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* gnu: Sync GNU descriptions with upstream.•••From 'guix lint -c gnu-description'. * gnu/packages/gnunet.scm (gnunet): Adjust description. * gnu/packages/marst.scm (marst): Likewise. * gnu/packages/maths.scm (c-graph): Likewise. * gnu/packages/networking.scm (macchanger): Likewise. Ludovic Courtès2016-07-29
* gnu: Add sshpass.•••* gnu/packages/ssh.scm (sshpass): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Nicolas Goaziou2016-07-29
* gnu: python-beautifulsoup4: Update to 4.5.0.•••* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4): Update to 4.5.0. Leo Famulari2016-07-28
* gnu: perl-devel-symdump: Update to 2.17.•••* gnu/packages/perl.scm (perl-devel-symdump): Update to 2.17. Signed-off-by: Leo Famulari <leo@famulari.name> ng02016-07-28
* gnu: Add virt-viewer.•••* gnu/packages/spice.scm (virt-viewer): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> David Craven2016-07-28
* gnu: Add spice-vdagent.•••* gnu/packages/spice.scm (spice-vdagent): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> David Craven2016-07-28
* gnu: Add spice.•••* gnu/packages/spice.scm (spice): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> David Craven2016-07-28
* gnu: Add spice-gtk.•••* gnu/packages/spice.scm (spice-gtk): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> David Craven2016-07-28
* gnu: Add spice-protocol.•••* gnu/packages/spice.scm (spice-protocol): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> David Craven2016-07-28
* gnu: Add virglrenderer.•••* gnu/packages/spice.scm (virglrenderer): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> David Craven2016-07-28
* gnu: Add usbredir.•••* gnu/packages/spice.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> David Craven2016-07-28
* Revert "gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]."•••This reverts commit ae46cd0e4cfb1f06d099b2cda1f9e702e86c90e9. Leo Famulari2016-07-28
* gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207].•••* gnu/packages/patches/gd-CVE-2016-5766.patch, gnu/packages/patches/gd-CVE-2016-6128.patch, gnu/packages/patches/gd-CVE-2016-6132.patch, gnu/packages/patches/gd-CVE-2016-6214.patch, gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files. * gnu/packages/patches/gd-fix-tests-on-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/gd.scm (gd): Update to 2.2.3. [source]: Update patches field accordingly. Mark H Weaver2016-07-28
* gnu: commencement: 'guile-final' is now "hidden".•••This way, we no longer have this annoying warning: $ guix build guile -n guix build: warning: ambiguous package specification `guile' guix build: warning: choosing guile-2.0.11 from gnu/packages/guile.scm:128:2 * gnu/packages/commencement.scm (guile-final): Use 'hidden-package'. * tests/packages.scm ("fold-packages, hidden package"): New test. Ludovic Courtès2016-07-28
* gnu: Add asciinema.•••* gnu/packages/terminals.scm (asciinema): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alex Griffin2016-07-28
* gnu: gnome: Propagate file-roller.•••* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add file-roller. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alex Griffin2016-07-28
* gnu: r-genomicfeatures: Update to 1.24.5.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5. Ben Woodcroft2016-07-28
* gnu: r-bsgenome: Update to 1.40.1.•••* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1. Ben Woodcroft2016-07-28
* gnu: r-iranges: Update to 2.6.1.•••* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1. Ben Woodcroft2016-07-28
* gnu: r-limma: Update to 3.28.17.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17. Ben Woodcroft2016-07-28
* gnu: r-xvector: Update to 0.12.1.•••* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1. Ben Woodcroft2016-07-28
* gnu: r-genomicranges: Update to 1.24.2.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2. Ben Woodcroft2016-07-28
* gnu: r-annotationdbi: Update to 1.34.4.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4. Ben Woodcroft2016-07-28
* gnu: r-biocparallel: Update to 1.6.3.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3. Ben Woodcroft2016-07-28
* gnu: r-biostrings: Update to 2.40.2.•••* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2. Ben Woodcroft2016-07-28
