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* gnu: mutt: Don't retain reference to GCC.Ludovic Courtès2015-07-03
| | | | | | * gnu/packages/patches/mutt-store-references.patch: New file. * gnu/packages/mail.scm (mutt)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Add deal.II.Eric Bavier2015-06-29
| | | | | | * gnu/packages/maths.scm (dealii, dealii-openmpi): New variables. * gnu/packages/patches/dealii-p4est-interface.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: petsc: Upgrade to 3.6.0.Eric Bavier2015-06-29
| | | | | | * gnu/packages/maths.scm (petsc): Upgrade to 3.6.0. * gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch. * gnu-system.am (dist_patch_DATA): Remove it.
* gnu: Add MUMPS.Eric Bavier2015-06-29
| | | | | | | * gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi) (mumps-metis-openmpi): New variables. * gnu/packages/patches/mumps-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Update scotch to 6.0.4.Eric Bavier2015-06-29
| | | | | | | | | * gnu/packages/maths.scm (scotch): Update to 6.0.4. [arguments]: Add -fPIC to CFLAGS. * gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a new set of test fixes. * gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: hwloc: Upgrade to 1.10.1.Eric Bavier2015-06-29
| | | | | | | | | * gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch. * gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1. [source]: Use patch. [propagated-inputs]: Remove libpci. [inputs]: Add libpciaccess. * gnu-system.am (dist_patch_DATA): Add patch.
* gnu: r: Update to 3.2.1.Ricardo Wurmus2015-06-29
| | | | | | * gnu/packages/statistics.scm (r): Update to 3.2.1. * gnu/packages/patches/r-fix-15899.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it.
* gnu: Add pv.Claes Wallin2015-06-27
| | | | | | | * gnu/package/pv.scm (pv): New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Alex Kost <alezost@gmail.com>
* Merge branch 'master' into core-updatesMark H Weaver2015-06-21
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| * gnu: clang: Allow 'clang' to link executables.Ludovic Courtès2015-06-19
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/clang-libc-search-path.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/llvm.scm (clang-from-llvm)[source]: Use it. [inputs]: Add "gcc-lib". [arguments]. Add -DGCC_INSTALL_PREFIX and -DC_INCLUDE_DIRS to #:configure-flags. Add #:phases argument.
* | gnu: gsl: Fix poly test on i686.Mark H Weaver2015-06-20
| | | | | | | | | | | | | | * gnu/packages/patches/gsl-poly-test-fix-pt1.patch, gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/maths.scm (gsl)[source]: Add patches.
* | gnu: mdadm: Add compilation fix for gcc-4.9.Mark H Weaver2015-06-19
| | | | | | | | | | | | * gnu/packages/patches/mdadm-gcc-4.9-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/linux.scm (mdadm): Add patch.
* | gnu: cpio: Fix symlink-bad-length test.Mark H Weaver2015-06-17
| | | | | | | | | | | | * gnu/packages/patches/cpio-fix-symlink-bad-length-test.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/cpio.scm (cpio): Add patch.
* | gnu: libtiff: Add fixes for several CVEs.Mark H Weaver2015-06-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/libtiff-CVE-2012-4564.patch, gnu/packages/patches/libtiff-CVE-2013-1960.patch, gnu/packages/patches/libtiff-CVE-2013-1961.patch, gnu/packages/patches/libtiff-CVE-2013-4231.patch, gnu/packages/patches/libtiff-CVE-2013-4232.patch, gnu/packages/patches/libtiff-CVE-2013-4243.patch, gnu/packages/patches/libtiff-CVE-2013-4244.patch, gnu/packages/patches/libtiff-CVE-2014-8127-pt1.patch, gnu/packages/patches/libtiff-CVE-2014-8127-pt2.patch, gnu/packages/patches/libtiff-CVE-2014-8127-pt3.patch, gnu/packages/patches/libtiff-CVE-2014-8127-pt4.patch, gnu/packages/patches/libtiff-CVE-2014-8128-pt1.patch, gnu/packages/patches/libtiff-CVE-2014-8128-pt2.patch, gnu/packages/patches/libtiff-CVE-2014-8128-pt3.patch, gnu/packages/patches/libtiff-CVE-2014-8128-pt4.patch, gnu/packages/patches/libtiff-CVE-2014-8128-pt5.patch, gnu/packages/patches/libtiff-CVE-2014-8129.patch, gnu/packages/patches/libtiff-CVE-2014-9330.patch, gnu/packages/patches/libtiff-CVE-2014-9655.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff)[source]: Add patches.
