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* gnu: Move Python packages from crypto to python-crypto.Ludovic Courtès2017-11-16
| | | | | | | | * gnu/packages/crypto.scm (python-asn1crypto, python2-asn1crypto) (python-pynacl, python2-roca-detect): Move to python-crypto.scm. * gnu/packages/gnupg.scm (python2-pgpdump): Move to python-crypto.scm. * gnu/packages/python-crypto.scm (python-asn1crypto, python2-asn1crypto) (python-pynacl, python2-pgpdump, python2-roca-detect): New variables.
* gnu: Move crypto packages from python to python-crypto.Ludovic Courtès2017-11-16
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-passlib, python2-passlib) (python-py-bcrypt, python2-py-bcrypt) (python-paramiko, python2-paramiko, python-ecdsa, python2-ecdsa) (python-pycrypto, python2-pycrypto, python-keyring, python2-keyring) (python-certifi, python2-certifi) (python-cryptography-vectors, python2-cryptography-vectors) (python-cryptography, python2-cryptography) (python-pyopenssl, python2-pyopenssl) (python-axolotl-curve25519, python2-axolotl-curve25519) (python-axolotl, python2-axolotl, python2-slowaes) (python-pyaes, python2-pyaes): Move to... * gnu/packages/python-crypto.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/admin.scm, gnu/packages/backup.scm, gnu/packages/crypto.scm, gnu/packages/finance.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/messaging.scm, gnu/packages/openstack.scm, gnu/packages/python-web.scm, gnu/packages/tls.scm, gnu/packages/xorg.scm: Adjust accordingly.
* cve: Use 'http-fetch/cached' instead of having custom caching.Ludovic Courtès2017-11-16
| | | | | | | | | | | That way CVE fetching benefits from 'If-Modified-Since' handling. * guix/http-client.scm (http-fetch/cached): Add #:write-cache and #:cache-miss parameters and honor them. * guix/cve.scm (%current-year-ttl, %past-year-ttl): Reduce. (call-with-cve-port): Remove. (write-cache): New procedure. (fetch-vulnerabilities): Rewrite in terms of 'http-fetch/cached'.
* download: Improve efficiency of 'write-request' over TLS.Ludovic Courtès2017-11-16
| | | | | | | | This is another instance of <https://bugs.gnu.org/22966>. The Microsoft-IIS/7.5 server at static.nvd.nist.gov would sometimes hang when receiving our requests byte by byte. * guix/build/download.scm (tls-wrap) [!guile-2.0]: Add 'setvbuf' call.
* gnu: linux-libre: Update to 4.14.Mark H Weaver2017-11-16
| | | | | | | | | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.14. (%linux-libre-hash): Update hash. * gnu/packages/aux-files/linux-libre/4.13-arm.conf, gnu/packages/aux-files/linux-libre/4.13-i686.conf, gnu/packages/aux-files/linux-libre/4.13-x86_64.conf: Delete files. * gnu/packages/aux-files/linux-libre/4.14-arm.conf, gnu/packages/aux-files/linux-libre/4.14-i686.conf, gnu/packages/aux-files/linux-libre/4.14-x86_64.conf: New files. * Makefile.am (AUX_FILES): Update accordingly.
* gnu: linux-libre@4.9: Update to 4.9.62.Mark H Weaver2017-11-16
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.62.
* gnu: linux-libre@4.4: Update to 4.4.98.Mark H Weaver2017-11-16
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.98.
* gnu: icecat: Add more fixes from upstream mozilla-esr52.Mark H Weaver2017-11-16
| | | | | | | | | | | Add fixes for CVE-2017-7830, the remaining 1/2 changesets for CVE-2017-7828, the remaining 1/19 changesets for CVE-2017-7826, and selected other fixes. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository. * gnu/packages/patches/icecat-bug-1348660-pt5.patch, gnu/packages/patches/icecat-bug-1415133.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
* gnu: icecat: Label patches to reflect CVE assignments.Mark H Weaver2017-11-16
| | | | | | | | Document that we include 18/19 changesets for CVE-2017-7826, and 1/2 changesets for CVE-2017-7828. * gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE assignments.
* gnu: iproute2: Update to 4.14.1.Tobias Geerinckx-Rice2017-11-15
| | | | * gnu/packages/linux.scm (iproute): Update to 4.14.1.
* gnu: gnucash: Use HTTPS for www.gnucash.org.Tobias Geerinckx-Rice2017-11-15
| | | | * gnu/packages/gnucash.scm (gnucash, gnucash-docs)[home-page]: Use HTTPS.
* gnu: gnucash: Update to 2.6.18.Tobias Geerinckx-Rice2017-11-15
| | | | * gnu/packages/gnucash.scm (gnucash): Update to 2.6.18.
* gnu: youtube-dl: Update to 2017.11.15.Tobias Geerinckx-Rice2017-11-15
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2017.11.15.
* gnu: geoclue: Use HTTPS for home page.Tobias Geerinckx-Rice2017-11-15
| | | | * gnu/packages/gnome.scm (geoclue)[home-page]: Use HTTPS.
