3. * gnu/packages/cran.scm (r-leiden): Update to 0.3.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c481813b4b..2ea9dfd151 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15522,14 +15522,14 @@ computed using the L1 (Manhattan, taxicab) metric.") (define-public r-leiden (package (name "r-leiden") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "leiden" version)) (sha256 (base32 - "0kf6fxqf5l5vilm9g7vspc18daw84cwhpafs5szb1skwd6vrfdzw")))) + "1hh6bmbz6cpqwl4i94gxylgv9x92zbqdg81r8r4ymfy8c70f3df2")))) (properties `((upstream-name . "leiden"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 469c484afc18c157941969d8168740fe837c8fb8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:17:27 +0100 Subject: gnu: r-assertr: Update to 2.7. * gnu/packages/cran.scm (r-assertr): Update to 2.7. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2ea9dfd151..d5e1f42fd8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15842,14 +15842,14 @@ cell RNA-seq experiments.") (define-public r-assertr (package (name "r-assertr") - (version "2.6") + (version "2.7") (source (origin (method url-fetch) (uri (cran-uri "assertr" version)) (sha256 (base32 - "0g4ii6vhp0155a29ljhs64a09x0nzy5ybvwwchhk4mkcgsvnvfkj")))) + "1x868pd4dac1c7b1q5390wqh2f6s50km8nqcpim3nxcj2l4qkqdb")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) -- cgit v1.2.3 From 5130dd52eb314fe0e2a2b7eef15d1664b5ebec54 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:17:35 +0100 Subject: gnu: r-parameters: Update to 0.5.0. * gnu/packages/cran.scm (r-parameters): Update to 0.5.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d5e1f42fd8..2c39d980f5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15869,14 +15869,14 @@ in pipelines.") (define-public r-parameters (package (name "r-parameters") - (version "0.4.1") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "0xkdn1079sr6kgyhc1zmn9imca4bghnxs3f91h0z7vkzjj73qdbi")))) + "19cblrq079svp5j3wgikw5fsdbsp1w0f2llm7kcf1rg5w1aagjr7")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 6abb66d1be7a62e991d05e0454375952e9aeef0c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:17:43 +0100 Subject: gnu: r-bios2cor: Update to 2.1. * gnu/packages/cran.scm (r-bios2cor): Update to 2.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2c39d980f5..03e525329f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16147,14 +16147,14 @@ structural data.") (define-public r-bios2cor (package (name "r-bios2cor") - (version "2.0") + (version "2.1") (source (origin (method url-fetch) (uri (cran-uri "Bios2cor" version)) (sha256 (base32 - "1rrz0vs6wbkwys3l5jv1rdnlhyb4r1q9pv7jlnmsx6c1b4f4vz5n")))) + "04wk1cjrrxhpv1kdhd67r1qvjv268xxi0z0r105wy912110z9m6x")))) (properties `((upstream-name . "Bios2cor"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 8343dcf1aa8b262c53dd35127ddc694a71d1b6c2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:17:52 +0100 Subject: gnu: r-abcrlda: Update to 1.0.2. * gnu/packages/cran.scm (r-abcrlda): Update to 1.0.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 03e525329f..0f4521958d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16401,14 +16401,14 @@ simulation.") (define-public r-abcrlda (package (name "r-abcrlda") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "abcrlda" version)) (sha256 (base32 - "0j29ifsvmxfx2g6v4bpbb4s6miwfpf4vlkpbgj6f2q078s4clc85")))) + "0zjdrbg3zx0znqnh0dvmifs9c12b8vjhbaf3nbwab9xh25nsmg75")))) (properties `((upstream-name . "abcrlda"))) (build-system r-build-system) (home-page "https://ieeexplore.ieee.org/document/8720003/") -- cgit v1.2.3 From e7705bc267779a40d8f9763bba59258692794845 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:18:00 +0100 Subject: gnu: r-showtext: Update to 0.7-1. * gnu/packages/cran.scm (r-showtext): Update to 0.7-1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0f4521958d..d370a59052 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16559,14 +16559,14 @@ package.") (define-public r-showtext (package (name "r-showtext") - (version "0.7") + (version "0.7-1") (source (origin (method url-fetch) (uri (cran-uri "showtext" version)) (sha256 (base32 - "1ihgqzfia36b0n9aa41p1w98wxxvs1lxh1zz0570hbfqmph1sk73")))) + "0a5gg72bfrc7wm0phj1aflj1wc08kfi81ac32na6ya9s2ivyimw5")))) (properties `((upstream-name . "showtext"))) (build-system r-build-system) (inputs -- cgit v1.2.3 From 1a3a1d66d61a0606c23fd9b31048210262aa51f8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:18:07 +0100 Subject: gnu: r-randtoolbox: Update to 1.30.1. * gnu/packages/cran.scm (r-randtoolbox): Update to 1.30.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d370a59052..a2cc441120 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16980,14 +16980,14 @@ on Linear Recurrences Modulo 2'', ACM Transactions on Mathematical Software.") (define-public r-randtoolbox (package (name "r-randtoolbox") - (version "1.30.0") + (version "1.30.1") (source (origin (method url-fetch) (uri (cran-uri "randtoolbox" version)) (sha256 (base32 - "141p13ajgzmb2s89rlac7zrra92mi1izvpfrngb4kqzlf3igdsqd")))) + "0qg20ar6qns858jdzqhmfq7yji81czhr6cim257958gqpj66sn95")))) (properties `((upstream-name . "randtoolbox"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From fd483cb370ebb99ffe8bcf37b60756ad5baadd36 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:18:14 +0100 Subject: gnu: r-gamlss: Update to 5.1-6. * gnu/packages/cran.scm (r-gamlss): Update to 5.1-6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a2cc441120..21c280dbb3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17145,14 +17145,14 @@ models.") (define-public r-gamlss (package (name "r-gamlss") - (version "5.1-5") + (version "5.1-6") (source (origin (method url-fetch) (uri (cran-uri "gamlss" version)) (sha256 (base32 - "0gcngfck0dk2rhjg0z1fnc61dqs0s049jy2rkywaf57531s2k8bc")))) + "16b7ick1khvldbvfmmpw9cjs1vznnrisvifq7717fxzd8c9s5jdr")))) (properties `((upstream-name . "gamlss"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 46d833ef98958ab5df2386d483b1d6a4b5ae5fca Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:18:22 +0100 Subject: gnu: r-actfrag: Update to 0.1.1. * gnu/packages/cran.scm (r-actfrag): Update to 0.1.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 21c280dbb3..dde483806b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17962,14 +17962,14 @@ poverty measures. It provides both empirical and theoretical Lorenz curves.") (define-public r-actfrag (package (name "r-actfrag") - (version "0.1.0") + (version "0.1.1") (source (origin (method url-fetch) (uri (cran-uri "ActFrag" version)) (sha256 (base32 - "06l5a679j6289008ls57v420mnzpq9a4ln7svi5bh0vpvws7sr9d")))) + "08r3gwjz4fkyy85dxqix0ffm5xyq45032qv3snnzxnlqxslxbqn1")))) (properties `((upstream-name . "ActFrag"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 90d499782ebdc678de3ab26a860df268218832d2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:18:30 +0100 Subject: gnu: r-actigraphy: Update to 1.4.0. * gnu/packages/cran.scm (r-actigraphy): Update to 1.4.0. [propagated-inputs]: Remove r-sdmtools. --- gnu/packages/cran.scm | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index dde483806b..622bfd2290 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -18013,19 +18013,18 @@ examples.") (define-public r-actigraphy (package (name "r-actigraphy") - (version "1.3.2") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "Actigraphy" version)) (sha256 (base32 - "0y0ccmxhdfhdmi4k6pbfvnqknkqbgvfsf2qf7z7rc4xpfgym6574")))) + "0bpmvszzv5fm72nar3wgnmfl5am7znqfajmlbv38ihkbi7jbwk20")))) (properties `((upstream-name . "Actigraphy"))) (build-system r-build-system) (propagated-inputs - `(("r-fda" ,r-fda) - ("r-sdmtools" ,r-sdmtools))) + `(("r-fda" ,r-fda))) (home-page "https://cran.r-project.org/web/packages/Actigraphy/") (synopsis "Actigraphy data analysis") (description -- cgit v1.2.3 From a3d80e6212861ac9468e9163e8f05ccc3035a4a4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:19:04 +0100 Subject: gnu: r-imager: Update to 0.42.1. * gnu/packages/cran.scm (r-imager): Update to 0.42.1. [propagated-inputs]: Remove r-cairo and r-plyr. --- gnu/packages/cran.scm | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 622bfd2290..29106bb3f6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -18304,14 +18304,14 @@ number embedded in the file rather than the file extension.") (define-public r-imager (package (name "r-imager") - (version "0.41.2") + (version "0.42.1") (source (origin (method url-fetch) (uri (cran-uri "imager" version)) (sha256 (base32 - "19fqgjhg04garbipx20g72h9dd6k0jj4ac48nby6km4h665vrs4v")))) + "1d7a49lcna77wyfjf5q1b89jck3p3vnysnkgz4drb0qkpy6hz76b")))) (properties `((upstream-name . "imager"))) (build-system r-build-system) (inputs @@ -18320,12 +18320,10 @@ number embedded in the file rather than the file extension.") ("libx11" ,libx11) ("zlib" ,zlib))) (propagated-inputs - `(("r-cairo" ,r-cairo) - ("r-downloader" ,r-downloader) + `(("r-downloader" ,r-downloader) ("r-igraph" ,r-igraph) ("r-jpeg" ,r-jpeg) ("r-magrittr" ,r-magrittr) - ("r-plyr" ,r-plyr) ("r-png" ,r-png) ("r-purrr" ,r-purrr) ("r-rcpp" ,r-rcpp) -- cgit v1.2.3 From 1a060eabf8d30d1d1f5f9c551a7d3840e07651d1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:19:39 +0100 Subject: gnu: r-tolerance: Update to 2.0.0. * gnu/packages/cran.scm (r-tolerance): Update to 2.0.0. [propagated-inputs]: Add r-mass. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 29106bb3f6..5c6a4e7a88 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -18475,18 +18475,19 @@ used in outliers detection.") (define-public r-tolerance (package (name "r-tolerance") - (version "1.3.0") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "tolerance" version)) (sha256 (base32 - "17qh4ad1f3fbcpwlxxqh8qr9bnwjcl4yxk0l3fkbr6b2l4rc5p86")))) + "001snzr2ipag3zprynydlbi9prkjzrllc054qh7m0qwkb3r19jjd")))) (properties `((upstream-name . "tolerance"))) (build-system r-build-system) (propagated-inputs - `(("r-rgl" ,r-rgl))) + `(("r-mass" ,r-mass) + ("r-rgl" ,r-rgl))) (home-page "https://cran.r-project.org/web/packages/tolerance/") (synopsis "Statistical tolerance intervals and regions") (description -- cgit v1.2.3 From e40d6c4c7a74fca3572991c55706a787b19d4d90 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Feb 2020 21:19:55 +0100 Subject: gnu: r-biclust: Update to 2.0.2. * gnu/packages/cran.scm (r-biclust): Update to 2.0.