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* gnu: glibc-hurd-headers: Use correct "--host".Manolis Ragkousis2016-06-06
| | | | | * gnu/packages/base.scm (glibc/hurd-headers)[arguments]: Use "i586-pc-gnu" instead of "i686-pc-gnu".
* gnu: glibc-hurd: Update to 20160518.Manolis Ragkousis2016-06-06
| | | | | | | | | | | | * gnu/packages/base.scm (glibc/hurd)[version]: Update to version 20160518. [propagated-inputs]: Use hurd-core-headers. [native-inputs]: Remove libpthread's source and "patch/libpthread-patch". [arguments]: Add augment-libc.so and pre-configure-set-pwd phases. Remove prepare-libpthread phase. Stop removing "--with-headers=" from original-configure-flags. * gnu/packages/patches/glibc-hurd-extern-inline.patch: Remove patch. * gnu/packages/patches/libpthread-glibc-preparation.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: pcre: Remove now-unneeded replacement.Ludovic Courtès2016-05-23
| | | | | * gnu/packages/pcre.scm (pcre)[replacement]: Remove. (pcre-fixed): Remove.
* Merge branch 'master' into core-updatesLudovic Courtès2016-05-23
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| * gnu: gnu-pw-mgr: Update to 2.0.Efraim Flashner2016-05-22
| | | | | | | | * gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.
| * gnu: imagemagick: Update to 6.9.4-4.Leo Famulari2016-05-22
| | | | | | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.
| * gnu: Add python2-rope.Lukas Gradl2016-05-22
| | | | | | | | * gnu/packages/python.scm (python2-rope): New variable.
| * gnu: Add gnome-calendar.Kei Yamashita2016-05-21
| | | | | | | | | | | | * gnu/packages/gnome.scm (gnome-calendar): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add envstore.Matthew Jordan2016-05-21
| | | | | | | | | | | | * gnu/package/shellutils.scm: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add sicp.Jan Nieuwenhuizen2016-05-21
| | | | | | | | | | | | * gnu/packages/scheme.scm (sicp): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add dia.Roel Janssen2016-05-21
| | | | | | | | | | | | * gnu/packages/gnome.scm (dia): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: linux-libre: Update to 4.5.5.Mark H Weaver2016-05-20
| | | | | | | | * gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
| * gnu: linux-libre-4.4: Update to 4.4.11.Mark H Weaver2016-05-20
| | | | | | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
| * gnu: Add default gcc-objc++.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/gcc.scm (gcc-objc++): New variable.
| * gnu: Add gcc-objc++-4.9.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
| * gnu: Add default gcc-objc.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/gcc.scm (gcc-objc): New variable.
| * gnu: Add gcc-objc-4.9.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
| * gnu: r-rcpparmadillo: Update to 0.6.700.6.0.Ricardo Wurmus2016-05-20
| | | | | | | | | | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.6.
| * gnu: armadillo: Update to 6.700.7.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/maths.scm (armadillo): Update to 6.700.7.
| * gnu: r-genomation: Update to 1.4.2.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
| * gnu: r-jsonlite: Update to 0.9.20.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
| * gnu: r-plotly: Update to 3.6.0.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
| * gnu: r-matrixstats: Update to 0.50.2.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
| * gnu: r-r-rsp: Update to 0.30.0.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
| * gnu: r-rmarkdown: Update to 0.9.6.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
| * gnu: r-plotrix: Update to 3.6-2.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
| * gnu: r-devtools: Update to 1.11.1.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
| * gnu: r-git2r: Update to 0.15.0.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
| * gnu: r-openssl: Update to 0.9.3.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
| * gnu: r-testthat: Update to 1.0.2.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
| * gnu: r-knitr: Update to 1.13.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-knitr): Update to 1.13.
| * gnu: r-highr: Update to 0.6.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-highr): Update to 0.6.
| * gnu: r-formatr: Update to 1.4.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-formatr): Update to 1.4.
| * gnu: r-evaluate: Update to 0.9.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
| * gnu: r-bh: Update to 1.60.0-2.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
| * gnu: r-dbi: Update to 0.4-1.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
| * gnu: r-rcpp: Update to 0.12.5.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
| * gnu: r-genomicfeatures: Update to 1.24.2.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
| * gnu: r-summarizedexperiment: Update to 1.2.2.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
| * gnu: r-biocparallel: Update to 1.6.2.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
| * gnu: r-annotationdbi: Update to 1.34.2.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
| * gnu: r-variantannotation: Update to 1.18.1.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
| * gnu: r-genomeinfodb: Update to 1.8.1.Ricardo Wurmus2016-05-20
| | | | | | | | * gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
| * gnu: btrfs-progs: Update to 4.5.3.Leo Famulari2016-05-19
| | | | | | | | * gnu/packages/linux.scm (btrfs-progs): Update to 4.5.3.
| * gnu: jemalloc: Update to 4.2.0.Jelle Licht2016-05-19
| | | | | | | | | | | | * gnu/packages/jemalloc.scm (jemalloc): Update to 4.2.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: expat: Fix CVE-2016-0718. Improve fix for CVE-2015-1283.Leo Famulari2016-05-19
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/expat-CVE-2015-1283-refix.patch, gnu/packages/patches/expat-CVE-2016-0718.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xml.scm (expat)[replacement]: New field. (expat/fixed): New variable. [source]: Use new patches.
| * gnu: flann: Do not install .a files.Ludovic Courtès2016-05-19
| | | | | | | | * gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
| * gnu: python: Add 'python' variables for different major/minor versions.Hartmut Goebel2016-05-19
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-2): Rename variable to... (python-2.7): ...this. (python-2): Refer to "python-2.7". (python): Rename variable to... (python-3.4): ...this. (python-3): Refer to "python-3.4". (python): Refer to "python-3". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: flann: Strip .mex file.Ludovic Courtès2016-05-19
| | | | | | | | * gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories.
| * gnu: Add r-biased-urn.Ben Woodcroft2016-05-19
| | | | | | | | * gnu/packages/statistics.scm (r-biased-urn): New variable.
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