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* gnu: Add missing import in bioinformatics.scm.Ludovic Courtès2016-02-25
| | | | | | This is a followup to 1baee94. * gnu/packages/bioinformatics.scm: Add missing import.
* gnu: Add kyotocabinet.Nils Gillmann2016-02-25
| | | | * gnu/packages/databases.scm (kyotocabinet): New variable.
* gnu: Add libBigWig.Ricardo Wurmus2016-02-25
| | | | * gnu/packages/bioinformatics.scm (libbigwig): New variable.
* gnu: guile-json: Update to 0.5.0.Jan Nieuwenhuizen2016-02-25
| | | | | | * gnu/packages/guile.scm (guile-json): Update to 0.5.0. Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu: ardour: Update to 4.7.Ricardo Wurmus2016-02-25
| | | | * gnu/packages/audio.scm (ardour): Update to 4.7.
* gnu: xdg-utils: Propagate xprop and xset.宋文武2016-02-25
| | | | | | Fixes <http://bugs.gnu.org/22755>. * gnu/packages/freedesktop.scm (xdg-utils): Propagate xprop and xset.
* gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739].Leo Famulari2016-02-24
| | | | | | | | | | | | | * gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file. * gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (libssh): Update to 0.7.3. (libssh-0.5): Rename to... (libssh-0.6): ... this. Update to 0.6.5. [source]: Add patch for CVE-2016-0739. (guile-ssh)[inputs]: Use libssh-0.6. Modified-By: Mark H Weaver <mhw@netris.org>
* gnu: libssh2: Update to 1.7.0 [fixes CVE-2016-0787].Leo Famulari2016-02-24
| | | | | | | | * gnu/packages/ssh.scm (libssh2): Update to 1.7.0. (libssh2-1.4): New variable. * gnu/packages/curl.scm (curl)[inputs]: Use libssh4-1.4. Modified-By: Mark H Weaver <mhw@netris.org>
* gnu: gdb: Update to 7.11.Efraim Flashner2016-02-24
| | | | * gnu/packages/gdb.scm (gdb): Update to 7.11.
* gnu: kde-frameworks: Update to 5.19.0.Efraim Flashner2016-02-24
| | | | | * gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.19.0. (extra-cmake-modules): Update to 5.19.0.
* gnu: r-topgo: Add missing input.Ricardo Wurmus2016-02-24
| | | | | * gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add "r-graph".
* gnu: Add r-graph.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-graph): New variable.
* gnu: Add r-org-mm-eg-db.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-org-mm-eg-db): New variable.
* gnu: Add r-org-dm-eg-db.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-org-dm-eg-db): New variable.
* gnu: Add r-org-ce-eg-db.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-org-ce-eg-db): New variable.
* gnu: Add r-org-hs-eg-db.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
* Do not check package freshness during upgrade.Alex Kost2016-02-24
| | | | | | | | | Fixes <http://bugs.gnu.org/22740>. Reported by Andreas Enge <andreas@enge.fr>. * gnu/packages.scm (waiting, ftp-open*, check-package-freshness): Remove. * guix/scripts/package.scm (options->installable): Adjust accordingly. * emacs/guix-main.scm (package->manifest-entry*): Likewise.
* gnu: lsh: lshd now supports X11 forwarding.Ludovic Courtès2016-02-24
| | | | | | | Reported by myglc2 <myglc2@gmail.com>. * gnu/packages/lsh.scm (lsh)[inputs]: Add XAUTH. [arguments]: Modify 'XAUTH_PROGRAM' macro in 'server_x11.c'.
* gnu: lsh: Use 'modify-phases'.Ludovic Courtès2016-02-24
| | | | | * gnu/packages/lsh.scm (lsh)[arguments]: Use 'modify-phases' instead of 'alist-cons-before'.
* gnu: services: Install policies for polkit service.Andy Wingo2016-02-24
| | | | | | * gnu/services/desktop.scm (polkit-etc-files): Add the polkit package itself to the list of packages to scan for .policy files. This add support for pkexec.
* mplayer: Use 'modify-phases'.Efraim Flashner2016-02-24
| | | | | | * gnu/packages/video.scm (mplayer)[arguments]: Use 'modify-phases'. [source]: Use https. [home-page]: Use https.
* gnu: mplayer: Add codecs.Efraim Flashner2016-02-24
| | | | | * gnu/packages/video.scm (mplayer)[inputs]: Add libass, libmpeg2, libvdpau, libx264, opus.
* gnu: dropbear: Update to 2015.71.Efraim Flashner2016-02-24
| | | | * gnu/packages/ssh.scm (dropbear): Update to 2015.71.
* gnu: guile-next: Set correct native search paths.David Thompson2016-02-23
| | | | | * gnu/packages/guile.scm (guile-next): Use the "2.2" directory for the load paths.
* services: herd: Add missing newlines in error messages.Ludovic Courtès2016-02-23
| | | | | * gnu/services/herd.scm (report-action-error): Add missing newlines in messages.
* gnu: Add xfce4-xkb-plugin.Andreas Enge2016-02-23
| | | | | * gnu/packages/xfce.scm (xfce4-xkb-plugin): New variable. (xfce)[propagated-inputs]: Add it.
* gnu: telepathy-logger: Disable parallel tests.Leo Famulari2016-02-23
| | | | | * gnu/packages/freedesktop.scm (telepathy-logger)[arguments]: Disable parallel tests.