* | Merge branch 'master' into core-updatesMark H Weaver2015-06-16
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| * gnu: qemu: Add fixes for CVE-2015-{4037,4103,4104,4105,4106}.Mark H Weaver2015-06-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/qemu-CVE-2015-4037.patch, gnu/packages/patches/qemu-CVE-2015-4103.patch, gnu/packages/patches/qemu-CVE-2015-4104.patch, gnu/packages/patches/qemu-CVE-2015-4105.patch, gnu/packages/patches/qemu-CVE-2015-4106-pt1.patch, gnu/packages/patches/qemu-CVE-2015-4106-pt2.patch, gnu/packages/patches/qemu-CVE-2015-4106-pt3.patch, gnu/packages/patches/qemu-CVE-2015-4106-pt4.patch, gnu/packages/patches/qemu-CVE-2015-4106-pt5.patch, gnu/packages/patches/qemu-CVE-2015-4106-pt6.patch, gnu/packages/patches/qemu-CVE-2015-4106-pt7.patch, gnu/packages/patches/qemu-CVE-2015-4106-pt8.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/qemu.scm (qemu-headless)[source]: Add patches.
| * gnu: Rename (gnu packages dwm) to (gnu packages suckless).amz32015-06-15
| | | | | | | | | | | | * gnu/packages/dwm.scm: Rename this ... * gnu/packages/suckless.scm: ... to this. * gnu-system.am (GNU_SYSTEM_MODULES): Change dwm.scm to suckless.scm.
* | gnu: tar: Skip tests that rely on undefined unlinkat(2) behavior.Ludovic Courtès2015-06-16
| | | | | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/20597>. Reported by Andrew Patterson <ajpatter@uwaterloo.ca>. * gnu/packages/patches/tar-skip-unreliable-tests.patch: New file. * gnu/packages/base.scm (tar)[source](patches): Add it. * gnu-system.am (dist_patch_DATA): Add it.
* | gnu: gettext: Fix non-deterministic msgunfmt behavior.Ludovic Courtès2015-06-15
| | | | | | | | | | | | | | | | Suggested by Alírio Eyng <alirioeyng@gmail.com>. * gnu/packages/patches/gettext-msgunfmt.patch: New file. * gnu/packages/gettext.scm (gnu-gettext)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it.
* | Merge branch 'master' into core-updatesMark H Weaver2015-06-14
|\| | | | | | | | | | | Conflicts: gnu/packages/commencement.scm gnu/packages/xml.scm
| * gnu: perl-net-ssleay: Disable test that fails with openssl-1.0.2b.Mark H Weaver2015-06-13
| | | | | | | | | | | | * gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/openssl.scm (perl-net-ssleay): Add patch.
| * gnu: python: Disable ssl test that fails with openssl-1.0.2b.Mark H Weaver2015-06-13
| | | | | | | | | | | | * gnu/packages/patches/python-disable-ssl-test.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/python.scm (python): Add patch.
| * gnu: Add hydra.Eric Bavier2015-06-13
| | | | | | | | | | | | | | | | * gnu/packages/ci.scm: New file. * gnu/packages/patches/hydra-automake-1.15.patch, gnu/packages/patches/hydra-disable-darcs-test.patch: New files. * gnu-system.am (GNU_SYSTEM_MODULES): Add file. (dist_patch_DATA): Add patches.