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5c6a4e7a88..b731ddc29e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -18556,14 +18556,14 @@ cluster stability.") (define-public r-biclust (package (name "r-biclust") - (version "2.0.1") + (version "2.0.2") (source (origin (method url-fetch) (uri (cran-uri "biclust" version)) (sha256 (base32 - "1y5n6wfa1lx88ck3x09rcg0dh3pw89225h85hmq2la1s1fpa48i0")))) + "1pk7mvwlg4hkc4cn4w6wr2c192qx03d1xfwlzclk5bw1nmcg483b")))) (properties `((upstream-name . "biclust"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 3ec74f9de94585f83ee8203e3022d036fe7bc0be Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:01:03 +0100 Subject: gnu: Add r-fracdiff. * gnu/packages/cran.scm (r-fracdiff): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b731ddc29e..71a7cc250e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19257,3 +19257,25 @@ are followed and which ones are not) from one package and use it to check another. This makes it easier to find and correct the most important problems first.") (license license:gpl3))) + +(define-public r-fracdiff + (package + (name "r-fracdiff") + (version "1.5-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "fracdiff" version)) + (sha256 + (base32 + "1dhfjlhr9sb38qgpsx0sm73l9lgc13d0fk32l7fmjfnalhr3n45q")))) + (properties `((upstream-name . "fracdiff"))) + (build-system r-build-system) + (home-page "https://github.com/mmaechler/fracdiff") + (synopsis + "Fractionally differenced ARIMA aka ARFIMA(P,d,q) models") + (description + "This package provides tools for the maximum likelihood estimation of the +parameters of a fractionally differenced ARIMA(p,d,q) model (Haslett and +Raftery, Appl.Statistics, 1989); it includes inference and basic methods.") + (license license:gpl2+))) -- cgit v1.2.3 From dfecd5598e3d997a5729b228154f349c171dd03a Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:04:16 +0100 Subject: gnu: Add r-forecast. * gnu/packages/cran.scm (r-forecast): New variable. --- gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 71a7cc250e..9fb160ba34 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19279,3 +19279,39 @@ first.") parameters of a fractionally differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989); it includes inference and basic methods.") (license license:gpl2+))) + +(define-public r-forecast + (package + (name "r-forecast") + (version "8.10") + (source + (origin + (method url-fetch) + (uri (cran-uri "forecast" version)) + (sha256 + (base32 + "0jccr2wg7sii38lyqrs58fkxf2az7nw6v0jya27hpbz9bg8ib3kr")))) + (properties `((upstream-name . "forecast"))) + (build-system r-build-system) + (propagated-inputs + `(("r-colorspace" ,r-colorspace) + ("r-fracdiff" ,r-fracdiff) + ("r-ggplot2" ,r-ggplot2) + ("r-lmtest" ,r-lmtest) + ("r-magrittr" ,r-magrittr) + ("r-nnet" ,r-nnet) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-timedate" ,r-timedate) + ("r-tseries" ,r-tseries) + ("r-urca" ,r-urca) + ("r-zoo" ,r-zoo))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; needed for vignettes + (home-page "https://pkg.robjhyndman.com/forecast/") + (synopsis "Forecasting functions for time series and linear models") + (description + "This package provides methods and tools for displaying and analysing +univariate time series forecasts including exponential smoothing via state +space models and automatic ARIMA modelling.") + (license license:gpl3))) -- cgit v1.2.3 From 532b318020748c035b43f83611899e4ba0875ae1 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:06:29 +0100 Subject: gnu: Add r-xmisc. * gnu/packages/cran.scm (r-xmisc): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9fb160ba34..310b80a520 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19315,3 +19315,25 @@ Raftery, Appl.Statistics, 1989); it includes inference and basic methods.") univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling.") (license license:gpl3))) + +(define-public r-xmisc + (package + (name "r-xmisc") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "Xmisc" version)) + (sha256 + (base32 + "11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1")))) + (properties `((upstream-name . "Xmisc"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=Xmisc") + (synopsis + "Xiaobei's miscellaneous classes and functions") + (description + "This package provides Xiaobei's miscellaneous classes and functions, +which are useful when developing R packages for @dfn{object oriented +programming} (OOP) using R Reference Class.") + (license license:gpl2+))) -- cgit v1.2.3 From 38339c4cab9f40db7c70c15b56827f1954b4f53b Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:55:46 +0100 Subject: gnu: Add r-proxyc. * gnu/packages/cran.scm (r-proxyc): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 310b80a520..243f692e04 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19337,3 +19337,31 @@ space models and automatic ARIMA modelling.") which are useful when developing R packages for @dfn{object oriented programming} (OOP) using R Reference Class.") (license license:gpl2+))) + +(define-public r-proxyc + (package + (name "r-proxyc") + (version "0.1.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "proxyC" version)) + (sha256 + (base32 + "159bc42x4shm6n3rh9fc8ziv3ivq0ipmpbasrh279hhn1prc8gg6")))) + (properties `((upstream-name . "proxyC"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppparallel" ,r-rcppparallel))) + (home-page "https://cran.r-project.org/package=proxyC") + (synopsis "Compute proximity in large sparse matrices") + (description + "This package provides efficient tools to compute the proximity between +rows or columns of large matrices. Functions are optimised for large sparse +matrices using the Armadillo and Intel TBB libraries. Among several built-in +similarity/distance measures, computation of correlation, cosine similarity +and Euclidean distance is particularly fast.") + (license license:gpl3))) -- cgit v1.2.3 From 4f53ac4b9b5f92240fcdf9b3696de580a7647c7e Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:57:10 +0100 Subject: gnu: Add r-isocodes. * gnu/packages/cran.scm (r-isocodes): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 243f692e04..638be689cb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19365,3 +19365,25 @@ matrices using the Armadillo and Intel TBB libraries. Among several built-in similarity/distance measures, computation of correlation, cosine similarity and Euclidean distance is particularly fast.") (license license:gpl3))) + +(define-public r-isocodes + (package + (name "r-isocodes") + (version "2019.12.22") + (source + (origin + (method url-fetch) + (uri (cran-uri "ISOcodes" version)) + (sha256 + (base32 + "1k2f2258bwzs0b3nxma9kcw395qkljvk514a7047rx4dn0iwd874")))) + (properties `((upstream-name . "ISOcodes"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=ISOcodes") + (synopsis "Selected ISO codes") + (description + "This package provides ISO language, territory, currency, script and +character codes. It provides ISO 639 language codes, ISO 3166 territory +codes, ISO 4217 currency codes, ISO 15924 script codes, and the ISO 8859 +character codes as well as the UN M.49 area codes.") + (license license:gpl2))) -- cgit v1.2.3 From 6daed861a6bfef12765a4588a3cd5e83841aaa44 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:57:46 +0100 Subject: gnu: Add r-stopwords. * gnu/packages/cran.scm (r-stopwords): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 638be689cb..bfd71600d4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19387,3 +19387,24 @@ character codes. It provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO 15924 script codes, and the ISO 8859 character codes as well as the UN M.49 area codes.") (license license:gpl2))) + +(define-public r-stopwords + (package + (name "r-stopwords") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "stopwords" version)) + (sha256 + (base32 + "1nmi0bpd0c238g5b8ch1v034m5ng9llhs519cgxdrj3sh9fplwlv")))) + (properties `((upstream-name . "stopwords"))) + (build-system r-build-system) + (propagated-inputs `(("r-isocodes" ,r-isocodes))) + (home-page "https://github.com/quanteda/stopwords") + (synopsis "Multilingual stopword lists") + (description + "This package provides multiple sources of stopwords, for use in text +analysis and natural language processing.") + (license license:expat))) -- cgit v1.2.3 From 982a9fb6c64255205fb7e8c358f47f30f43710cf Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:58:57 +0100 Subject: gnu: Add r-spacyr. * gnu/packages/cran.scm (r-spacyr): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bfd71600d4..6bcc38c791 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19408,3 +19408,26 @@ character codes as well as the UN M.49 area codes.") "This package provides multiple sources of stopwords, for use in text analysis and natural language processing.") (license license:expat))) + +(define-public r-spacyr + (package + (name "r-spacyr") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "spacyr" version)) + (sha256 + (base32 + "1xsiz6zx89vs6ykrkkp011d8fz4ksdgnf5nyaq5ynjr6zv865vks")))) + (properties `((upstream-name . "spacyr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-reticulate" ,r-reticulate))) + (home-page "https://spacyr.quanteda.io") + (synopsis "R wrapper for the spaCy NLP library") + (description + "This package provides an R wrapper to the Python @dfn{natural language +processing} (NLP) library @code{spaCy}, from @url{http://spacy.io}.") + (license license:gpl3))) -- cgit v1.2.3 From e525c866d38b6c7498375f38eea7c92b0f7b6a4f Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:59:39 +0100 Subject: gnu: Add r-snowballc. * gnu/packages/cran.scm (r-snowballc): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6bcc38c791..109616049c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19431,3 +19431,26 @@ analysis and natural language processing.") "This package provides an R wrapper to the Python @dfn{natural language processing} (NLP) library @code{spaCy}, from @url{http://spacy.io}.") (license license:gpl3))) + +(define-public r-snowballc + (package + (name "r-snowballc") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "SnowballC" version)) + (sha256 + (base32 + "0b7pqdavf5jbf8si4ybnii5fff39p3b1rb5rym05j8s48hs7sqb1")))) + (properties `((upstream-name . "SnowballC"))) + (build-system r-build-system) + (home-page "https://r-forge.r-project.org/projects/r-temis/") + (synopsis "Snowball stemmers based on the C libstemmer UTF-8 library") + (description + "This package provides an R interface to the C @code{libstemmer} library +that implements Porter's word stemming algorithm for collapsing words to a +common root to aid comparison of vocabulary. Currently supported languages +are Danish, Dutch, English, Finnish, French, German, Hungarian, Italian, +Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") + (license license:bsd-3))) -- cgit v1.2.3 From 09df4c2aa2b65fda3568215418a02e19e9d23eb6 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 17:00:45 +0100 Subject: gnu: Add r-quanteda. * gnu/packages/cran.scm (r-quanteda): New variable. --- gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 109616049c..2e929fc115 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19454,3 +19454,50 @@ common root to aid comparison of vocabulary. Currently supported languages are Danish, Dutch, English, Finnish, French, German, Hungarian, Italian, Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (license license:bsd-3))) + +(define-public r-quanteda + (package + (name "r-quanteda") + (version "1.5.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "quanteda" version)) + (sha256 + (base32 + "0iv25rpx5cl9ansazjs0qb97pniajrxf4mqsnb5q98y2hil9ipd3")))) + (properties `((upstream-name . "quanteda"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-extrafont" ,r-extrafont) + ("r-fastmatch" ,r-fastmatch) + ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) + ("r-lubridate" ,r-lubridate) + ("r-magrittr" ,r-magrittr) + ("r-matrix" ,r-matrix) + ("r-network" ,r-network) + ("r-proxyc" ,r-proxyc) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppparallel" ,r-rcppparallel) + ("r-rspectra" ,r-rspectra) + ("r-sna" ,r-sna) + ("r-snowballc" ,r-snowballc) + ("r-spacyr" ,r-spacyr) + ("r-stopwords" ,r-stopwords) + ("r-stringi" ,r-stringi) + ("r-xml2" ,r-xml2) + ("r-yaml" ,r-yaml))) + (home-page "https://quanteda.io") + (synopsis "Quantitative analysis of textual data") + (description + "This package provides a fast, flexible, and comprehensive framework for +quantitative text analysis in R. It provides functionality for corpus +management, creating and manipulating tokens and ngrams, exploring keywords in +context, forming and manipulating sparse matrices of documents by features and +feature co-occurrences, analyzing keywords, computing feature similarities and +distances, applying content dictionaries, applying supervised and unsupervised +machine learning, visually representing text and text analyses, and more.") + (license license:gpl3))) -- cgit v1.2.3 From d94d34c4a5ca0b832e2cf140c547253d693fb140 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 17:55:05 +0100 Subject: gnu: Add r-topicmodels. * gnu/packages/cran.scm (r-topicmodels): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2e929fc115..9a343ba507 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19501,3 +19501,32 @@ feature co-occurrences, analyzing keywords, computing feature similarities and distances, applying content dictionaries, applying supervised and unsupervised machine learning, visually representing text and text analyses, and more.") (license license:gpl3))) + +(define-public r-topicmodels + (package + (name "r-topicmodels") + (version "0.2-9") + (source + (origin + (method url-fetch) + (uri (cran-uri "topicmodels" version)) + (sha256 + (base32 + "1757r5x8bsl4dk106xg6481mvdkdz9vwg87n7rpbvdkavsvhyxs0")))) + (properties `((upstream-name . "topicmodels"))) + (build-system r-build-system) + (native-inputs + `(("gsl" ,gsl))) + (propagated-inputs + `(("r-modeltools" ,r-modeltools) + ("r-slam" ,r-slam) + ("r-tm" ,r-tm))) + (home-page "https://cran.r-project.org/package=topicmodels") + (synopsis "Topic models") + (description + "This package provides an interface to the C code for @dfn{Latent +Dirichlet Allocation} (LDA) models and @dfn{Correlated Topics Models} (CTM) by +David M. Blei and co-authors and the C++ code for fitting LDA models using +Gibbs sampling by Xuan-Hieu Phan and co-authors.") + (license license:gpl2))) + -- cgit v1.2.3 From 7a19c76f00e9bd6444a2e1f3d313d66232df7d92 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 17:57:12 +0100 Subject: gnu: Add r-stm. * gnu/packages/cran.scm (r-stm): New variable. --- gnu/packages/cran.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9a343ba507..92b48741d1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19530,3 +19530,37 @@ David M. Blei and co-authors and the C++ code for fitting LDA models using Gibbs sampling by Xuan-Hieu Phan and co-authors.") (license license:gpl2))) +(define-public r-stm + (package + (name "r-stm") + (version "1.3.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "stm" version)) + (sha256 + (base32 + "1yyfxaxqc6yq0yq68zhdnhpwpvsyp71dlmivn7zxixfmp932s6cn")))) + (properties `((upstream-name . "stm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-glmnet" ,r-glmnet) + ("r-lda" ,r-lda) + ("r-matrix" ,r-matrix) + ("r-matrixstats" ,r-matrixstats) + ("r-quadprog" ,r-quadprog) + ("r-quanteda" ,r-quanteda) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-slam" ,r-slam) + ("r-stringr" ,r-stringr))) + (home-page "http://www.structuraltopicmodel.com/") + (synopsis "Estimation of the Structural Topic Model") + (description + "The @dfn{Structural Topic Model} (STM) allows researchers to estimate +topic models with document-level covariates. The package also includes tools +for model selection, visualization, and estimation of topic-covariate +regressions.") + (license license:expat))) + -- cgit v1.2.3 From c56a2440048575dcf4cfcf15222183ea58df5d48 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 18:27:31 +0100 Subject: gnu: Add r-polycor. * gnu/packages/cran.scm (r-polycor): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 92b48741d1..f024d0598d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19564,3 +19564,26 @@ for model selection, visualization, and estimation of topic-covariate regressions.") (license license:expat))) +(define-public r-polycor + (package + (name "r-polycor") + (version "0.7-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "polycor" version)) + (sha256 + (base32 + "0wzwzklflbhi8sv9m7ijwr16v9zmkk0j0v4pbcpf32f8lbn3psna")))) + (properties `((upstream-name . "polycor"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix) + ("r-mvtnorm" ,r-mvtnorm))) + (home-page "https://r-forge.r-project.org/projects/polycor/") + (synopsis "Polychoric and polyserial correlations") + (description + "This package provides tools to compute polychoric and polyserial +correlations by quick \"two-step\" methods or ML, optionally with standard +errors; tetrachoric and biserial correlations are special cases.") + (license license:gpl2+))) -- cgit v1.2.3 From 3385908e6b916b5b97b504fac47647eb60a92da1 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 18:32:17 +0100 Subject: gnu: Add r-msm. * gnu/packages/cran.scm (r-msm): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f024d0598d..adc4bd84fe 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19587,3 +19587,31 @@ regressions.") correlations by quick \"two-step\" methods or ML, optionally with standard errors; tetrachoric and biserial correlations are special cases.") (license license:gpl2+))) + +(define-public r-msm + (package + (name "r-msm") + (version "1.6.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "msm" version)) + (sha256 + (base32 + "1d32y8f0vb2dfv3999liigpns788j145nrvd1xpxb9i2lsg8mwgk")))) + (properties `((upstream-name . "msm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-expm" ,r-expm) + ("r-mvtnorm" ,r-mvtnorm) + ("r-survival" ,r-survival))) + (home-page "https://github.com/chjackson/msm") + (synopsis "Multi-state Markov and hidden Markov models in continuous time") + (description + "This package provides functions for fitting continuous-time Markov and +hidden Markov multi-state models to longitudinal data. It was designed for +processes observed at arbitrary times in continuous time (panel data) but some +other observation schemes are supported. Both Markov transition rates and the +hidden Markov output process can be modelled in terms of covariates, which may +be constant or piecewise-constant in time.") + (license license:gpl2+))) -- cgit v1.2.3 From 07f3e9b93c8421e046f6af5635a059e065481799 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 18:32:48 +0100 Subject: gnu: Add r-ltm. * gnu/packages/cran.scm (r-ltm): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index adc4bd84fe..238fc5c65a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19615,3 +19615,31 @@ other observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time.") (license license:gpl2+))) + +(define-public r-ltm + (package + (name "r-ltm") + (version "1.1-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ltm" version)) + (sha256 + (base32 + "1qrgzwx5l58qf5rfp1knxc84r0g943q5sdr3ky74zzwpnmrf2vf7")))) + (properties `((upstream-name . "ltm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-msm" ,r-msm) + ("r-polycor" ,r-polycor))) + (home-page "https://github.com/drizopoulos/ltm") + (synopsis "Latent trait models under IRT") + (description + "This is a package supporting the analysis of multivariate dichotomous +and polytomous data using latent trait models under the Item Response Theory +approach. It includes the Rasch, the Two-Parameter Logistic, the Birnbaum's +Three-Parameter, the Graded Response, and the Generalized