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* guix package: Display generation diffs.Roel Janssen2016-10-26
| | | | | | | * guix/ui.scm (display-profile-content-diff): New variable. * guix/scripts/package.scm (process-query): Use display-profile-content-diff. In collaboration with Benz Schenk.
* import cran: Use URL for Bioconductor 3.4.Ricardo Wurmus2016-10-26
| | | | | * guix/import/cran.scm (%bioconductor-svn-url): Update to release URL for version 3.4.
* import: pypi: All inputs are propagated-inputs by default.Hartmut Goebel2016-10-23
| | | | | * guix/import/pypi.scm (maybe-inputs): Return inputs as "propagated-inputs".
* Use (ice-9 binary-ports) instead of (rnrs io ports).Ludovic Courtès2016-10-19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | This reduces the closure of (guix ui) from 123 to 106 modules. * guix/derivations.scm: Use (ice-9 binary-ports) instead of (rnrs io ports). (map-derivation)[substitute-file]: Use 'read-string' instead of 'get-string-all'. * guix/ftp-client.scm: Likewise. * guix/hash.scm: Likewise. * guix/http-client.scm: Likewise. * guix/pki.scm (ensure-acl, current-acl): Likewise. * guix/scripts/archive.scm (authorize-key)[read-key]: Likewise. * guix/scripts/authenticate.scm (read-canonical-sexp) (read-hash-data): Likewise. * guix/scripts/download.scm: Likewise. * guix/scripts/offload.scm (register-gc-root, remove-gc-roots) (send-files): Likewise. * guix/scripts/publish.scm (lazy-read-file-sexp): Likewise. * guix/scripts/refresh.scm: Likewise. * guix/scripts/substitute.scm (check-acl-initialized): Likewise. * guix/serialization.scm (read-maybe-utf8-string): Likewise. * guix/scripts/hash.scm (guix-hash): Use 'force-output' instead of 'flush-output-port'. * guix/store.scm (process-stderr): Likewise. * guix/tests.scm: Likewise. * guix/utils.scm: Use (ice-9 binary-ports) and autoload (rnrs io ports) for 'make-custom-binary-input-port'.
* lint: Suggest @code instead of quotes.Ludovic Courtès2016-10-19
| | | | | | | | * guix/scripts/lint.scm (%quoted-identifier-rx): New variable. (check-description-style)[check-quotes]: New procedure. Use it. * tests/lint.scm ("description: suggest ornament instead of quotes"): New test.
* grafts: Remove unnecessary 'umask' call.Ludovic Courtès2016-10-17
| | | | | | This is a followup to d72267863382041b84a9712eea354882be72ef55. * guix/build/graft.scm (rewrite-directory): Remove 'umask' call.
* grafts: Apply the right grafts in the presence of multiple outputs.Ludovic Courtès2016-10-17
| | | | | | | | | Fixes <http://bugs.gnu.org/24712>. * guix/grafts.scm (cumulative-grafts): Add grafts for all the outputs of DRV. * tests/grafts.scm ("graft-derivation, replaced derivation has multiple outputs"): New test.
* guix build: Add '--with-graft'.Ludovic Courtès2016-10-17
| | | | | | | | | | * guix/scripts/build.scm (transform-package-inputs/graft): New procedure. (%transformations): Add 'with-graft'. (%transformation-options): Likewise. (show-transformation-options-help): Document it. * tests/scripts-build.scm ("options->transformation, with-graft"): New test. * doc/guix.texi (Package Transformation Options): Document it.
* guix build: Factorize transformation option parsing.Ludovic Courtès2016-10-17
| | | | | * guix/scripts/build.scm (%transformation-options): Introduce 'parser' procedure and use it.
* guix build: Extract '--with-input' replacement spec parsing.Ludovic Courtès2016-10-17
| | | | | | * guix/scripts/build.scm (evaluate-replacement-specs): New procedure. (transform-package-inputs)[not-equal]: Remove. [replacements]: Define in terms of 'evaluate-replacement-specs'.
* import: utils: Remove dependency on (json) module.Alex Kost2016-10-16
| | | | | | | This fixes a regression introduced by commit fbe9c1012820ab72f022a6ec958c35b431ae7a74. * guix/import/utils.scm: Remove unused (json) module.
* graph: Add '%referrer-node-type'.Ludovic Courtès2016-10-15
| | | | | | | | | | * guix/scripts/graph.scm (ensure-store-items): New procedure. (%reference-node-type)[convert]: Use it. (non-derivation-referrers): New procedure. (%referrer-node-type): New variable. (%node-types): Add it. * tests/graph.scm ("referrer DAG"): New test. * doc/guix.texi (Invoking guix graph): Document it.
