| Commit message (Collapse) | Author | Age | |
|---|---|---|---|
| * | guix: Upgrade to Bioconductor 3.10. | Ricardo Wurmus | 2019-12-15 |
| | | | | | | * guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10. * guix/import/cran.scm (%bioconductor-version): Same. | ||
| * | Revert "build-system/r: Use %bioconductor-version." | Efraim Flashner | 2019-09-16 |
| | | | | | | | This reverts commit 41ca406fa54e69f61c55b11ffe5cf465192a907c. This commit breaks 'guix pull', as reported by Hao Chen. | ||
| * | build-system/r: Use %bioconductor-version. | Ricardo Wurmus | 2019-09-16 |
| | | | | | | * guix/build-system/r.scm (bioconductor-uri): Use %bioconductor-version instead of hard-coding the version string. | ||
| * | build-system/r: bioconductor-uri: Take optional package type. | Ricardo Wurmus | 2019-08-16 |
| | | | | | | * guix/build-system/r.scm (bioconductor-uri): Take optional TYPE argument to return annotation or experiment URLs. | ||
| * | guix: Update to Bioconductor 3.9. | Ricardo Wurmus | 2019-05-06 |
| | | | | | | * guix/build-system/r.scm (bioconductor-uri): Use 3.9 archive URL. * guix/import/cran.scm (%bioconductor-version): Update to 3.9. | ||
| * | guix: Update to Bioconductor 3.8. | Ricardo Wurmus | 2018-11-06 |
| | | | | | | * guix/import/cran.scm (%bioconductor-version): Update to 3.8. * guix/build-system/r.scm (bioconductor-uri): Update archive URL. | ||
| * | build-system/r: Accept #:r argument. | Ricardo Wurmus | 2018-06-18 |
| | | | | | * guix/build-system/r.scm (lower): Add #:r to private-keywords. | ||
| * | build-system/r: Update to Bioconductor 3.7. | Ricardo Wurmus | 2018-06-05 |
| | | | | | | | This is a follow-up to 41f17554d88795bf35fbfc3e05301a6d2f64cca0. * guix/build-system/r.scm (bioconductor-uri): Update to version 3.7. | ||
| * | guix: Add archive support for bioconductor-uri. | Ricardo Wurmus | 2017-11-07 |
| | | | | | | | * guix/build-system/r.scm (bioconductor-uri): Also return the archive URL. * guix/import/cran.scm (latest-bioconductor-release, fetch-description): Adjust because bioconductor-uri now returns a list. | ||
| * | Use HTTPS for bioconductor.org. | Tobias Geerinckx-Rice | 2017-10-21 |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for bioconductor.org URLs. * gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter) (r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category) (r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews) (r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata) (r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi) (r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray) (r-summarizedexperiment, r-genomicalignments, r-rtracklayer) (r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern) (r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport) (r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid) (r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene) (r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db) (r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db) (r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9) (r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene) (r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10) (r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]: Likewise. * gnu/packages/statistics.scm (r-rcurl)[source]: Likewise. * guix/build-system/r.scm (bioconductor-uri): Likewise. * guix/import/cran.scm (%cran-url, bioconductor-package?) (bioconductor-data-package?, bioconductor-experiment-package?): Likewise. | ||
| * | gnu: r: Rename to r-minimal. | Ricardo Wurmus | 2017-03-17 |
| | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r): Rename to... (r-minimal): ...this new variable. (r-with-recommended-packages): Rename to... (r): ...this. * guix/build-system/r.scm (default-r): Reference r-minimal. * gnu/packages/emacs.scm (emacs-ess)[inputs], gnu/packages/machine-learning.scm (shogun)[inputs], gnu/packages/python.scm (python-rpy2)[inputs], gnu/packages/bioinformatics.scm (ribotaper)[inputs], (couger)[propagated-inputs], (roary)[inputs], (rsem)[inputs], (rcas-web)[inputs]: Change "r" to "r-minimal". | ||
| * | build-system/r: Support "substitutable?" flag. | Ricardo Wurmus | 2016-03-31 |
| | | | | | * guix/build-system/r.scm (r-build): Support the "substitutable?" flag. | ||
| * | build: Add bioconductor-uri procedure. | Ricardo Wurmus | 2015-12-21 |
| | | | | | * guix/build-system/r.scm (bioconductor-uri): New procedure. | ||
| * | build: Add cran-uri procedure. | Ricardo Wurmus | 2015-09-21 |
| | | | | | * guix/build-system/r.scm (cran-uri): New procedure. | ||
| * | build: Add R build system. | Ricardo Wurmus | 2015-08-31 |
| * guix/build-system/r.scm: New file. * guix/build/r-build-system: New file. * Makefile.am (MODULES): Add new files. * doc/guix.texi (Build Systems): Document r-build-system. | |||