Partial Credit +Models.") + (license license:gpl2+))) + -- cgit v1.2.3 From 8ef53c2255841a8a0f3504d031f69e8765d9a572 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 13:30:50 +0100 Subject: gnu: Add r-mi. * gnu/packages/cran.scm (r-mi): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 238fc5c65a..32c6663780 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19643,3 +19643,28 @@ Three-Parameter, the Graded Response, and the Generalized Partial Credit Models.") (license license:gpl2+))) +(define-public r-mi + (package + (name "r-mi") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "mi" version)) + (sha256 + (base32 + "1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l")))) + (properties `((upstream-name . "mi"))) + (build-system r-build-system) + (propagated-inputs + `(("r-arm" ,r-arm) + ("r-matrix" ,r-matrix))) + (home-page "http://www.stat.columbia.edu/~gelman/") + (synopsis "Missing data imputation and model checking") + (description + "This package provides functions for data manipulation, imputing missing +values in an approximate Bayesian framework, diagnostics of the models used to +generate the imputations, confidence-building mechanisms to validate some of +the assumptions of the imputation algorithm, and functions to analyze multiply +imputed data sets with the appropriate degree of sampling uncertainty.") + (license license:gpl2+))) -- cgit v1.2.3 From 247bd124dbbaa5f1f24920aade3f2a4c2db7e7d2 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 13:31:48 +0100 Subject: gnu: Add r-matrixcalc. * gnu/packages/cran.scm (r-matrixcalc): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 32c6663780..1902ea4f08 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19668,3 +19668,25 @@ generate the imputations, confidence-building mechanisms to validate some of the assumptions of the imputation algorithm, and functions to analyze multiply imputed data sets with the appropriate degree of sampling uncertainty.") (license license:gpl2+))) + +(define-public r-matrixcalc + (package + (name "r-matrixcalc") + (version "1.0-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "matrixcalc" version)) + (sha256 + (base32 + "1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp")))) + (properties `((upstream-name . "matrixcalc"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/matrixcalc/") + (synopsis "Collection of functions for matrix calculations") + (description + "This package provides a collection of functions to support matrix +calculations for probability, econometric and numerical analysis. There are +additional functions that are comparable to APL functions which are useful for +actuarial models such as pension mathematics.") + (license license:gpl2+))) -- cgit v1.2.3 From 3d7115398f3cb1be7609f9ff852292db7c3ac78a Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:07:00 +0100 Subject: gnu: Add r-sem. * gnu/packages/cran.scm (r-sem): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1902ea4f08..30eee24d60 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19690,3 +19690,30 @@ calculations for probability, econometric and numerical analysis. There are additional functions that are comparable to APL functions which are useful for actuarial models such as pension mathematics.") (license license:gpl2+))) + +(define-public r-sem + (package + (name "r-sem") + (version "3.1-9") + (source + (origin + (method url-fetch) + (uri (cran-uri "sem" version)) + (sha256 + (base32 + "1f9c6g6pfx66gd2pappcsqh484ah6a0x4z47hpd46rah0817hcsa")))) + (properties `((upstream-name . "sem"))) + (build-system r-build-system) + (propagated-inputs + `(("r-boot" ,r-boot) + ("r-mass" ,r-mass) + ("r-matrixcalc" ,r-matrixcalc) + ("r-mi" ,r-mi))) + (home-page "https://cran.r-project.org/package=sem") + (synopsis "Structural equation models") + (description + "This package provides functions for fitting general linear structural +equation models (with observed and latent variables) using the RAM approach, +and for fitting structural equations in observed-variable models by two-stage +least squares.") + (license license:gpl2+))) -- cgit v1.2.3 From 27d9764d063b0f607fe7635366eedea166f7fda7 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:07:41 +0100 Subject: gnu: Add r-semtools. * gnu/packages/cran.scm (r-semtools): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 30eee24d60..67546a513c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19717,3 +19717,24 @@ equation models (with observed and latent variables) using the RAM approach, and for fitting structural equations in observed-variable models by two-stage least squares.") (license license:gpl2+))) + +(define-public r-semtools + (package + (name "r-semtools") + (version "0.5-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "semTools" version)) + (sha256 + (base32 + "1zj841pszfsikzp82cmh463qyc4xhdrqjqcnhc2r8mcflv12irv6")))) + (properties `((upstream-name . "semTools"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lavaan" ,r-lavaan))) + (home-page "https://github.com/simsem/semTools/wiki") + (synopsis "Useful tools for structural equation modeling") + (description + "This package provides useful tools for structural equation modeling.") + (license license:gpl2+))) -- cgit v1.2.3 From 8b217feb3b242484de1917a1c19402281eb95cf7 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:08:09 +0100 Subject: gnu: Add r-regsem. * gnu/packages/cran.scm (r-regsem): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 67546a513c..b69311a39b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19738,3 +19738,31 @@ least squares.") (description "This package provides useful tools for structural equation modeling.") (license license:gpl2+))) + +(define-public r-regsem + (package + (name "r-regsem") + (version "1.3.9") + (source + (origin + (method url-fetch) + (uri (cran-uri "regsem" version)) + (sha256 + (base32 + "1klml4bp76mplipxaca7fk653cjxgdmmiciksxgiglxkzmf2bdps")))) + (properties `((upstream-name . "regsem"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lavaan" ,r-lavaan) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rsolnp" ,r-rsolnp))) + (home-page "https://cran.r-project.org/package=regsem") + (synopsis "Regularized structural equation modeling") + (description + "This package uses both ridge and lasso penalties (and extensions) to +penalize specific parameters in structural equation models. The package +offers additional cost functions, cross validation, and other extensions +beyond traditional structural equation models. It also contains a function to +perform @dfn{exploratory mediation} (XMed).") + (license license:gpl2+))) -- cgit v1.2.3 From d228795210de4535d817f8fbc696e82c0800e2f3 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:08:37 +0100 Subject: gnu: Add r-stanheaders. * gnu/packages/cran.scm (r-stanheaders): New variable. --- gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b69311a39b..1f778d73d1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19766,3 +19766,39 @@ offers additional cost functions, cross validation, and other extensions beyond traditional structural equation models. It also contains a function to perform @dfn{exploratory mediation} (XMed).") (license license:gpl2+))) + +(define-public r-stanheaders + (package + (name "r-stanheaders") + (version "2.19.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "StanHeaders" version)) + (sha256 + (base32 + "0kyka130sin4nbji7p840394ynhmaynv9jyi94ddbplj83i2nhx3")))) + (properties `((upstream-name . "StanHeaders"))) + (build-system r-build-system) + (inputs `(("pandoc" ,ghc-pandoc))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://mc-stan.org/") + (synopsis "C++ header files for Stan") + (description + "The C++ header files of the Stan project are provided by this package. +There is a shared object containing part of the @code{CVODES} library, but it +is not accessible from R. @code{r-stanheaders} is only useful for developers +who want to utilize the @code{LinkingTo} directive of their package's +DESCRIPTION file to build on the Stan library without incurring unnecessary +dependencies. + +The Stan project develops a probabilistic programming language that implements +full or approximate Bayesian statistical inference via Markov Chain Monte +Carlo or variational methods and implements (optionally penalized) maximum +likelihood estimation via optimization. The Stan library includes an advanced +automatic differentiation scheme, templated statistical and linear algebra +functions that can handle the automatically differentiable scalar types (and +doubles, ints, etc.), and a parser for the Stan language. The @code{r-rstan} +package provides user-facing R functions to parse, compile, test, estimate, +and analyze Stan models.") + (license license:bsd-3))) -- cgit v1.2.3 From da9f63eeea22f705d9104464ba96b222f6f779ad Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:09:10 +0100 Subject: gnu: Add r-rpf. * gnu/packages/cran.scm (r-rpf): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1f778d73d1..2d00c11201 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19802,3 +19802,29 @@ doubles, ints, etc.), and a parser for the Stan language. The @code{r-rstan} package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.") (license license:bsd-3))) + +(define-public r-rpf + (package + (name "r-rpf") + (version "0.62") + (source + (origin + (method url-fetch) + (uri (cran-uri "rpf" version)) + (sha256 + (base32 + "1vgqhwi676bi9jjxljnxblw65b5szjwbp87wnsabc11vfjzc9wki")))) + (properties `((upstream-name . "rpf"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mvtnorm" ,r-mvtnorm) + ("r-rcppeigen" ,r-rcppeigen))) + (home-page "https://github.com/jpritikin/rpf") + (synopsis "Response probability functions") + (description + "The purpose of this package is to factor out logic and math common to +Item Factor Analysis fitting, diagnostics, and analysis. It is envisioned as +core support code suitable for more specialized IRT packages to build upon. +Complete access to optimized C functions is made available with +@code{R_RegisterCCallable()}.") + (license license:gpl3+))) -- cgit v1.2.3 From 3be13aa8ca8044e7e77e142f7fab489044a06663 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:09:42 +0100 Subject: gnu: Add r-openmx. * gnu/packages/cran.scm (r-openmx): New variable. --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2d00c11201..96f7fd034e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19828,3 +19828,35 @@ core support code suitable for more specialized IRT packages to build upon. Complete access to optimized C functions is made available with @code{R_RegisterCCallable()}.") (license license:gpl3+))) + +(define-public r-openmx + (package + (name "r-openmx") + (version "2.15.