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* gnu: gjs: Update to 1.48.3.Kei Kebreau2017-05-24
| | | | | | | * gnu/packages/gnome.scm (gjs): Update to 1.48.3. [source]: Remove snippet. [arguments]: Disable failing tests. [propagated-inputs]: Use mozjs-38 instead of mozjs-24; add cairo.
* gnu: gobject-introspection: Update to 1.52.1.Kei Kebreau2017-05-23
| | | | * gnu/packages/glib.scm (gobject-introspection): Update to 1.52.1.
* Merge branch 'master' into stagingMarius Bakke2017-05-22
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| * gnu: fraggenescan: Update to 1.30.Ben Woodcroft2017-05-22
| | | | | | | | | | | | * gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30. [arguments]: Update patching of paths, install procedure. Add new test case.
| * gnu: roary: Update to 3.8.2.Ben Woodcroft2017-05-22
| | | | | | | | * gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
| * gnu: taxtastic: Update to 0.6.4.Ben Woodcroft2017-05-22
| | | | | | | | | | * gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4. [source]: Use PyPI URI.
| * gnu: r-mutationalpatterns: Update to 1.2.1.Roel Janssen2017-05-22
| | | | | | | | * gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
| * gnu: v4l-utils: Update to 1.12.5.Marius Bakke2017-05-21
| | | | | | | | * gnu/packages/video.scm (v4l-utils): Update to 1.12.5.
| * gnu: x265: Update to 2.4.Marius Bakke2017-05-21
| | | | | | | | * gnu/packages/video.scm (x265): Update to 2.4.
| * gnu: vlc: Update to 2.2.5.1.Marius Bakke2017-05-21
| | | | | | | | | | * gnu/packages/video.scm (vlc): Update to 2.2.5.1. [source]: Remove obsolete snippet.
| * gnu: libaacs: Update to 0.9.0.Marius Bakke2017-05-21
| | | | | | | | * gnu/packages/video.scm (libaacs): Update to 0.9.0.
| * gnu: diamond: Update to 0.9.0.Ben Woodcroft2017-05-21
| | | | | | | | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0. [license]: Change to AGPL3+.
| * gnu: fasttree: Update to 2.1.10.Ben Woodcroft2017-05-21
| | | | | | | | * gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
| * gnu: python-biom-format: Update to 2.1.6.Ben Woodcroft2017-05-21
| | | | | | | | | | * gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6. [propagated-inputs]: Add python-pandas.
| * gnu: python-future: Update to 0.16.0.Ben Woodcroft2017-05-21
| | | | | | | | * gnu/packages/python.scm (python-future): Update to 0.16.0.
| * gnu: ccid: Update to 1.4.27.Marius Bakke2017-05-21
| | | | | | | | * gnu/packages/security-token.scm (ccid): Update to 1.4.27.
| * gnu: fio: Update to 2.20.Marius Bakke2017-05-21
| | | | | | | | | | * gnu/packages/benchmark.scm (fio): Update to 2.20. [arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
| * gnu: nano: Update to 2.8.4.Marius Bakke2017-05-21
| | | | | | | | * gnu/packages/nano.scm (nano): Update to 2.8.4.
| * gnu: vim: Update to 8.0.0600.Marius Bakke2017-05-21
| | | | | | | | * gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
| * gnu: vim-full: Disable failing test.Marius Bakke2017-05-21
| | | | | | | | * gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
| * gnu: linux-libre: Update to 4.11.2.Mark H Weaver2017-05-21
| | | | | | | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2. (%linux-libre-hash): Update hash.
| * gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations.Mark H Weaver2017-05-21
| | | | | | | | | | | | | | | | | | | | | | | | | | This removes support for the "shared memory communications over RDMA" (SMC-R) networking protocol, which was added in 4.11 without the knowledge of the RDMA maintainers, and which is thought to contain significant security flaws. For details, see <https://lwn.net/Articles/723081> and <https://lwn.net/Articles/723070>. * gnu/packages/aux-files/linux-libre/4.11-x86_64.conf, gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC. 723# 0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
| * gnu: linux-libre@4.9: Update to 4.9.29.Mark H Weaver2017-05-21
| | | | | | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
| * gnu: linux-libre@4.4: Update to 4.4.69.Mark H Weaver2017-05-21
| | | | | | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69.
| * gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.Ludovic Courtès2017-05-21
| | | | | | | | | | | | | | | | | | This avoids pulling in glibc & co. Fixes a regression introduced in 2f861edf5cf5118ad560737343312c9a5efe5b2f (the 'unionfsctl' executable did not exist in unionfs-fuse 0.26). * gnu/packages/linux.scm (unionfs-fuse/static)[arguments] <post-install>: Remove 'unionfsctl' binary.
| * gnu: ghostscript: Add TODO comment about bundled jbig2dec.Leo Famulari2017-05-20
| | | | | | | | * gnu/packages/ghostscript.scm (ghostscript): Add comment.
| * gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}.Leo Famulari2017-05-20
| | | | | | | | | | | | | | | | * gnu/packages/patches/jbig2dec-CVE-2017-7885.patch, gnu/packages/patches/jbig2dec-CVE-2017-7975.patch, gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (jbig2dec)[source]: Use them.
