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* gnu: wget: Fix CVE-2017-6508.Leo Famulari2017-03-10
| | | | | | * gnu/packages/patches/wget-CVE-2017-6508.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/wget.scm (wget)[source]: Use it.
* gnu: Add r-fnn.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-fnn): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-pbapply.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-pbapply): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-vgam.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-vgam): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: vsearch: Update to 2.4.2.Ben Woodcroft2017-03-11
| | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.2.
* gnu: Add r-ape.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/bioinformatics.scm (r-ape): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-fpc.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-fpc): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-trimcluster.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-trimcluster): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-robustbase.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-robustbase): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-deoptimr.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-deoptimr): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-prabclus.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-prabclus): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-mclust.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-mclust): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-flexmix.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-flexmix): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-modeltools.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-modeltools): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add r-diptest.Raoul Jean Pierre Bonnal2017-03-11
| | | | | | * gnu/packages/statistics.scm (r-diptest): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: Add obnam.Arun Isaac2017-03-10
| | | | | | * gnu/packages/backup.scm (obnam): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: icestorm: Replace reference in icebox_vlog.Theodoros Foradis2017-03-10
| | | | | * gnu/packages/fpga.scm (icestorm)[arguments]: Add phase "fix-usr-local" to replace reference to /usr/local/share.
* gnu: dub: Update to 1.2.2.Danny Milosavljevic2017-03-10
| | | | * gnu/packages/ldc.scm (dub): Update to 1.2.2.
* services: openssh: Fix 'PrintLastLog' default behaviour.Clément Lassieur2017-03-10
| | | | | | | | | | | | * gnu/services/ssh.scm (openssh-config-file): Add 'print-last-log?' option. (<openssh-configuration>)[print-last-log?]: Add it. (openssh-activation): Touch /var/log/lastlog. * doc/guix.texi (Networking Services): Document 'print-last-log?'. Before that, the service did not work as expected because /var/log/lastlog did not exist. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* services: openssh: Remove deprecated options.Clément Lassieur2017-03-10
| | | | | | | | | * gnu/services/ssh.scm (openssh-config-file): Remove them. (<openssh-configuration>)[rsa-authentication?]: Remove it. (<openssh-configuration>)[protocol-number]: Remove it. * doc/guix.texi (Networking Services): Remove them. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* services: openssh: Enable PAM.Clément Lassieur2017-03-10
| | | | | | | | | | | * gnu/services/ssh.scm: (openssh-pam-services): New procedure. (openssh-service-type): Use it to extend PAM-ROOT-SERVICE-TYPE. (<openssh-configuration>)[challenge-response-authentication?]: New field. (<openssh-configuration>)[use-pam?]: New field. (openssh-config-file): Add them. * doc/guix.texi (Networking Services): Document them. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* system: Avoid '_' as a pattern variable in 'match'.Ludovic Courtès2017-03-10
| | | | | * gnu/system.scm (operating-system-root-file-system): Don't use '_' as a wildcard in 'match', to cope with literal semantics in 2.2.
* services: Create /var/log upon activation.Christopher Baines2017-03-10
| | | | | | | | | When launching a container created with guix system container, the attempt to create /var/log/wtmp would fail, as /var/log did not exist. * gnu/services.scm (activation-script): Create /var/log Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* services: Add exim-service-type.Carlo Zancanaro2017-03-10
| | | | | | | | | | * gnu/services/mail.scm (<exim-configuration>): New record type. (exim-computed-config-file, exim-shepherd-service, exim-activation, exim-etc, exim-profile): New procedures. (exim-service-type, %exim-accounts): New variables. * doc/guix.text (Mail Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hmmer: Build reproducibly.Ben J. Woodcroft2017-03-10
| | | | | * gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file. * gnu/packages/bioinformatics.scm (hmmer): Use it.
* gnu: Add sambamba.Ricardo Wurmus2017-03-10
| | | | | * gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New variables.
* gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].Leo Famulari2017-03-10
| | | | * gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
* gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'.ng02017-03-09
| | | | | | | | * gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet' and '--with-lmdb'. [inputs]: Add 'lmdb' and 'kyotocabinet'. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* gnu: neomutt: Update to 20170306.ng02017-03-09
| | | | | | * gnu/packages/mail.scm (neomutt): Update to 20170306. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* Revert "gnu: neomutt: Configure with 'lmdb' and 'tokyocabinet'."ng02017-03-09
| | | | | | | | | 'kyotocabinet' is more current than tokyocabinet in development and supported in neomutt aswell. This reverts commit ef91e2b964ec0952698dd1bf7daf76624fed2145. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* gnu: hiawatha: Adjust description.ng02017-03-09
| | | | | | * gnu/packages/web.scm (hiawatha)[description]: Adjust it. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* gnu: Add font-tamzen.ng02017-03-09
| | | | | | * gnu/packages/fonts.scm (font-tamzen): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* gnu: btrfs-progs/static: Correct description.Tobias Geerinckx-Rice2017-03-09
| | | | | * gnu/packages/linux.scm (btrfs-progs/static)[description]: Use the correct name of the btrfs-progs package and @command{} mark-up.
* gnu: btrfs-progs: Update to 4.10.Tobias Geerinckx-Rice2017-03-09
| | | | * gnu/packages/linux.scm (btrfs-progs): Update to 4.10.
* gnu: ibus-anthy: Update to 1.5.9.Tobias Geerinckx-Rice2017-03-09
| | | | * gnu/packages/ibus.scm (ibus-anthy): Update to 1.5.9.
* gnu: ibus: Update to 1.5.15.Tobias Geerinckx-Rice2017-03-09
| | | | * gnu/packages/ibus.scm (ibus): Update to 1.5.15.
* gnu: pius: Update to 2.2.4.Tobias Geerinckx-Rice2017-03-09
| | | | * gnu/packages/gnupg.scm (pius): Update to 2.2.4.
* gnu: youtube-dl: Update to 2017.03.07.Tobias Geerinckx-Rice2017-03-09
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2017.03.07.
* gnu: graphicsmagick: Build with 16 bit quantum depth.Arun Isaac2017-03-09
| | | | | | | | | | Octave requires graphicsmagick to be built with 16 bit quantum depth. * gnu/packages/imagemagick.scm (graphicsmagick)[arguments]: Add "--with-quantum-depth=16" and "--enable-quantum-library-names" to #:configure-flags. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: octave: Build with curl and graphicsmagick.Arun Isaac2017-03-09
| | | | | | * gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: xf86-input-libinput: Update to 0.25.0.Marius Bakke2017-03-09
| | | | * gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.25.0.
* gnu: Add python2-larch.Arun Isaac2017-03-09
| | | | | | * gnu/packages/python.scm (python2-larch): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add python2-tracing.Arun Isaac2017-03-09
| | | | | | * gnu/packages/python.scm (python2-tracing): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add python2-ttystatus.Arun Isaac2017-03-09
| | | | | | * gnu/packages/python.scm (python2-ttystatus): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add python2-cliapp.Arun Isaac2017-03-09
| | | | | | * gnu/packages/python.scm (python2-cliapp): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: python-numpy-documentation: Use full git commit hash in submodule.Marius Bakke2017-03-09
| | | | | | * gnu/packages/python.scm (python-numpy-documentation, python2-numpy-documentation)[native-inputs]: Update hash of SCIPY-SPHINX-THEME. Fix indentation of a line.
* gnu: Remove obsolete numpy comment.Marius Bakke2017-03-09
| | | | * gnu/packages/python.scm: Remove comment.
* gnu: inetutils: Disable parallel tests.Marius Bakke2017-03-09
| | | | * gnu/packages/admin.scm (inetutils)[arguments]: Add #:parallel-tests? #f.
* gnu: python-pandas: Really fix build on 32bit.Marius Bakke2017-03-09
| | | | | * gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion with same-named test.
* hydra: Really disable 32-to-64-bit cross-builds.Ludovic Courtès2017-03-09
| | | | | | | | | | Fixes <http://bugs.gnu.org/26022>. Reported by Efraim Flashner <efraim@flashner.co.il>. * build-aux/hydra/gnu-system.scm (hydra-jobs)[cross-jobs](from-32-to-64?): Check whether TARGET contains "64" rather than checking whether TARGET ends in "64", which is rarely the case. (same?): Add special case for armhf-linux.
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