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "OpenMx" version)) + (sha256 + (base32 + "1wbzhmyb1lnk39dkcyccmblxvniwsghh0jd94x05pk6yrcq8im5v")))) + (properties `((upstream-name . "OpenMx"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-digest" ,r-digest) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rpf" ,r-rpf) + ("r-stanheaders" ,r-stanheaders))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://openmx.ssri.psu.edu") + (synopsis "Extended structural equation modelling") + (description + "This package allows for the estimation of a wide variety of advanced +multivariate statistical models. It consists of a library of functions and +optimizers that allow you to quickly and flexibly define an SEM model and +estimate parameters given observed data.") + (license license:asl2.0))) -- cgit v1.2.3 From fe0020609a2e6287b31aae1159cb11dfc9506ca2 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:10:25 +0100 Subject: gnu: Add r-kutils. * gnu/packages/cran.scm (r-kutils): New variable. --- gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 96f7fd034e..bda87d1a2d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19860,3 +19860,34 @@ multivariate statistical models. It consists of a library of functions and optimizers that allow you to quickly and flexibly define an SEM model and estimate parameters given observed data.") (license license:asl2.0))) + +(define-public r-kutils + (package + (name "r-kutils") + (version "1.69") + (source + (origin + (method url-fetch) + (uri (cran-uri "kutils" version)) + (sha256 + (base32 + "12pg26a85h0jxlfcyai68dbh4bq1gnq8v1ngi8k9qvafbrpc6gx8")))) + (properties `((upstream-name . "kutils"))) + (build-system r-build-system) + (propagated-inputs + `(("r-foreign" ,r-foreign) + ("r-lavaan" ,r-lavaan) + ("r-openxlsx" ,r-openxlsx) + ("r-plyr" ,r-plyr) + ("r-runit" ,r-runit) + ("r-xtable" ,r-xtable))) + (home-page "https://cran.r-project.org/package=kutils") + (synopsis "Project management tools") + (description + "This package provides tools for data importation, recoding, and +inspection. There are functions to create new project folders, R code +templates, create uniquely named output directories, and to quickly obtain a +visual summary for each variable in a data frame. The main feature here is +the systematic implementation of the \"variable key\" framework for data +importation and recoding.") + (license license:gpl2))) -- cgit v1.2.3 From c86473c2281cec91bcf166646f565ae7fb1c1547 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:10:55 +0100 Subject: gnu: Add r-rockchalk. * gnu/packages/cran.scm (r-rockchalk): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bda87d1a2d..32b3b23274 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19891,3 +19891,33 @@ visual summary for each variable in a data frame. The main feature here is the systematic implementation of the \"variable key\" framework for data importation and recoding.") (license license:gpl2))) + +(define-public r-rockchalk + (package + (name "r-rockchalk") + (version "1.8.144") + (source + (origin + (method url-fetch) + (uri (cran-uri "rockchalk" version)) + (sha256 + (base32 + "07dp1n155b9gfvk8l30h6bhjbhbylsjxfzns08mryn4mxj3nqpnb")))) + (properties `((upstream-name . "rockchalk"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cardata" ,r-cardata) + ("r-kutils" ,r-kutils) + ("r-lme4" ,r-lme4) + ("r-mass" ,r-mass))) + (home-page "https://cran.r-project.org/package=rockchalk") + (synopsis "Regression estimation and presentation") + (description + "This package provides a collection of functions for interpretation and +presentation of regression analysis. These functions are used to produce the +statistics lectures in @url{http://pj.freefaculty.org/guides}. The package +includes regression diagnostics, regression tables, and plots of interactions +and \"moderator\" variables. The emphasis is on \"mean-centered\" and +\"residual-centered\" predictors. The vignette @code{rockchalk} offers a +fairly comprehensive overview.") + (license license:gpl3+))) -- cgit v1.2.3 From 6998b6f7aa132b2ae1e5e583d8251cc8285c216a Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:11:25 +0100 Subject: gnu: Add r-lisreltor. * gnu/packages/cran.scm (r-lisreltor): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 32b3b23274..36af4f054d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19921,3 +19921,23 @@ and \"moderator\" variables. The emphasis is on \"mean-centered\" and \"residual-centered\" predictors. The vignette @code{rockchalk} offers a fairly comprehensive overview.") (license license:gpl3+))) + +(define-public r-lisreltor + (package + (name "r-lisreltor") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "lisrelToR" version)) + (sha256 + (base32 + "0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5")))) + (properties `((upstream-name . "lisrelToR"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=lisrelToR") + (synopsis "Import output from LISREL into R") + (description + "This is an unofficial package aimed at automating the import of LISREL +output in R.") + (license license:gpl2))) -- cgit v1.2.3 From 1c9089d2fcbfcff37b81af15b2004c6387504af3 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:11:51 +0100 Subject: gnu: Add r-bdgraph. * gnu/packages/cran.scm (r-bdgraph): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 36af4f054d..afbb563684 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19941,3 +19941,27 @@ fairly comprehensive overview.") "This is an unofficial package aimed at automating the import of LISREL output in R.") (license license:gpl2))) + +(define-public r-bdgraph + (package + (name "r-bdgraph") + (version "2.62") + (source + (origin + (method url-fetch) + (uri (cran-uri "BDgraph" version)) + (sha256 + (base32 + "1b1vfar940swvn3pcil848qsp8ji50fjjll8jjzp6y2adx0f8pby")))) + (properties `((upstream-name . "BDgraph"))) + (build-system r-build-system) + (propagated-inputs + `(("r-igraph" ,r-igraph))) + (home-page "https://www.uva.nl/profile/a.mohammadi") + (synopsis "Bayesian structure learning in graphical models") + (description + "This package provides statistical tools for Bayesian structure learning +in undirected graphical models for continuous, discrete, and mixed data. It +uses a trans-dimensional @dfn{Markov Chain Monte Carlo} (MCMC) approach based +on a continuous-time birth-death process.") + (license license:gpl2+))) -- cgit v1.2.3 From 2919b3ce40b18d73c3348cc59008f6d2be4a0b3e Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:12:19 +0100 Subject: gnu: Add r-ggm. * gnu/packages/cran.scm (r-ggm): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index afbb563684..b528e0bf9d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19965,3 +19965,25 @@ in undirected graphical models for continuous, discrete, and mixed data. It uses a trans-dimensional @dfn{Markov Chain Monte Carlo} (MCMC) approach based on a continuous-time birth-death process.") (license license:gpl2+))) + +(define-public r-ggm + (package + (name "r-ggm") + (version "2.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggm" version)) + (sha256 + (base32 + "1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3")))) + (properties `((upstream-name . "ggm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-igraph" ,r-igraph))) + (home-page "https://cran.r-project.org/package=ggm") + (synopsis "Functions for graphical Markov models") + (description + "This package provides functions and datasets for maximum likelihood +fitting of some classes of graphical Markov models.") + (license license:gpl2+))) -- cgit v1.2.3 From d74e9f8fe9dca2960b3108d4c4ce5937df7c1635 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:12:49 +0100 Subject: gnu: Add r-d3network. * gnu/packages/cran.scm (r-d3network): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b528e0bf9d..99b7805190 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19987,3 +19987,27 @@ on a continuous-time birth-death process.") "This package provides functions and datasets for maximum likelihood fitting of some classes of graphical Markov models.") (license license:gpl2+))) + +(define-public r-d3network + (package + (name "r-d3network") + (version "0.5.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "d3Network" version)) + (sha256 + (base32 + "1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw")))) + (properties `((upstream-name . "d3Network"))) + (build-system r-build-system) + (propagated-inputs + `(("r-plyr" ,r-plyr) + ("r-rjson" ,r-rjson) + ("r-whisker" ,r-whisker))) + (home-page "http://christophergandrud.github.io/d3Network/") + (synopsis "Create D3 JavaScript network, tree, dendrogram, and Sankey graphs") + (description + "This packages is intended to make it easy to create D3 JavaScript +network, tree, dendrogram, and Sankey graphs from R using data frames.") + (license license:gpl3+))) -- cgit v1.2.3 From 50de6fde50470db76372d5df4acbcba94c61b7d2 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:15:00 +0100 Subject: gnu: Add r-qgraph. * gnu/packages/cran.scm (r-qgraph): New variable. --- gnu/packages/cran.scm | 49 +++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 49 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 99b7805190..8a0dc2de48 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20011,3 +20011,52 @@ fitting of some classes of graphical Markov models.") "This packages is intended to make it easy to create D3 JavaScript network, tree, dendrogram, and Sankey graphs from R using data frames.") (license license:gpl3+))) + +(define-public r-qgraph + (package + (name "r-qgraph") + (version "1.6.