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* gnu: Add r-systempiper.•••* gnu/packages/bioinformatics.scm (r-systempiper): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-shortread.•••* gnu/packages/bioinformatics.scm (r-shortread): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-gostats.•••* gnu/packages/bioinformatics.scm (r-gostats): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-category.•••* gnu/packages/bioinformatics.scm (r-category): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-gseabase.•••* gnu/packages/bioinformatics.scm (r-gseabase): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-rbgl.•••* gnu/packages/bioinformatics.scm (r-rbgl): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-annotationforge.•••* gnu/packages/bioinformatics.scm (r-annotationforge): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-batchjobs.•••* gnu/packages/statistics.scm (r-batchjobs): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-fail.•••* gnu/packages/statistics.scm (r-fail): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-bbmisc.•••* gnu/packages/statistics.scm (r-bbmisc): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-checkmate.•••* gnu/packages/statistics.scm (r-checkmate): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-backports.•••* gnu/packages/statistics.scm (r-backports): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-sendmailr.•••* gnu/packages/statistics.scm (r-sendmailr): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-pheatmap.•••* gnu/packages/statistics.scm (r-pheatmap): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-matrix.•••* gnu/packages/statistics.scm (r-matrix): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-deseq2.•••* gnu/packages/bioinformatics.scm (r-deseq2): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-genefilter.•••* gnu/packages/bioinformatics.scm (r-genefilter): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-hmisc.•••* gnu/packages/statistics.scm (r-hmisc): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-geneplotter.•••* gnu/packages/bioinformatics.scm (r-geneplotter): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-annotate.•••* gnu/packages/bioinformatics.scm (r-annotate): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-rpart.•••* gnu/packages/statistics.scm (r-rpart): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-rjson.•••* gnu/packages/web.scm (r-rjson): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-hwriter.•••* gnu/packages/web.scm (r-hwriter): New variable. Ricardo Wurmus2016-09-26
* gnu: tcc: Disable build on MIPS.•••* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on mips64el. Ricardo Wurmus2016-09-26
* gnu: Add optipng.•••* gnu/packages/image.scm (optipng): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org> Arun Isaac2016-09-25
* system: Don't emit a GRUB 'search' command when passed a GRUB file name.•••Reported by Tomáš Čech <tcech@suse.com> at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20067#26>. * gnu/system/grub.scm (grub-root-search): Don't emit anything when FILE is a string that does not denote an absolute file name. Ludovic Courtès2016-09-26
* gnu: epiphany: Drop NSS and libwnck.•••These dependencies were dropped in Epiphany 3.21.x. * gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck". Ricardo Wurmus2016-09-25
* gnu: epiphany: Update to 3.22.0.•••* gnu/packages/gnome.scm (epiphany): Update to 3.22.0. Ricardo Wurmus2016-09-25
* gnu: python-virtualenv: Update to 15.0.3.•••* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3. [arguments]: Disable failing test. Ricardo Wurmus2016-09-25
* gnu: linux-libre: Update to 4.7.5.•••* gnu/packages/linux.scm (linux-libre): Update to 4.7.5. Mark H Weaver2016-09-25
* gnu: linux-libre@4.4: Update to 4.4.22.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22. Mark H Weaver2016-09-25
* gnu: Add pam-krb5•••* gnu/packages/admin.scm (pam-krb5): New variable. John Darrington2016-09-25
* gnu: privoxy: Update to 3.0.26.•••* gnu/packages/tor.scm (privoxy): Update to 3.0.26. [home-page]: Use https. Efraim Flashner2016-09-24
* gnu: tor: Update to 0.2.8.8.•••* gnu/packages/tor.scm (tor): Update to 0.2.8.8. [source]: Update source url. [home-page]: Use https. Efraim Flashner2016-09-24
* system: grub.cfg uses correct file names when store is not in root partition.•••Fixes <http://bugs.gnu.org/24346>. Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama). * guix/scripts/system.scm (previous-grub-entries): Get the initrd file name from PARAMS. * gnu/system.scm (operating-system-grub.cfg): Use 'operating-system-initrd-file' to retrieve the initrd file name. * gnu/system/grub.scm (strip-mount-point): New procedure. (grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for LINUX and INITRD. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Carlos Sánchez de La Lama2016-09-24
* system: 'read-boot-parameters' reads the 'initrd' parameter.•••* gnu/system.scm (<boot-parameters>)[initrd]: New field. (read-boot-parameters): Read the 'initrd' element and fill in the 'initrd' field of the result. Ludovic Courtès2016-09-24
* gnu: Add gforth.•••* gnu/packages/gforth.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: 宋文武 <iyzsong@gmail.com> ng02016-09-24
* gnu: Add gnome-calculator.•••* gnu/packages/gnome.scm (gnome-calculator): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org> Rene Saavedra2016-09-24
* gnu: Add cmark.•••* gnu/packages/markdown.scm (cmark): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Erik Edrosa2016-09-23
* gnu: Add enet.•••* gnu/packages/networking.scm (enet): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> ng02016-09-23
* gnu: flashrom: Update to 0.9.9•••* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9. [source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch". [aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags. * gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-09-23
* gnu: Add nickle.•••* gnu/packages/nickle.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> ng02016-09-23
* gnu: orpheus: Use 'modify-phases'.•••* gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases' syntax. Efraim Flashner2016-09-23
* gnu: orpheus: Fix build on mips64el.•••* gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass "--host=mips64el-unknown-linux-gnu" to ./configure. Efraim Flashner2016-09-23
* gnu: giac-xcas: Update to 1.2.2-81.•••* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81. Signed-off-by: Leo Famulari <leo@famulari.name> Nicolas Goaziou2016-09-23
* gnu: r-curl: Respect CURL_CA_BUNDLE variable.•••* gnu/packages/web.scm (r-curl)[arguments]: Add phase "allow-CURL_CA_BUNDLE". Ricardo Wurmus2016-09-23
* gnu: sra-tools: Update to 2.7.0.•••* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0. Ricardo Wurmus2016-09-23
* gnu: ncbi-vdb: Update to 2.7.0.•••* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0. Ricardo Wurmus2016-09-23
* gnu: ngs-sdk: Update to 1.2.5.•••* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.5. Ricardo Wurmus2016-09-23
* gnu: randomjungle: Only build on x86_64 and i686.•••* gnu/packages/machine-learning.scm (randomjungle)[supported-systems]: Only build on x86_64 and i686. Ricardo Wurmus2016-09-23
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