* grafts: Remove unused variables and confusing monad use.Ludovic Courtès2016-10-15
| | | | | | | * guix/grafts.scm (cumulative-grafts)[return/cache]: Use %STATE-MONAD, not %STORE-MONAD. Remove unused 'origins' variable and unnecessary inner 'cache' variable.
* grafts: 'graft-derivation' does now introduce grafts that shadow other grafts.Ludovic Courtès2016-10-14
| | | | | | | | Partly fixes <http://bugs.gnu.org/24418>. * guix/grafts.scm (cumulative-grafts)[graft-origin?]: New procedure. [dependency-grafts]: Use it in new 'if' around recursive call. * tests/grafts.scm ("graft-derivation, grafts are not shadowed"): New test.
* packages: 'package-grafts' applies grafts on replacement.Ludovic Courtès2016-10-14
| | | | | | | | | | Partly fixes <http://bugs.gnu.org/24418>. * guix/packages.scm (input-graft): Compute 'new' with #:graft? #t. (input-cross-graft): Likewise. * tests/packages.scm ("package-grafts, indirect grafts, cross"): Comment out. ("replacement also grafted"): New test.
* Revert "guix: python-build-system: Fix an outdated comment."Mark H Weaver2016-10-13
| | | | This reverts commit 635a7af45d6e2105ad65d1a9531126cc232a2a50.
* guix: python-build-system: Fix an outdated comment.Hartmut Goebel2016-10-13
| | | | | | The python-build-system uses phases the build and install, but not configure. So the old comment was plain wrong since Sept. 2013, when the build phase has been added.
* grafts: Always make directories #o755.Ludovic Courtès2016-10-10
| | | | | | | | | Fixes <http://bugs.gnu.org/22954>. Reported by Albin <albin@fripost.org> and Jeffrey Serio <serio.jeffrey@gmail.com>. * guix/build/graft.scm (mkdir-p*): New procedure. (rewrite-directory): Use it instead of 'mkdir-p'.
* bournish: Add 'reboot' command.Ludovic Courtès2016-10-10
| | | | | | | Suggested by Ricardo Wurmus. * guix/build/bournish.scm (reboot-command): New procedure. (%commands): Add it.
* substitute: Make download messages more concise.Ludovic Courtès2016-10-10
| | | | | | | | | | 'guix substitute' now displays 2 lines per download instead of 4. Suggested by Ricardo Wurmus. * guix/scripts/substitute.scm (assert-valid-narinfo): Have #:verbose? default to #f. Remove leading newline in message. (process-substitution): Display the URI rather than the store file name. Display two newlines after the substitution.
* import: github: Add .love extension.Efraim Flashner2016-10-10
| | | | | * guix/import/github.scm (find-extension): Add '.love' extension to the list of extensions checked.
* license: Add freebsd-doc.ng02016-10-09
| | | | | | * guix/licenses.scm (freebsd-doc): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* build-system: Add asdf-build-system.Andy Patterson2016-10-08
| | | | | | | | | | * guix/build-system/asdf.scm: New file. * guix/build/asdf-build-system.scm: New file. * guix/build/lisp-utils.scm: New file. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Document 'asdf-build-system'. Signed-off-by: 宋文武 <iyzsong@gmail.com>
* utils: Support defaults in substitute-keyword-arguments.Eric Bavier2016-10-07
| | | | | | | * guix/utils.scm (collect-default-args, expand-default-args): New syntax. (substitute-keyword-arguments): Allow default value declarations. * tests/utils.scm (substitute-keyword-arguments): New test.
* utils: Fix default-keyword-arguments.Eric Bavier2016-10-07
| | | | | | * guix/utils.scm (default-keyword-arguments): Properly test for present keywords. * tests/utils.scm (default-keyword-arguments): New test.
* guix system: Return two values when failing to talk to shepherd.Ludovic Courtès2016-10-06
| | | | | | | | | | | | Before that, when 'guix system reconfigure' failed to talk to shepherd and a 'system-error' was raised, we would get a "too few values returned to continuation" error, which would prevent GRUB from being installed. Reported by fps on #guix. * guix/scripts/system.scm (warn-on-system-error): Remove. (with-shepherd-error-handling): Inline former 'warn-on-system-error'. Return two values when 'system-error' is raised.