| * gnu: pcsc-lite: Update to 1.8.21.Marius Bakke2017-05-20
| | | | | | | | * gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21.
| * gnu: icedtea@3: Add aarch32-drop.Leo Famulari2017-05-20
| | | | | | | | * gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop.
| * gnu: icedtea@3: Update to 3.4.0 [security fixes].Leo Famulari2017-05-20
| | | | | | | | | | | | Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}. * gnu/packages/java.scm (icedtea-8): Update to 3.4.0.
| * gnu: imagemagick: Update to 6.9.8-6.Leo Famulari2017-05-20
| | | | | | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6.
| * gnu: guix: Add 'guile2.0-guix'.Ludovic Courtès2017-05-20
| | | | | | | | * gnu/packages/package-management.scm (guile2.0-guix): New variable.
| * gnu: libssh, guile-ssh: Add a "debug" output.Ludovic Courtès2017-05-20
| | | | | | | | | | * gnu/packages/ssh.scm (libssh)[outputs]: New field. (guile-ssh)[outputs]: New field.
| * gnu: icedtea@2: Update to 2.6.10 [security fixes].Leo Famulari2017-05-19
| | | | | | | | | | | | Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
| * gnu: Add loksh.ng02017-05-20
| | | | | | | | | | | | * gnu/packages/shells.scm (loksh): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].Leo Famulari2017-05-19
| | | | | | | | * gnu/packages/ssh.scm (dropbear): Update to 2017.75.
| * gnu: calibre: Don't create uninstaller.Brendan Tildesley2017-05-19
| | | | | | | | | | | | * gnu/packages/ebook.scm (calibre)[arguments]<#:phases>. Add 'patch-source' phase. Co-authored-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: calibre: Add exhaustive license list.Brendan Tildesley2017-05-19
| | | | | | | | | | | | | | * gnu/packages/ebook.scm (calibre): Add exhaustive license list. (chmlib)[license]: Use license: prefix. Co-authored-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: calibre: Add missing dependencies.Brendan Tildesley2017-05-19
| | | | | | | | | | | | | | | | * gnu/packages/ebook.scm (calibre)[inputs]: Add poppler, python2-dnspython, and python2-pygments. [arguments]: Remove old TODO comments. libwmf and psutil are no longer used. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: calibre: Unbundle chardet.Brendan Tildesley2017-05-19
| | | | | | | | | | | | | | * gnu/packages/ebook.scm (calibre)[source]: Delete bundled chardet. [inputs]: Add python2-chardet. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: calibre: Unbundle liberation fonts.Brendan Tildesley2017-05-19
| | | | | | | | | | | | | | | | | | *gnu/packages/ebook.scm (calibre)[source]: Delete liberation .ttf files. [native-inputs]: Add font-liberation. [arguments]: Calibre still references the bundled fonts, so we install the packaged fonts to the directory the bundled fonts would have been. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: calibre: Unbundle python2-markdown.Brendan Tildesley2017-05-19
| | | | | | | | | | | | | | | | * gnu/packages/ebook.scm (calibre)[snippet]: Replace python references to bundled markdown with packaged. Remove markdown from source. [inputs]: Add python2-markdown as a dependency. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: calibre: Import unbundle feedparser patch from debian.Brendan Tildesley2017-05-19
| | | | | | | | | | | | | | | | | | * gnu/packages/ebook.scm (calibre)[source]: Reference new patch file. [inputs]: Add python2-feedparser as an input. * gnu/packages/patches/calibre-use-packaged-feedparser.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: calibre: Import dont-load-icons patch from debian.Brendan Tildesley2017-05-19
| | | | | | | | | | | | | | | | * gnu/packages/patches/calibre-dont-load-remote-icons.patch: New file. * gnu/packages/ebooks.scm (calibre)[source]: Add reference to patch file. * gnu/local.mk (dist_path_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: calibre: Update to 2.85.1.Brendan Tildesley2017-05-19
| | | | | | | | | | | | | | | | * gnu/packages/ebooks.scm (calibre): Update to 2.85.1. * gnu/packages/patches/calibre-drop-unrar.patch: Delete incompatible patch file. Recreate debian patch file from the latest calibre git revision. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: python-pyqt@4: Update to 4.12.Marius Bakke2017-05-19
| | | | | | | | | | * gnu/packages/qt.scm (python-pyqt-4): Update to 4.12. [source]: Adjust URI to file rename.
| * gnu: python-pyqt: Update to 5.8.2.Marius Bakke2017-05-19
| | | | | | | | * gnu/packages/qt.scm (python-pyqt): Update to 5.8.2.
| * gnu: python-sip: Update to 4.19.2.Marius Bakke2017-05-19
| | | | | | | | * gnu/packages/qt.scm (python-sip): Update to 4.19.2.
| * gnu: guile-ssh: Fix potential double-free/use-after-free issue.Ludovic Courtès2017-05-19
| | | | | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/26976>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/patches/guile-ssh-double-free.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
| * gnu: btrfs-progs: Update to 4.11.Tobias Geerinckx-Rice2017-05-18
| | | | | | | | * gnu/packages/linux.scm (btrfs-progs): Update to 4.11.
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