| * gnu: Add libsvm.Ricardo Wurmus2015-06-12
| | | | | | | | | | * gnu/packages/machine-learning.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* | gnu: patch: Set PATH_MAX for Hurd systems.Manolis Ragkousis2015-06-12
| | | | | | | | | | * gnu/packages/patches/patch-hurd-path-max.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* | Merge branch 'master' into core-updatesMark H Weaver2015-06-10
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| * gnu: qemu: Add fix for CVE-2015-3209.Mark H Weaver2015-06-10
| | | | | | | | | | | | * gnu/packages/patches/qemu-CVE-2015-3209.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/qemu.scm (qemu): Add patch.
| * gnu: icecat: Update to 31.7.0-gnu1.Mark H Weaver2015-06-06
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/icecat-CVE-2015-0797.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch, gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch, gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2716.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/gnuzilla.scm (icecat): Update to 31.7.0-gnu1. Remove patches.
| * gnu: webkitgtk-2.4: Update to 2.8.9, build with gtk3.宋文武2015-05-29
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.8.9, build with gtk3. Move flex and which to 'native-inputs'. Remove #:configure-flags. (webkitgtk/gtk+-2): New variable. * gnu/packages/gnucash.scm (gnucash): Use webkitgtk/gtk+-2. * gnu/packages/patches/webkitgtk-2.4.8-gmutexlocker.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. Co-authored-by: Feng Shu <tumashu@163.com>
| * gnu: maxima: Update to 5.36.1.Mark H Weaver2015-05-26
| | | | | | | | | | | | * gnu/packages/patches/maxima-defsystem-mkdir.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/maths.scm (maxima): Update to 5.36.1. Add patch.
| * gnu: gnutls: Update to 3.4.1.Mark H Weaver2015-05-22
| | | | | | | | | | | | * gnu/packages/patches/gnutls-fix-duplicate-manpages.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/gnutls.scm (gnutls): Update to 3.4.1. Remove patch.
| * gnu: fuse: Add fix for CVE-2015-3202.Mark H Weaver2015-05-22
| | | | | | | | | | | | * gnu/packages/patches/fuse-CVE-2015-3202.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/linux.scm (fuse): Add patch.
| * gnu: r: Apply patch to fix linking against R.Ricardo Wurmus2015-05-21
| | | | | | | | | | | | * gnu/packages/patches/r-fix-15899.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/statistics.scm (r)[source]: Use it.
| * gnu: bitlbee: Update to 3.4.Mark H Weaver2015-05-20
| | | | | | | | | | | | | | * gnu/packages/patches/bitlbee-configure-doc-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/messaging.scm (bitlbee): Update to 3.4. Add patch. [inputs]: Remove 'zlib'.
| * gnu: qemu: Update to 2.3.0; add fix for CVE-2015-3456.Mark H Weaver2015-05-14
| | | | | | | | | | | | * gnu/packages/patches/qemu-CVE-2015-3456.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/qemu.scm (qemu-headless): Update to 2.3.0. Add patch.
| * gnu: icecat: Apply fixes for CVE-2015-{0797,2708,2710,2713,2716}.Mark H Weaver2015-05-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/icecat-CVE-2015-0797.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch, gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch, gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2716.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat): Add patches.
| * gnu: inetutils: Update to 1.9.3.Ludovic Courtès2015-05-12
| | | | | | | | | | | | | | | | * gnu/packages/patches/inetutils-syslogd.patch: Remove. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/admin.scm (inetutils): Bump to 1.9.3. [source]: Remove patch. [native-inputs]: Remove.
| * gnu: wpa-supplicant: Add security fixes.Mark H Weaver2015-05-11
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/wpa-supplicant-2015-2-fix.patch, gnu/packages/patches/wpa-supplicant-2015-3-fix.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt1.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt2.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt3.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt4.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt5.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/admin.scm (wpa-supplicant-light)[source]: Add patches.