* lint: 'cve' checker reports the replacement's vulnerabilities.Ludovic Courtès2016-10-03
| | | | | | | | | | | Before, 'guix lint -c cve' would report the vulnerabilities of the original package while pretending they are the vulnerabilities of the replacement. * guix/scripts/lint.scm (check-vulnerabilities): Consider the package replacement before calling 'package-vulnerabilities'. * tests/lint.scm ("cve: vulnerability fixed in replacement version"): New test.
* grafts: Allow the replacement to have a different name.Ludovic Courtès2016-10-03
| | | | | | | | | | | | | | * guix/build/graft.scm (replace-store-references): REPLACEMENT is now the full string, not just the hash. (rewrite-directory)[hash-mapping](valid-suffix?): Remove. (hash+suffix): Rename to... (hash+rest): ... this. Change to return the whole string as the second element of the list. Adjust 'match-lambda' expression accordingly; check whether the string length of the origin and replacement match. * tests/grafts.scm ("graft-derivation, grafted item uses a different name"): New test. * doc/guix.texi (Security Updates): Update sentence on the name/version restriction.
* build: Improve Guile 2.2 compatibility.Taylan Ulrich Bayırlı/Kammer2016-09-29
| | | | | | * build-aux/compile-all.scm (compile-file*): Ensure loading of compilation related modules before going parallel. * guix/build/pull.scm (build-guix): Ditto.
* import: utils: Refactor license->symbol.David Craven2016-09-28
| | | | | * guix/import/utils.scm (license->symbol): Work for all licenses. * tests/import-utils.scm (license->symbol): Add test.
* import: utils: Add spdx-string->license.David Craven2016-09-28
| | | | | * guix/import/utils.scm (spdx-string->license): New variable. * guix/licenses.scm (agpl1, fdl1.2+): New variables.
* import: Move string->license to importers.David Craven2016-09-28
| | | | | * guix/import/gem.scm (string->license): Move from (guix import utils). * guix/import/pypi.scm (string->license): Move from (guix import utils).
* import: Reorder imports in (guix import utils).David Craven2016-09-28
| | | | * guix/import/utils.scm (define-module): Reorder imports alphabetically.
* guix build: Gracefully handle packages without source for '-S'.Ludovic Courtès2016-09-27
| | | | | | | | Fixes <http://bugs.gnu.org/22836>. Reported by Ricardo Wurmus <rekado@elephly.net>. * guix/scripts/build.scm (options->derivations): Gracefully handle (package-source p) = #f.
* Add missing exports.Ludovic Courtès2016-09-27
| | | | | | | | | Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com> at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>. * gnu/system/file-systems.scm (%tty-gid): Export. * guix/build-system/python.scm (default-python, default-python2): Export.
* profiles: Build GTK+ input module cache.Ricardo Wurmus2016-09-26
| | | | | * guix/profiles.scm (gtk-im-modules): New procedure. (%default-profile-hooks): Add it.
* profiles: manifest-lookup-package: Optionally match version prefix.Ricardo Wurmus2016-09-26
| | | | | * guix/profiles.scm (manifest-lookup-package): Optionally filter store item matches by version prefix.
* system: grub.cfg uses correct file names when store is not in root partition.Carlos Sánchez de La Lama2016-09-24
| | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/24346>. Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama). * guix/scripts/system.scm (previous-grub-entries): Get the initrd file name from PARAMS. * gnu/system.scm (operating-system-grub.cfg): Use 'operating-system-initrd-file' to retrieve the initrd file name. * gnu/system/grub.scm (strip-mount-point): New procedure. (grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for LINUX and INITRD. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* ui: Do not shadow '_' where it's used as a literal syntax match.Ludovic Courtès2016-09-20
| | | | | | | | | | | | | | | | | | Fixes compilation with Guile 2.1. Reported by Mu Lei. * guix/ui.scm (report-load-error) (warn-about-load-error, read/eval-package-expression): Use 'rest' instead of '_' as the pattern variable name. * gnu/packages.scm (%find-package): Likewise. * guix/scripts/build.scm (transform-package-inputs): Likewise. * guix/scripts/hash.scm (guix-hash): Likewise. * guix/scripts/import/gnu.scm (%options, guix-import-gnu): Likewise. * guix/scripts/import/nix.scm (guix-import-nix): Likewise. * guix/scripts/offload.scm (build-machines): Likewise. * guix/scripts/refresh.scm (%options): Likewise. * guix/scripts/substitute.scm (narinfo-signature->canonical-sexp): Likewise.
