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* gnu: Add python-biom-format.•••* gnu/packages/bioinformatics.scm (python-biom-format, python2-biom-format): New variables. Ben Woodcroft2016-08-06
* gnu: Add python-future.•••* gnu/packages/python.scm (python-future, python2-future): New variables. Ben Woodcroft2016-08-06
* gnu: icedtea-8: Update to 3.1.0.•••Fixes CVE-2016-{3458,3485,3500,3508,3550,3587,3606,3598,3610}. * gnu/packages/java.scm (icedtea-8): Update to 3.1.0. [native-inputs]: Add SHENANDOAH-DROP. Leo Famulari2016-08-05
* gnu: icedtea-7: Update to 2.6.7.•••Fixes CVE-2016-{3458,3485,3500,3508,3550,3598,3606,3610}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.7. Leo Famulari2016-08-05
* services: Add spice vdagent service.•••* gnu/services/spice.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (Various Services): New subheading. David Craven2016-08-05
* gnu: spice-vdagent: Set Exec path in spice-vdagent.desktop.•••* gnu/packages/spice.scm (spice-vdagent): Set Exec path in spice-vdagent.desktop. David Craven2016-08-05
* gnu: qemu: Enable spice support.•••* gnu/packages/qemu.scm (qemu)[inputs]: Add SPICE and VIRGLRENDERER. (qemu-minimal)[inputs]: Remove SPICE and VIRGLRENDERER. David Craven2016-08-05
* gnu: qemu: Reorder inputs alphabetically.•••* gnu/packages/qemu.scm (qemu): Reorder inputs alphabetically. David Craven2016-08-05
* gnu: tor: Update to 0.2.8.6.•••* gnu/packages/tor.scm (tor): Update to 0.2.8.6. Signed-off-by: Andreas Enge <andreas@enge.fr> ng02016-08-05
* gnu: qjson: Remove package.•••* gnu/packages/qt.scm (qjson): Delete variable. Andreas Enge2016-08-05
* gnu: Add ircii.•••* gnu/packages/irc.scm (ircii): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> ng02016-08-05
* gnu: Add guile-commonmark•••* gnu/packages/guile.scm (guile-commonmark): New variable. Erik Edrosa2016-08-05
* gnu: tuxguitar: Update to 1.3.2.•••* gnu/packages/music.scm (tuxguitar): Update to 1.3.2. [arguments]: Use ant-build-system and rearrange build phases. [native-inputs]: Remove field. Ricardo Wurmus2016-08-04
* ui: Remove dependency on (gnu system file-systems).•••* guix/ui.scm (specification->file-system-mapping): Move to... * gnu/system/file-systems.scm (specification->file-system-mapping): ... here. Ludovic Courtès2016-08-04
* gnu: gcc: Reintroduce dependency on Texinfo.•••This partly reverts 868c13c53a9788f8f27e77d8c8f99df14be512ba, which introduced a regression whereby gcc@5 and gcc@6 would no longer contain their Info manual. * gnu/packages/gcc.scm (gcc-5)[native-inputs]: Remove. Ludovic Courtès2016-08-04
* gnu: curl: Replace with 7.50.1 [fixes CVE-2016-{3739,4802,5419,5420,5421].•••* gnu/packages/curl.scm (curl)[replacement]: New field. (curl-7.50.1): New variable. Leo Famulari2016-08-04
* gnu: zsh: Move to shells.scm.•••* gnu/packages/zsh.scm (zsh): Move from here ... * gnu/packages/shells.scm (zsh): ... to here. * gnu/packages/zsh.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove zsh.scm. Tobias Geerinckx-Rice2016-08-04
* Merge branch 'core-updates'Mark H Weaver2016-08-04
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| * install: Add nvi to the image.•••* gnu/system/install.scm (installation-os)[packages]: Add NVI. * doc/guix.texi (Proceeding with the Installation): Mention it. Ludovic Courtès2016-08-01
| * gnu: texlive-texmf: Mark as non-substitutable.•••* gnu/packages/tex.scm (texlive-texmf)[arguments]: Add #:substitutable?. Ludovic Courtès2016-08-01
| * gnu: unison: Add input ghostscript.•••* gnu/packages/ocaml.scm (unison)[native-inputs]: Add ghostscript. This is a follow-up to commit e83a13faa221fe65eb86dee224a3f2aab9e13c60. Andreas Enge2016-08-01
| * Merge branch 'master' into core-updatesMark H Weaver2016-07-31
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| * | gnu: ecl: Use "kernel-headers" instead of "linux-headers" to designate input.•••* gnu/packages/lisp.scm (ecl)[arguments]: Use "kernel-headers" as the identifier for an input. This is a follow-up to commit 55de892b435657f82a25c6499174d09b4a680f15. Signed-off-by: Andreas Enge <andreas@enge.fr> Andy Patterson2016-07-31