* gnu: Add rdmd.Roel Janssen2016-02-23
| | | | | | * gnu/packages/ldc.scm (rdmd): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: modem-manager: Use HTTPS URL.Leo Famulari2016-02-23
| | | | * gnu/packages/freedesktop.scm (modem-manager)[source]: Use HTTPS URL.
* gnu: mpd: Update to 0.19.12.Leo Famulari2016-02-22
| | | | * gnu/packages/mpd.scm (mpd): Update t0 0.19.12.
* gnu: ncmpcpp: Udate to 0.7.3.Leo Famulari2016-02-22
| | | | | * gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.3. [inputs]: Add icu4c.
* gnu: ncmpcpp: Use 'modify-phases'.Leo Famulari2016-02-22
| | | | * gnu/packages/mpd.scm (ncmpcpp)[arguments]: Use 'modify-phases'.
* vm: Only pass "-enable-kvm" to qemu if /dev/kvm is present.Christopher Allan Webber2016-02-22
| | | | | | | | Fixes <http://bugs.gnu.org/22633>. * gnu/build/vm.scm (load-in-linux-vm): Only pass "-enable-kvm" flag to qemu if "/dev/kvm" is present. * gnu/system/vm.scm (common-kvm-options): Same as above.
* gnu: pkg-config: Add non-HTTPS alternate URL.Ludovic Courtès2016-02-22
| | | | * gnu/packages/pkg-config.scm (%pkg-config)[source]: Add non-HTTPS URL.
* gnu: Remove python2-pyqt-4.Andreas Enge2016-02-22
| | | | | * gnu/packages/qt.scm (python2-pyqt-4): Delete variable. It depends on Qt 4, which does not receive security updates any more.
* gnu: Remove KDE 4.Andreas Enge2016-02-22
| | | | | | | | | | | * gnu/packages/kde.scm (qjson): Move from here... * gnu/packages/qt.scm (qjson): ...to here. * gnu/packages/pumpio.scm: Drop inclusion of (gnu packages kde). * gnu/packages/kde.scm: Delete file. * gnu-system.am (GNU_SYSTEM_MODULES): Unregister it. * gnu/packages/rdf.scm (soprano): Delete variable. KDE 4 relies on Qt 4, which does not receive security updates any more.
* gnu: python-patsy: Define 'python2-variant'.Efraim Flashner2016-02-22
| | | | | * gnu/packages/statistics.scm (python-patsy)[properties]: New field. (python2-patsy): Use 'strip-python2-variant'.
* gnu: python-patsy: Update to 0.4.1.Efraim Flashner2016-02-22
| | | | * gnu/packages/statistics.scm (python-patsy, python2-patsy): Update to 0.4.1.
* gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197.Mark H Weaver2016-02-22
| | | | | | | | | * gnu/packages/patches/qemu-CVE-2015-8619.patch, gnu/packages/patches/qemu-CVE-2016-1981.patch, gnu/packages/patches/qemu-CVE-2016-2197.patch, gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu: Add gnome-screenshot.Rene Saavedra2016-02-22
| | | | * gnu/packages/gnome.scm (gnome-screenshot): New variable.
* gnu: libotf: Use mirror:// URL.Roel Janssen2016-02-22
| | | | * gnu/packages/fontutils.scm (libotf): Use mirror://savannah URL.
* gnu: c-ares: Update to 1.11.0.Efraim Flashner2016-02-22
| | | | * gnu/packages/adns.scm (c-ares): Update to 1.11.0.
* gnu: parallel: Update to 20160122.Leo Famulari2016-02-22
| | | | * gnu/packages/parallel.scm (parallel): Update to 20160122.
* gnu: python-acme: Generate and install documentation.Leo Famulari2016-02-22
| | | | | | * gnu/packages/tls.scm (acme)[arguments]: Add 'docs' phase. [native-inputs]: Add python-sphinx, python-sphinxcontrib-programoutput, python-sphinx-rtd-theme, python-setuptools, texinfo.
* gnu: letsencrypt: Generate and install documentation.Leo Famulari2016-02-22
| | | | | | | * gnu/packages/tls.scm (letsencrypt)[arguments]: Add 'docs' phase. [native-inputs]: Add python2-sphinx, python2-sphinx-rtd-theme, python2-sphinx-repoze-autointerface, python2-sphinxcontrib-programoutput, texinfo.
* gnu: Add python-sphinx-repoze-autointerface.Leo Famulari2016-02-22
| | | | | * gnu/packages/python.scm (python-sphinx-repoze-autointerface, python2-sphinx-repoze-autointerface): New variables.
* gnu: Add python-sphinxcontrib-programoutput.Leo Famulari2016-02-22
| | | | | * gnu/packages/python.scm (python-sphinxcontrib-programoutput, python2-sphinxcontrib-programoutput): New variables.
* gnu: python-apipkg: Remove unzip dependency.Christopher Allan Webber2016-02-21
| | | | | | Unzip was never used for this package. * gnu/packages/python.scm (python-apipkg): Remove unzip dependency.
* gnu: Add python-editor.Christopher Allan Webber2016-02-21
| | | | * gnu/packages/python.scm (python-editor, python2-editor): New variables.
* gnu: Add python-translitcodec.Christopher Allan Webber2016-02-21
| | | | | * gnu/packages/python.scm (python-translitcodec, python2-translitcodec): New variables.
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