* gexp: Store compilers in a hash table for O(1) lookup.Ludovic Courtès2016-09-10
| | | | | | | | | | | | | * guix/gexp.scm (<gexp-compiler>)[predicate]: Remove. [type]: New field. (%gexp-compilers): Turn into a hash table. (register-compiler!, lookup-compiler, lookup-expander): Adjust accordingly. (define-gexp-compiler): Replace 'predicate' by 'record-type'. (derivation-compiler, local-file-compiler, plain-file-compiler) (computed-file-compiler, program-file-compiler, scheme-file-compiler) (file-append-compiler): Adjust accordingly. * guix/packages.scm (package-compiler, origin-compiler): Likewise.
* gexp: Add 'file-append'.Ludovic Courtès2016-09-09
| | | | | | | | | | * guix/gexp.scm (<file-append>): New record type. (file-append): New procedure. (file-append-compiler): New gexp compiler. * tests/gexp.scm ("file-append", "file-append, output") ("file-append, nested", "gexp->file + file-append"): New tests. * doc/guix.texi (G-Expressions): Use it in 'nscd' and 'list-files' examples. Document 'file-append'.
* gexp: Compilers can now provide an "expander".Ludovic Courtès2016-09-09
| | | | | | | | | * guix/gexp.scm (<gexp-compiler>)[expand]: New field. (default-expander, lookup-expander): New procedures. (define-gexp-compiler): Add second pattern to allow for the definition of both a compiler and an expander. (gexp->sexp)[reference->sexp]: Call 'lookup-expander' and use its result.
* gexp: Remove outdated comment.Ludovic Courtès2016-09-09
| | | | * guix/gexp.scm (lower-references): Remove outdated "XXX" comment.
* guix hash: Add --exclude-vcs option.Jan Nieuwenhuizen2016-09-07
| | | | | | | | | | * guix/scripts/hash.scm (show-help): Add help text for --exclude-vcs option. (%options): Add --exclude-vcs option. (guix-hash): Handle exclude-vcs option. * doc/guix.texi ("Invoking guix hash"): Update doc. * tests/guix-hash.sh: Add test. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* packages: Add 'package-superseded' and associated support.Ludovic Courtès2016-09-06
| | | | | | | | | | | | | | This provides a way to mark a package as superseded by another one. Upgrades replace superseded packages with their replacement. * guix/packages.scm (package-superseded, deprecated-package): New procedures. * gnu/packages.scm (%find-package): Check for 'package-superseded'. * guix/scripts/package.scm (transaction-upgrade-entry)[supersede]: New procedure. Call it when 'package-superseded' is true. * tests/guix-build.sh: Add test for a superseded package. * tests/packages.scm ("package-superseded") ("transaction-upgrade-entry, superseded package"): New tests.
* profiles: Export <manifest-pattern> accessors.Ludovic Courtès2016-09-06
| | | | | * guix/profiles.scm (manifest-pattern-name, manifest-pattern-version) (manifest-pattern-output): Export.
* guix package: Build up the transaction incrementally.Ludovic Courtès2016-09-06
| | | | | | | | | | | | | | * guix/scripts/package.scm (upgraded-manifest-entry): Rename to... (transaction-upgrade-entry): ... this. Add 'transaction' parameter and return a transaction. (options->installable): Likewise. [to-upgrade]: Rename to... [upgraded]: ... this, and change to be a transaction. Return a transaction. (options->removable): Likewise. (process-actions): Adjust accordingly. * tests/packages.scm ("transaction-upgrade-entry, zero upgrades") ("transaction-upgrade-entry, one upgrade"): New tests.
* profiles: Add manifest-transaction helper procedures.Ludovic Courtès2016-09-06
| | | | | | | * guix/profiles.scm (manifest-transaction-install-entry) (manifest-transaction-remove-pattern) (manifest-transaction-null?): New procedures. * tests/profiles.scm ("manifest-transaction-null?"): New test.
* guix package: Clarify upgrade code.Ludovic Courtès2016-09-06
| | | | | | | * guix/scripts/package.scm (upgradeable?): Rename to... (upgraded-manifest-entry): ... this. Change to take a <manifest-entry> and to return a <manifest-entry>. (options->installable)[to-upgrade]: Adjust accordingly.
* gnupg: Honor $GUIX_GPG_COMMAND and default to 'gpg'.Ludovic Courtès2016-09-06
| | | | * guix/gnupg.scm (%gpg-command): Change to "gpg" or $GUIX_GPG_COMMAND.
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