| * gnu: Add tvtime.Alex Kost2015-05-10
| | | | | | | | | | | | | | | | | | | | * gnu/packages/tv.scm, gnu/packages/patches/tvtime-gcc41.patch, gnu/packages/patches/tvtime-pngoutput.patch, gnu/packages/patches/tvtime-videodev2.patch, gnu/packages/patches/tvtime-xmltv.patch: New files. * gnu-system.am (GNU_SYSTEM_MODULES): Add package. (dist_patch_DATA): Add patches.
| * Remove leftover patches.Cyril Roelandt2015-05-10
| | | | | | | | | | | | | | | | * gnu/packages/patches/guix-test-networking.patch: Delete it. * gnu/packages/patches/libtool-skip-tests.patch: Delete it. * gnu/packages/patches/python-sqlite-3.8.4-test-fix.patch: Delete it. * gnu/packages/patches/udev-gir-libtool.patch: Delete it. * gnu-system.am (dist_patch_DATA): Remove them as well.
| * gnu: wicd: Add patch to fix template instantiation.Ludovic Courtès2015-05-09
| | | | | | | | | | | | * gnu/packages/patches/wicd-template-instantiation.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/wicd.scm (wicd)[source]: Use it.
| * gnu: subversion: Add fix for sqlite-3.8.9.Mark H Weaver2015-05-08
| | | | | | | | | | | | * gnu/packages/patches/subversion-sqlite-3.8.9-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/version-control.scm (subversion): Add patch.
| * gnu: linux-libre: Update to 4.0.2.Mark H Weaver2015-05-07
| | | | | | | | | | | | * gnu/packages/patches/linux-libre-libreboot-fix.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (linux-libre): Update to 4.0.2. Remove patch.
| * gnu: Add GnuCash.Ricardo Wurmus2015-05-07
| | | | | | | | | | * gnu/packages/gnucash.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| * gnu: Add WebkitGTK 2.4.8.Ricardo Wurmus2015-05-07
| | | | | | | | | | | | * gnu/packages/webkit.scm (webkitgtk-2.4): New variable. * gnu/packages/patches/webkitgtk-2.4.8-gmutexlocker.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
| * gnu: serf: Apply upstream fixes.Mark H Weaver2015-05-07
| | | | | | | | | | | | | | | | * gnu/packages/patches/serf-comment-style-fix.patch, gnu/packages/patches/serf-deflate-buckets-test-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/web.scm (serf): Add patches. Remove 'remove-non-c89-comment' phase.
| * gnu: Add postgresql-service.David Thompson2015-05-07
| | | | | | | | | | | | * gnu/services/databases.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi ("Database Services"): New subsubsection.
| * gnu: hop: Remove use of patchelf.Eric Bavier2015-05-06
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/hop-linker-flags.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/scheme.scm (source)[patches]: Use it. (arguments)[phases]: Remove patch-rpath phase. [modules, imported-modules]: Remove. (native-inputs): Remove field.
| * services: Group desktop services in (gnu services desktop).Ludovic Courtès2015-05-05
| | | | | | | | | | | | | | | | | | | | | | * gnu/services/colord.scm, gnu/services/dbus.scm, gnu/services/upower.scm: Remove. * gnu/services/desktop.scm: New file, with contents taken from the above files. * gnu-system.am (GNU_SYSTEM_MODULES): Adjust accordingly. * doc/guix.texi (Desktop Services): New section. (Various Services): Move colord-service and upower-service from here to "Desktop Services".
| * gnu: fltk: Fix undefined symbol errors for shared libraries.Eric Bavier2015-05-05
| | | | | | | | | | | | * gnu/packages/patches/fltk-shared-lib-defines.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/fltk.scm (source)[patches]: New field.
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