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "qgraph" version)) + (sha256 + (base32 + "1glg814h7fwl1jfm6dw1d9i80bilmj5jcjjrfln15byrdh4mm1j3")))) + (properties `((upstream-name . "qgraph"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-bdgraph" ,r-bdgraph) + ("r-colorspace" ,r-colorspace) + ("r-corpcor" ,r-corpcor) + ("r-d3network" ,r-d3network) + ("r-dplyr" ,r-dplyr) + ("r-fdrtool" ,r-fdrtool) + ("r-ggm" ,r-ggm) + ("r-ggplot2" ,r-ggplot2) + ("r-ggraph" ,r-ggraph) + ("r-glasso" ,r-glasso) + ("r-gtools" ,r-gtools) + ("r-hmisc" ,r-hmisc) + ("r-huge" ,r-huge) + ("r-igraph" ,r-igraph) + ("r-jpeg" ,r-jpeg) + ("r-lavaan" ,r-lavaan) + ("r-matrix" ,r-matrix) + ("r-pbapply" ,r-pbapply) + ("r-plyr" ,r-plyr) + ("r-png" ,r-png) + ("r-psych" ,r-psych) + ("r-rcpp" ,r-rcpp) + ("r-reshape2" ,r-reshape2) + ("r-tidygraph" ,r-tidygraph))) + (home-page "http://sachaepskamp.com/qgraph/") + (synopsis "Weighted network visualization and analysis") + (description + "This package implements tools for weighted network visualization and +analysis, as well as Gaussian graphical model computation. It contains graph +plotting methods, and tools for psychometric data visualization and graphical +model estimation. See Epskamp et al. (2012) +@url{doi:10.18637/jss.v048.i04}.") + (license license:gpl2))) -- cgit v1.2.3 From fbf76ad58399d0168ea43a9d4ecf48bba91955d8 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:15:25 +0100 Subject: gnu: Add r-semplot. * gnu/packages/cran.scm (r-semplot): New variable. --- gnu/packages/cran.scm | 39 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8a0dc2de48..fa11470aa7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20060,3 +20060,42 @@ plotting methods, and tools for psychometric data visualization and graphical model estimation. See Epskamp et al. (2012) @url{doi:10.18637/jss.v048.i04}.") (license license:gpl2))) + +(define-public r-semplot + (package + (name "r-semplot") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "semPlot" version)) + (sha256 + (base32 + "0l1v9yi1pv59iwfknw4dh9qskk5y8r347jq1vq13gnfd3bmd71xr")))) + (properties `((upstream-name . "semPlot"))) + (build-system r-build-system) + (propagated-inputs + `(("r-colorspace" ,r-colorspace) + ("r-corpcor" ,r-corpcor) + ("r-igraph" ,r-igraph) + ("r-lavaan" ,r-lavaan) + ("r-lisreltor" ,r-lisreltor) + ("r-openmx" ,r-openmx) + ("r-plyr" ,r-plyr) + ("r-qgraph" ,r-qgraph) + ("r-regsem" ,r-regsem) + ("r-rockchalk" ,r-rockchalk) + ("r-sem" ,r-sem) + ("r-xml" ,r-xml))) + (home-page "https://github.com/SachaEpskamp/semPlot") + (synopsis "Unified visualizations of structural equation models") + (description + "Structural equation modeling (SEM) has a long history of representing +models graphically as path diagrams. The semPlot package for R fills the gap +between advanced, but time-consuming, graphical software and the limited +graphics produced automatically by SEM software. In addition, semPlot offers +more functionality than drawing path diagrams: it can act as a common ground +for importing SEM results into R. Any result usable as input to semPlot can +also be represented in any of the three popular SEM frame-works, as well as +translated to input syntax for the R packages @code{sem} and @code{lavaan}.") + (license license:gpl2))) -- cgit v1.2.3 From 55c067a309e5321e8232849609f64a5790ddec18 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:15:51 +0100 Subject: gnu: Add r-cdm. * gnu/packages/cran.scm (r-cdm): New variable. --- gnu/packages/cran.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fa11470aa7..5bbc975c06 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20099,3 +20099,37 @@ for importing SEM results into R. Any result usable as input to semPlot can also be represented in any of the three popular SEM frame-works, as well as translated to input syntax for the R packages @code{sem} and @code{lavaan}.") (license license:gpl2))) + +(define-public r-cdm + (package + (name "r-cdm") + (version "7.4-19") + (source + (origin + (method url-fetch) + (uri (cran-uri "CDM" version)) + (sha256 + (base32 + "1ln1r3rk004fmk55iy08bjh3vv4wnkb8zg2wj3r9rq7pi8jn8fv4")))) + (properties `((upstream-name . "CDM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mvtnorm" ,r-mvtnorm) + ("r-polycor" ,r-polycor) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page + "https://github.com/alexanderrobitzsch/CDM") + (synopsis "Cognitive diagnosis modeling") + (description + "This package provides functions for cognitive diagnosis modeling and +multidimensional item response modeling for dichotomous and polytomous item +responses. It enables the estimation of the DINA and DINO model, the multiple +group (polytomous) GDINA model, the multiple choice DINA model, the general +diagnostic model (GDM), the structured latent class model (SLCA), and +regularized latent class analysis. See George, Robitzsch, Kiefer, Gross, and +Uenlue (2017) @url{doi:10.18637/jss.v074.i02} for further details on +estimation and the package structure. For tutorials on how to use the CDM +package see George and Robitzsch (2015, @url{doi:10.20982/tqmp.11.3.p189}) as +well as Ravand and Robitzsch (2015).") + (license license:gpl2+))) -- cgit v1.2.3 From 9cc3cfcbe8754dc205e5d08273a56784418115c6 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:16:30 +0100 Subject: gnu: Add r-tam. * gnu/packages/cran.scm (r-tam): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5bbc975c06..d8e6488700 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20133,3 +20133,32 @@ estimation and the package structure. For tutorials on how to use the CDM package see George and Robitzsch (2015, @url{doi:10.20982/tqmp.11.3.p189}) as well as Ravand and Robitzsch (2015).") (license license:gpl2+))) + +(define-public r-tam + (package + (name "r-tam") + (version "3.3-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "TAM" version)) + (sha256 + (base32 + "1rkjp5x6wrk1dfspp1imvfals0wvy4w1wb8a5mhfbnilc7vgnlbq")))) + (properties `((upstream-name . "TAM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cdm" ,r-cdm) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page "http://www.edmeasurementsurveys.com/TAM/Tutorials/") + (synopsis "Test analysis modules") + (description + "This package includes tools for marginal maximum likelihood estimation +and joint maximum likelihood estimation for unidimensional and +multidimensional item response models. The package functionality covers the +Rasch model, 2PL model, 3PL model, generalized partial credit model, +multi-faceted Rasch model, nominal item response model, structured latent +class model, mixture distribution IRT models, and located latent class models. +Latent regression models and plausible value imputation are also supported.") + (license license:gpl2+))) -- cgit v1.2.3 From a21ff0724b3680732fcc48981d656f3656375be4 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:16:57 +0100 Subject: gnu: Add r-erm. * gnu/packages/cran.scm (r-erm): New variable. --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d8e6488700..f307c116df 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20162,3 +20162,35 @@ multi-faceted Rasch model, nominal item response model, structured latent class model, mixture distribution IRT models, and located latent class models. Latent regression models and plausible value imputation are also supported.") (license license:gpl2+))) + +(define-public r-erm + (package + (name "r-erm") + (version "1.0-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "eRm" version)) + (sha256 + (base32 + "11p8j61arq1ih2qi33wf0442vcdbp3zvknzm5aknsifwl4mbzzly")))) + (properties `((upstream-name . "eRm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lattice" ,r-lattice) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/package=eRm") + (synopsis "Extended Rasch modeling") + (description + "This package provides tools to fit @dfn{Rasch models} (RM), @dfn{linear +logistic test models} (LLTM), @dfn{rating scale model} (RSM), @dfn{linear +rating scale models} (LRSM), @dfn{partial credit models} (PCM), and +@dfn{linear partial credit models} (LPCM). Missing values are allowed in the +data matrix. Additional features are the ML estimation of the person +parameters, Andersen's LR-test, item-specific Wald test, Martin-Loef-Test, +nonparametric Monte-Carlo Tests, itemfit and personfit statistics including +infit and outfit measures, ICC and other plots, automated stepwise item +elimination, and a simulation module for various binary data matrices.") + (license license:gpl3))) -- cgit v1.2.3 From 4b9bb70fa5389c326f35d9e71f2aace8d6875bc1 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:17:17 +0100 Subject: gnu: Add r-irtoys. * gnu/packages/cran.scm (r-irtoys): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f307c116df..23d40f60e4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20194,3 +20194,33 @@ nonparametric Monte-Carlo Tests, itemfit and personfit statistics including infit and outfit measures, ICC and other plots, automated stepwise item elimination, and a simulation module for various binary data matrices.") (license license:gpl3))) + +(define-public r-irtoys + (package + (name "r-irtoys") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "irtoys" version)) + (sha256 + (base32 + "0h6iiaxikhbxhbyksbjnb09qdxinlkwr2v9yzs5wslbni14paq5q")))) + (properties `((upstream-name . "irtoys"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ltm" ,r-ltm) + ("r-sm" ,r-sm))) + (home-page "https://cran.r-project.org/package=irtoys") + (synopsis "Collection of functions related to Item Response Theory (IRT)") + (description + "This package provides a collection of functions useful in learning and +practicing @dfn{Item Response Theory} (IRT), which can be combined into larger +programs. It provides basic CTT analysis, a simple common interface to the +estimation of item parameters in IRT models for binary responses with three +different programs (ICL, BILOG-MG, and ltm), ability estimation (MLE, BME, +EAP, WLE, plausible values), item and person fit statistics, scaling +methods (MM, MS, Stocking-Lord, and the complete Hebaera method), and a rich +array of parametric and non-parametric (kernel) plots. It estimates and plots +Haberman's interaction model when all items are dichotomously scored.") + (license license:gpl2+))) -- cgit v1.2.3 From 0a7a3634921115338d32dfbca18633e6f4234ad2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:51:08 +0100 Subject: gnu: r-sp: Update to 1.4-0. * gnu/packages/cran.scm (r-sp): Update to 1.4-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 23d40f60e4..4d79205307 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2157,13 +2157,13 @@ most popular ones.") (define-public r-sp (package (name "r-sp") - (version "1.3-2") + (version "1.4-0") (source (origin (method url-fetch) (uri (cran-uri "sp" version)) (sha256 - (base32 "0kpjsqh3lzqp1m0avsvm54lazlgwfx3hyf0av3mvbyslsanj42ll")))) + (base32 "0mgjrlviv6qapgpiqdjcbsygzfs8bf5c64krh2rk555vf5njmnh7")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) -- cgit v1.2.3 From b47b08fc478b2cff1f9bcf900d35fa24b1b113a4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:51:17 +0100 Subject: gnu: r-squarem: Update to 2020.2. * gnu/packages/cran.scm (r-squarem): Update to 2020.