| * | gnu: rapicorn: Add patch to handle isnan.•••* gnu/packages/patches/rapicorn-isnan.patch: New file. * gnu/packages/graphics.scm (rapicorn)[source]: Add patch. * gnu/local.mk (dist_patch_DATA): Register patch. Andreas Enge2016-07-31
| * | gnu: fastcap: Add input ghostscript.•••* gnu/packages/engineering.scm (fastcap)[native-inputs]: Add ghostscript. This is a follow-up to commit e83a13faa221fe65eb86dee224a3f2aab9e13c60. Andreas Enge2016-07-31
| * | gnu: zsh: Update to 5.2.•••* gnu/packages/zsh.scm (zsh): Update to 5.2. Andreas Enge2016-07-31
| * | gnu: tcc: Use "kernel-headers" instead of "linux-headers" to designate input.•••* gnu/packages/c.scm (tcc)[arguments]: Use "kernel-headers" as identifier for an input. This is a follow-up to commit 55de892b435657f82a25c6499174d09b4a680f15. Andreas Enge2016-07-31
| * | gnu: dealii: Unregister deleted patch.•••* gnu/local.mk (dist_patch_DATA): Drop deleted patch. This is a follow-up to commit 101e847294dc403d5a7ef222117ad9070223b86b. Andreas Enge2016-07-31
| * | gnu: dealii: Update to 8.4.1.•••* gnu/packages/maths.scm (dealii): Update to 8.4.1. * gnu/packages/patches/dealii-p4est-interface.patch: Remove file. Andreas Enge2016-07-31
| * | gnu: wine: Update to 1.9.15.•••* gnu/packages/wine.scm (wine): Update to 1.9.15. Andreas Enge2016-07-31
| * | gnu: python-alembic: Update to 0.8.7.•••* gnu/packages/python.scm (python-alembic): Update to 0.8.7. Andreas Enge2016-07-31
| * | gnu: perl-xml-libxml: Update to 2.0128.•••* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0128. Andreas Enge2016-07-31
| * | gnu: glibc-locales: Fix build.•••* gnu/packages/patches/glibc-locales.patch: Adjust to glibc-2.23. * gnu/packages/base.scm (glibc-locales)[arguments]: Pass 'lib_cv_complocaledir'. 宋文武2016-07-31
| * | gnu: Add glibc 2.22.•••* gnu/packages/base.scm (glibc-2.22): New variable. (glibc-2.21): Inherit from it; remove 'arguments' field. Ludovic Courtès2016-07-30
| * | tests: base: Correct invalid merge.•••Fixes a regression introduced by merge commit 7575655212ecfbcd1f04e429c8a7a41f8720d027. * gnu/tests/base.scm (run-basic-test)[test]: Fix list of 'use-modules' and 'test-begin' call. Ludovic Courtès2016-07-30
| * | Merge branch 'master' into core-updatesMark H Weaver2016-07-29
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| * \ \ Merge branch 'master' into core-updatesMark H Weaver2016-07-29
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| * \ \ \ Merge branch 'master' into core-updatesLeo Famulari2016-07-28
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| * \ \ \ \ Merge branch 'master' into core-updatesMark H Weaver2016-07-28
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| * | | | | | gnu: dico: Patch 'idxgcide' bug.•••* gnu/packages/patches/dico-idxgcide-bug.patch: New file. * gnu/packages/dico.scm (dico)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès2016-07-28
| * | | | | | gnu: vlc: Drop -ffast-math from the compilation flags.•••* gnu/packages/video.scm (vlc)[arguments]: Add "ac_cv_c_fast_math=no" to #:configure-flags. Ludovic Courtès2016-07-28
| * | | | | | gnu: r-bsgenome: Update to 1.40.1.•••* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1. Ben Woodcroft2016-07-28
| * | | | | | gnu: r-iranges: Update to 2.6.1.•••* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1. Ben Woodcroft2016-07-28
| * | | | | | gnu: r-limma: Update to 3.28.17.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17. Ben Woodcroft2016-07-28
| * | | | | | gnu: r-xvector: Update to 0.12.1.•••* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1. Ben Woodcroft2016-07-28
| * | | | | | gnu: r-genomicranges: Update to 1.24.2.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2. Ben Woodcroft2016-07-28
| * | | | | | gnu: r-annotationdbi: Update to 1.34.4.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4. Ben Woodcroft2016-07-28
| * | | | | | gnu: r-biocparallel: Update to 1.6.3.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3. Ben Woodcroft2016-07-28
| * | | | | | gnu: r-biostrings: Update to 2.40.2.•••* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2. Ben Woodcroft2016-07-28
| * | | | | | gnu: r-summarizedexperiment: Update to 1.2.3.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3. Ben Woodcroft2016-07-28