* gnu: r-summarizedexperiment: Update to 1.2.3.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3. Ben Woodcroft2016-07-28
* gnu: r-genomicalignments: Update to 1.8.4.•••* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4. Ben Woodcroft2016-07-28
* gnu: r-rtracklayer: Update to 1.32.2.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2. Ben Woodcroft2016-07-28
* gnu: r-genomeinfodb: Update to 1.8.3.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3. Ben Woodcroft2016-07-28
* gnu: r-s4vectors: Update to 0.10.2.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2. Ben Woodcroft2016-07-28
* gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}].•••* gnu/packages/patches/mysql-fix-failing-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/databases.scm (mysql): Update to 5.7.13. Leo Famulari2016-07-28
* gnu: the-silver-searcher: Update to 0.32.0.•••* gnu/packages/code.scm(the-silver-searcher): Update to 0.32.0. Tomáš Čech2016-07-28
* gnu: imagemagick: Update to 6.9.5-3.•••* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-3. Leo Famulari2016-07-27
* gnu: mariadb: Update to 10.1.16.•••* gnu/packages/databases.scm (mariadb): Update to 10.1.16. Leo Famulari2016-07-27
* gnu: calibre: Update to 2.63.0.•••* gnu/packages/ebook.scm (calibre): Update to 2.63.0. [inputs]: Remove unnecessary imagemagick dependency. [phases]: Use modify-phases. * gnu/packages/patches/calibre-drop-unrar.patch: Update for new version. Signed-off-by: Roel Janssen <roel@gnu.org> Alex Griffin2016-07-27
* gnu: krona-tools: Update to 2.7.•••* gnu/packages/web.scm (krona-tools): Update to 2.7. [arguments]: Delete 'build' phase. Install new scripts. Ben Woodcroft2016-07-27
* gnu: diamond: Update to 0.8.16.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16. Ben Woodcroft2016-07-27
* gnu: guix: Update revision number in version.•••This is a follow-up to commit 95af24a2f1fb58eb9e6ee902c9330534f0aca9f3. Reported by Alex Kost <alezost@gmail.com>. Andreas Enge2016-07-27
* gnu: magit: Fix rebase commands that require perl.•••* gnu/packages/emacs.scm (magit)[inputs]: Add 'perl'. [arguments]: Adjust 'patch-exec-paths' phase to make some rebase commands find 'perl'. Signed-off-by: Alex Kost <alezost@gmail.com> Alex Griffin2016-07-27
* gnu: Add httping.•••* gnu/packages/networking.scm (httping): New variable. Tobias Geerinckx-Rice2016-07-27
* gnu: Add missing copyright symbol.•••* gnu/packages/networking.scm: Add missing "©" to header comments. Tobias Geerinckx-Rice2016-07-27
* gnu: gmime: Remove 'gpg' to 'gpg2' substitution.•••* gnu/packages/mail.scm (gmime)[arguments]: Remove the substitution which previously changed 'gpg' to 'gpg2' in 'patch-paths-in-tests' phase. Signed-off-by: Leo Famulari <leo@famulari.name> ng02016-07-26
* gnu: dmd: Remove package, superseded by shepherd.•••* gnu/packages/admin.scm (dmd): Remove variable. Andreas Enge2016-07-26
* gnu: Add perl-db-file.•••* gnu/packages/databases.scm (perl-db_file): New variable. Signed-off-by: Andreas Enge <andreas@enge.fr> Danny Milosavljevic2016-07-26
* gnu: icecat: Install icons.•••* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add 'install-icons' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alex Griffin2016-07-26
* gnu: Add haveged.•••* gnu/packages/linux.scm (haveged): New variable. Tobias Geerinckx-Rice2016-07-26
* gnu: Add perceptualdiff.•••* gnu/packages/image.scm (perceptualdiff): New variable. Tobias Geerinckx-Rice2016-07-26
* gnu: linux-libre@4.1: Update to 4.1.28.•••* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.28. Mark H Weaver2016-07-26
* gnu: linux-libre: Update to 4.7.•••* gnu/packages/linux.scm (linux-libre): Update to 4.7. * gnu/packages/linux-libre-4.7-x86_64.conf, gnu/packages/linux-libre-4.7-i686.conf: New files. * gnu/packages/linux-libre-4.6-x86_64.conf, gnu/packages/linux-libre-4.6-i686.conf: Delete files. * Makefile.am (KCONFIGS): Update accordingly. Mark H Weaver2016-07-26
* gnu: calibre: Build with non-modular Qt.•••* gnu/packages/ebook.scm (calibre)[native-inputs]: Replace QTBASE by QT. [inputs]: Replace QTBASE by QT and PYTHON2-PYQT by PYTHON2-PYQT-5.5. This essentially reverts commit 76806c54ed72f8f04079bbb187b186b833c103e1. Reported by Roel Janssen <roel@gnu.org>. Andreas Enge2016-07-26
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