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4d79205307..d31e953fff 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2636,14 +2636,14 @@ contexts.") (define-public r-squarem (package (name "r-squarem") - (version "2020.1") + (version "2020.2") (source (origin (method url-fetch) (uri (cran-uri "SQUAREM" version)) (sha256 (base32 - "0v4ax1v8diw2w7fdhfzz1z0bwixkmcrc39ax3y116f399rc06qbs")))) + "1j6sa93xjvynnzx9jx79a3fysbykmbqyknknsqif5bcha6xp6cvf")))) (properties `((upstream-name . "SQUAREM"))) (build-system r-build-system) (home-page "https://coah.jhu.edu/people/Faculty_personal_Pages/Varadhan.html") -- cgit v1.2.3 From 5fe7834417d94b2ec906e3b2d6d45d95ffa4d7f5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:51:28 +0100 Subject: gnu: r-tsp: Update to 1.1-9. * gnu/packages/cran.scm (r-tsp): Update to 1.1-9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d31e953fff..d43ae5a350 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3888,14 +3888,14 @@ timeout. It can also poll several processes at once.") (define-public r-tsp (package (name "r-tsp") - (version "1.1-8") + (version "1.1-9") (source (origin (method url-fetch) (uri (cran-uri "TSP" version)) (sha256 (base32 - "0g44f2a4m7rfx6y51cdbr6vcmmpbwgyzpvfjksq3lb7gcpbr7xrx")))) + "183m6crb0dv17llj86059n3hbgsahbhfcqlx0ijdzkssg11i1cy7")))) (properties `((upstream-name . "TSP"))) (build-system r-build-system) (propagated-inputs `(("r-foreach" ,r-foreach))) -- cgit v1.2.3 From a7b7fba0e2d502f87dced487ec1c674cedec26a8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:51:37 +0100 Subject: gnu: r-vctrs: Update to 0.2.3. * gnu/packages/cran.scm (r-vctrs): Update to 0.2.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d43ae5a350..302deee086 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4068,14 +4068,14 @@ to variables on the left-hand side of the assignment.") (define-public r-vctrs (package (name "r-vctrs") - (version "0.2.2") + (version "0.2.3") (source (origin (method url-fetch) (uri (cran-uri "vctrs" version)) (sha256 (base32 - "008xjmlj5a5vm303wxac7bliamqwaj7mcj0jv6n9ibc8p8h93aqd")))) + "1pnjnxp1pwsr083qa6xp5akls6q0pnjz8pq2m9d7z3kc1886sw8w")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) -- cgit v1.2.3 From f069fba9dfe9a7c4d4911bd8e578e6824e1f514b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:51:48 +0100 Subject: gnu: r-doby: Update to 4.6.5. * gnu/packages/cran.scm (r-doby): Update to 4.6.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 302deee086..9937e363d1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6755,14 +6755,14 @@ the work.") (define-public r-doby (package (name "r-doby") - (version "4.6-4.1") + (version "4.6.5") (source (origin (method url-fetch) (uri (cran-uri "doBy" version)) (sha256 (base32 - "10qyvavk1pc8rf94q5dd0wrlky145f8ia2p0k8clri5imsrikiqx")))) + "1ckazh701b4ilg8bj17ji903538jmb49d997gm49ah5j5jc1x0g7")))) (properties `((upstream-name . "doBy"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 17c98b536cbfe3f5fef35ecbbd09093261403896 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:52:03 +0100 Subject: gnu: r-rgl: Update to 0.100.50. * gnu/packages/cran.scm (r-rgl): Update to 0.100.50. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9937e363d1..725bd6bca1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9310,14 +9310,14 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "0.100.47") + (version "0.100.50") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "19jxf6hz3dsmya6wdgxc3qi5c1pcksizpp0grylpdidsry4ig4pl")))) + "165p932ml7dpjkm41zc47p5cdxar69il0m5yvg0avi8q01vr17ay")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) -- cgit v1.2.3 From f4c29145316ab98af22235754dfb3ba0475212f0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:52:11 +0100 Subject: gnu: r-dalex: Update to 1.0. * gnu/packages/cran.scm (r-dalex): Update to 1.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 725bd6bca1..e3d28cc78c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15142,14 +15142,14 @@ engine (Salmon et al., 2011) as provided by the package @code{sitmo}.") (define-public r-dalex (package (name "r-dalex") - (version "0.4.9") + (version "1.0") (source (origin (method url-fetch) (uri (cran-uri "DALEX" version)) (sha256 (base32 - "1zviaf7530v8w996lbma0vplabrapgwldi7h70pr0439sxaqd421")))) + "0fcyk1zhpw5yyppyw45rplx8603mrbp4vxq8398h2lswgy1nmls4")))) (properties `((upstream-name . "DALEX"))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2))) -- cgit v1.2.3 From f2bb1ae03c28c03619e807490e20e230df9c7781 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:52:19 +0100 Subject: gnu: r-acebayes: Update to 1.9. * gnu/packages/cran.scm (r-acebayes): Update to 1.9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e3d28cc78c..349c2c5f26 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17038,14 +17038,14 @@ Latin Hypercube Samples.") (define-public r-acebayes (package (name "r-acebayes") - (version "1.8") + (version "1.9") (source (origin (method url-fetch) (uri (cran-uri "acebayes" version)) (sha256 (base32 - "1xm6bw0qm2vlcrk274x0bawzb2lnacb1wsmzba5mg3i75a55pqln")))) + "1imfwm1vpbb24vfmfn1nljhmaz8429mwjihw34892p387s8h7xz2")))) (properties `((upstream-name . "acebayes"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 3df9f357ecb24325ac8b448da1fa2fd52407a093 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:52:28 +0100 Subject: gnu: r-fda: Update to 2.4.8.1. * gnu/packages/cran.scm (r-fda): Update to 2.4.8.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 349c2c5f26..8e34e42bc3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17989,14 +17989,14 @@ actigraphy-measured activity counts data.") (define-public r-fda (package (name "r-fda") - (version "2.4.8") + (version "2.4.8.1") (source (origin (method url-fetch) (uri (cran-uri "fda" version)) (sha256 (base32 - "0n39rzbhg1hipzn51rzmbchn2358qgapg08iv7lmiqj5y7i9qns2")))) + "0g50kj1dx7zarjv0lgwyzd2c7bv6di7nkndmywday5vjywgl8m7a")))) (properties `((upstream-name . "fda"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 970d8139376a9046473c5f3b7f5cd0c361377807 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:52:36 +0100 Subject: gnu: r-forecast: Update to 8.11. * gnu/packages/cran.scm (r-forecast): Update to 8.11. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8e34e42bc3..eb088466e2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19283,14 +19283,14 @@ Raftery, Appl.Statistics, 1989); it includes inference and basic methods.") (define-public r-forecast (package (name "r-forecast") - (version "8.10") + (version "8.11") (source (origin (method url-fetch) (uri (cran-uri "forecast" version)) (sha256 (base32 - "0jccr2wg7sii38lyqrs58fkxf2az7nw6v0jya27hpbz9bg8ib3kr")))) + "0ayidhnk9cxav2qi83jrvqlg2jh4zlf4lki4xw48gdqsmjvih9x1")))) (properties `((upstream-name . "forecast"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 7c138b11491164271e73b2c1a1ea6433fd73b570 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:52:45 +0100 Subject: gnu: r-regsem: Update to 1.5.2. * gnu/packages/cran.scm (r-regsem): Update to 1.5.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index eb088466e2..069ce2e963 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19742,14 +19742,14 @@ least squares.") (define-public r-regsem (package (name "r-regsem") - (version "1.3.9") + (version "1.5.2") (source (origin (method url-fetch) (uri (cran-uri "regsem" version)) (sha256 (base32 - "1klml4bp76mplipxaca7fk653cjxgdmmiciksxgiglxkzmf2bdps")))) + "0ch057010xfsw0nqcsarzakdbiplvxaldyqlbbacspqs65ax1yk7")))) (properties `((upstream-name . "regsem"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 1381743bbe70dc6afbc40a6be88eb93d6c947f65 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:52:54 +0100 Subject: gnu: r-stanheaders: Update to 2.19.2. * gnu/packages/cran.scm (r-stanheaders): Update to 2.19.2. [native-inputs]: Add r-knitr. --- gnu/packages/cran.scm | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 069ce2e963..50b3309dce 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19770,18 +19770,20 @@ perform @dfn{exploratory mediation} (XMed).") (define-public r-stanheaders (package (name "r-stanheaders") - (version "2.19.0") + (version "2.19.2") (source (origin (method url-fetch) (uri (cran-uri "StanHeaders" version)) (sha256 (base32 - "0kyka130sin4nbji7p840394ynhmaynv9jyi94ddbplj83i2nhx3")))) + "0cmk0fzczx7dcywcw1dhm6gfq84qlsx77qrsk4z3bf3dhr4bznam")))) (properties `((upstream-name . "StanHeaders"))) (build-system r-build-system) (inputs `(("pandoc" ,ghc-pandoc))) - (native-inputs `(("gfortran" ,gfortran))) + (native-inputs + `(("gfortran" ,gfortran) + ("r-knitr" ,r-knitr))) ; for vignettes (home-page "https://mc-stan.org/") (synopsis "C++ header files for Stan") (description -- cgit v1.2.3 From 01d34f1a508947d784128b682f71dcfd9f80a900 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:53:06 +0100 Subject: gnu: r-openmx: Update to 2.17.2. * gnu/packages/cran.scm (r-openmx): Update to 2.17.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 50b3309dce..9c9fd6982b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19834,14 +19834,14 @@ Complete access to optimized C functions is made available with (define-public r-openmx (package (name "r-openmx") - (version "2.15.5") + (version "2.17.2") (source (origin (method url-fetch) (uri (cran-uri "OpenMx" version)) (sha256 (base32 - "1wbzhmyb1lnk39dkcyccmblxvniwsghh0jd94x05pk6yrcq8im5v")))) + "092xbwgi72ihxv45qmzm6lv0470rsrqsn7l2jh61jnkx95n72zbb")))) (properties `((upstream-name . "OpenMx"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 20639438e346efe497ace4874513e2c0badd5b1e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:53:15 +0100 Subject: gnu: r-ggm: Update to 2.5. * gnu/packages/cran.scm (r-ggm): Update to 2.5. [propagated-inputs]: Add r-graph. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9c9fd6982b..c7867f3000 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19971,18 +19971,19 @@ on a continuous-time birth-death process.") (define-public r-ggm (package (name "r-ggm") - (version "2.3") + (version "2.5") (source (origin (method url-fetch) (uri (cran-uri "ggm" version)) (sha256 (base32 - "1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3")))) + "11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di")))) (properties `((upstream-name . "ggm"))) (build-system r-build-system) (propagated-inputs - `(("r-igraph" ,r-igraph))) + `(("r-graph" ,r-graph) + ("r-igraph" ,r-igraph))) (home-page "https://cran.r-project.org/package=ggm") (synopsis "Functions for graphical Markov models") (description -- cgit v1.2.3 From 5d947fab43c293b03a8a2fe618e48a9733a627c0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:53:39 +0100 Subject: gnu: r-qgraph: Update to 1.6.5. * gnu/packages/cran.scm (r-qgraph): Update to 1.6.5. [propagated-inputs]: Remove r-ggm. --- gnu/packages/cran.scm | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c7867f3000..b97cd06a72 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20018,14 +20018,14 @@ network, tree, dendrogram, and Sankey graphs from R using data frames.") (define-public r-qgraph (package (name "r-qgraph") - (version "1.6.4") + (version "1.6.5") (source (origin (method url-fetch) (uri (cran-uri "qgraph" version)) (sha256 (base32 - "1glg814h7fwl1jfm6dw1d9i80bilmj5jcjjrfln15byrdh4mm1j3")))) + "0pwys9irxvp0ap158drplyypkplbmwqinv0fmlsblk7q875cr592")))) (properties `((upstream-name . "qgraph"))) (build-system r-build-system) (propagated-inputs @@ -20036,7 +20036,6 @@ network, tree, dendrogram, and Sankey graphs from R using data frames.") ("r-d3network" ,r-d3network) ("r-dplyr" ,r-dplyr) ("r-fdrtool" ,r-fdrtool) - ("r-ggm" ,r-ggm) ("r-ggplot2" ,r-ggplot2) ("r-ggraph" ,r-ggraph) ("r-glasso" ,r-glasso) -- cgit v1.2.3 From 051d8f439ee6e715f3d483f24e2cd02664911236 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:53:56 +0100 Subject: gnu: r-mice: Update to 3.8.0. * gnu/packages/cran.scm (r-mice): Update to 3.8.0. [propagated-inputs]: Remove r-mass, r-mitml, r-nnet, r-rlang, r-rpart, and r-survival; add r-tidyr. --- gnu/packages/cran.scm | 11 +++-------- 1 file changed, 3 insertions(+), 8 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b97cd06a72..f074cd3de8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3357,26 +3357,21 @@ analysis of multiply imputed data sets.") (define-public r-mice (package (name "r-mice") - (version "3.7.0") + (version "3.8.0") (source (origin (method url-fetch) (uri (cran-uri "mice" version)) (sha256 (base32 - "1wx1s1gc07iz63w4m8z0i1n5mc273f89grp5d3hfla7ypicjkasf")))) + "1ibybvigqkkla4xwhqs2w4m6c68alfcdsljx99nn4p92rzb1ig04")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) ("r-dplyr" ,r-dplyr) ("r-lattice" ,r-lattice) - ("r-mass" ,r-mass) - ("r-mitml" ,r-mitml) - ("r-nnet" ,r-nnet) ("r-rcpp" ,r-rcpp) - ("r-rlang" ,r-rlang) - ("r-rpart" ,r-rpart) - ("r-survival" ,r-survival))) + ("r-tidyr" ,r-tidyr))) (home-page "https://cran.r-project.org/web/packages/mice/") (synopsis "Multivariate imputation by chained equations") (description -- cgit v1.2.3 From 36633217c3278e97286536d18c63267224cadba2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 13:54:27 +0100 Subject: gnu: r-rpf: Update to 1.0.2. * gnu/packages/cran.scm (r-rpf): Update to 1.0.2. [propagated-inputs]: Add r-lifecycle and r-rcpp. --- gnu/packages/cran.scm | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f074cd3de8..f8eb99ddda 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19803,18 +19803,20 @@ and analyze Stan models.") (define-public r-rpf (package (name "r-rpf") - (version "0.62") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "rpf" version)) (sha256 (base32 - "1vgqhwi676bi9jjxljnxblw65b5szjwbp87wnsabc11vfjzc9wki")))) + "0j1229qc1mg0vy3msk3yzrpk2r64b8zvnk4rj8q27s38pgz9mix3")))) (properties `((upstream-name . "rpf"))) (build-system r-build-system) (propagated-inputs - `(("r-mvtnorm" ,r-mvtnorm) + `(("r-lifecycle" ,r-lifecycle) + ("r-mvtnorm" ,r-mvtnorm) + ("r-rcpp" ,r-rcpp) ("r-rcppeigen" ,r-rcppeigen))) (home-page "https://github.com/jpritikin/rpf") (synopsis "Response probability functions") -- cgit v1.2.3 From 8017eb0ae8d7fee1669e909b116670da374d0ce3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 22 Feb 2020 14:12:22 +0100 Subject: gnu: r-ggm: Move to (gnu packages bioconductor). * gnu/packages/cran.scm (r-ggm): Move this variable from here... * gnu/packages/bioconductor.scm (r-ggm): ...to here. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ gnu/packages/cran.scm | 23 ----------------------- 2 files changed, 24 insertions(+), 23 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a6ee0253be..9546b466c4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1569,6 +1569,30 @@ expressed genes in DNA microarray experiments.") "This package implements some simple graph handling capabilities for R.") (license license:artistic2.0))) +;; This is a CRAN package, but it depends on a Bioconductor package. +(define-public r-ggm + (package + (name "r-ggm") + (version "2.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggm" version)) + (sha256 + (base32 + "11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di")))) + (properties `((upstream-name . "ggm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-graph" ,r-graph) + ("r-igraph" ,r-igraph))) + (home-page "https://cran.r-project.org/package=ggm") + (synopsis "Functions for graphical Markov models") + (description + "This package provides functions and datasets for maximum likelihood +fitting of some classes of graphical Markov models.") + (license license:gpl2+))) + (define-public r-codedepends (package (name "r-codedepends") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f8eb99ddda..60947c5f3f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19965,29 +19965,6 @@ uses a trans-dimensional @dfn{Markov Chain Monte Carlo} (MCMC) approach based on a continuous-time birth-death process.") (license license:gpl2+))) -(define-public r-ggm - (package - (name "r-ggm") - (version "2.5") - (source - (origin - (method url-fetch) - (uri (cran-uri "ggm" version)) - (sha256 - (base32 - "11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di")))) - (properties `((upstream-name . "ggm"))) - (build-system r-build-system) - (propagated-inputs - `(("r-graph" ,r-graph) - ("r-igraph" ,r-igraph))) - (home-page "https://cran.r-project.org/package=ggm") - (synopsis "Functions for graphical Markov models") - (description - "This package provides functions and datasets for maximum likelihood -fitting of some classes of graphical Markov models.") - (license license:gpl2+))) - (define-public r-d3network (package (name "r-d3network") -- cgit v1.2.3 From 08048ce994a52440162c3a5fc9bf3f17c9affa24 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 24 Feb 2020 09:44:38 +0100 Subject: gnu: Add r-iheatmapr. * gnu/packages/cran.scm (r-iheatmapr): New variable. Co-authored-by: Marcel Schilling --- gnu/packages/cran.scm | 38 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 60947c5f3f..67f14a3b88 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20200,3 +20200,41 @@ methods (MM, MS, Stocking-Lord, and the complete Hebaera method), and a rich array of parametric and non-parametric (kernel) plots. It estimates and plots Haberman's interaction model when all items are dichotomously scored.") (license license:gpl2+))) + +(define-public r-iheatmapr + (package + (name "r-iheatmapr") + (version "0.4.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "iheatmapr" version)) + (sha256 + (base32 + "0s479j9l35xiss599vablxgvg6i2j9zq9sxphsq4vdk3bafg84bw")))) + (properties `((upstream-name . "iheatmapr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-fastcluster" ,r-fastcluster) + ("r-ggdendro" ,r-ggdendro) + ("r-htmlwidgets" ,r-htmlwidgets) + ("r-jsonlite" ,r-jsonlite) + ("r-knitr" ,r-knitr) + ("r-magrittr" ,r-magrittr) + ("r-plyr" ,r-plyr) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-s4vectors" ,r-s4vectors) + ("r-scales" ,r-scales))) + (home-page "https://docs.ropensci.org/iheatmapr") + (synopsis "Interactive, Complex Heatmaps") + (description + "iheatmapr is an R package for building complex, interactive heatmaps +using modular building blocks. \"Complex\" heatmaps are heatmaps in which +subplots along the rows or columns of the main heatmap add more information +about each row or column. For example, a one column additional heatmap may +indicate what group a particular row or column belongs to. Complex heatmaps +may also include multiple side by side heatmaps which show different types of +data for the same conditions. Interactivity can improve complex heatmaps by +providing tooltips with information about each cell and enabling zooming into +interesting features. iheatmapr uses the plotly library for interactivity.") + (license license:expat))) -- cgit v1.2.3