* gnu: geoclue: Update to 2.4.7.Tobias Geerinckx-Rice2017-11-15
| | | | * gnu/packages/gnome.scm (geoclue): Update to 2.4.7.
* gnu: aria2: Update to 1.33.1.Tobias Geerinckx-Rice2017-11-15
| | | | * gnu/packages/bittorrent.scm (aria2): Update 1.33.1.
* gnu: smartmontools: Mark up description.Tobias Geerinckx-Rice2017-11-15
| | | | * gnu/packages/admin.scm (smartmontools)[description]: Use @dfn.
* gnu: smartmontools: Update to 6.6.Tobias Geerinckx-Rice2017-11-15
| | | | * gnu/packages/admin.scm (smartmontools): Update to 6.6.
* gnu: devhelp: Update to 3.26.0.Kei Kebreau2017-11-14
| | | | * gnu/packages/gnome.scm (devhelp): Update to 3.26.0.
* gnu: Add guile-wiredtiger.Kristofer Buffington2017-11-14
| | | | | | * gnu/packages/databases.scm (guile-wiredtiger): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* download: Pass the timeout to 'ftp-retr'.Ludovic Courtès2017-11-14
| | | | | | | | | | This ensures the timeout applies when connecting to the port returned by PASV. * guix/ftp-client.scm (ftp-list): Add #:timeout parameter. Use 'connect*' instead of 'connect' and pass TIMEOUT. (ftp-retr): Likewise. * guix/build/download.scm (ftp-fetch): Pass TIMEOUT to 'ftp-retr'.
* tests: install: Increase target-size.Oleg Pykhalov2017-11-15
| | | | | | | 1200 MiB are too small for a btrfs-root-os, thus let increase it. * gnu/tests/install.scm (run-install): Increase target-size to 2200 MiB. (%btrfs-root-installation-script): Increase my-root partition size to 2G.
* grafts: Clarify the status of the workaround for <http://bugs.gnu.org/24659>.Leo Famulari2017-11-14
| | | | * guix/build/graft.scm (mkdir-p*): Annotate.
* gnu: Update awscli to 1.11.185.David Thompson2017-11-14
| | | | * gnu/packages/python-web.scm (awscli): Update to 1.11.185.
* gnu: gnome-calculator: Update to 3.26.0.Kei Kebreau2017-11-14
| | | | * gnu/packages/gnome.scm (gnome-calculator): Update to 3.26.0.
* gnu: gnome-system-monitor: Update to 3.26.0.Kei Kebreau2017-11-14
| | | | * gnu/packages/gnome.scm (gnome-system-monitor): Update to 3.26.0.
* gnu: exim: Use HTTPS for home page.Tobias Geerinckx-Rice2017-11-14
| | | | * gnu/packages/mail.scm (exim)[home-page]: Use HTTPS.
* gnu: iproute2: Update to 4.14.0.Tobias Geerinckx-Rice2017-11-14
| | | | * gnu/packages/linux.scm (iproute): Update to 4.14.0.
* gnu: Move web packages from python to python-web.Ludovic Courtès2017-11-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is in part to address <https://bugs.gnu.org/27284>. * gnu/packages/python.scm (python-httplib2, python2-httplib2) (python-sockjs-tornado, python2-sockjs-tornado) (python-flask-babel, python2-flask-babel) (python-html5lib, python2-html5lib) (python-html5lib-0.9, python2-html5lib-0.9) (python-html5-parser, python2-html5-parser) (python-webencodings, python2-webencodings) (python-openid, python2-openid, python-cssutils, python2-cssutils) (python-cssselect, python2-cssutils) (python-openid-cla, python2-openid-cla) (python-openid-teams, python2-openid-teams) (python-tornado, python2-tornado) (python-tornado-http-auth, python-terminado, python2-terminado) (python-webob, python2-webob, python-zope-event, python2-zope-event) (python-zope-interface, python2-zope-interface) (python-zope-exceptions, python2-zope-exceptions) (python-zope-testing, python2-zope-testing) (python-zope-testrunner, python2-zope-testrunner) (python-zope-i18nmessageid, python2-zope-i18nmessageid) (python-zope-schema, python2-zope-schema) (python-zope-configuration, python2-zope-configuration) (python-zope-proxy, python2-zope-proxy) (python-zope-location, python2-zope-location) (python-zope-security, python2-zope-security) (python-zope-component, python2-zope-component) (python-ndg-httpsclient, python2-ndg-httpsclient) (python-websocket-client, python2-websocket-client) (python-requests-toolbelt, python2-requests-toolbelt) (python-rauth, python2-rauth, python-urllib3, python2-urllib3) (awscli, python-wsgiproxy2, python2-wsgiproxy2) (python-pastedeploy, python2-pastedeploy) (python-webtest, python2-webtest, python-flask, python2-flask) (python-flast-wtf, python2-flask-wtf) (python-flask-multistatic, python2-flask-multistatic) (python-cookies, python2-cookies) (python-responses, python2-responses) (python-geventhttpclient, python2-geventhttpclient) (python-requests-oauthlib, python2-requests-oauthlib) (python-url, python2-url, python-cachecontrol, python2-cachecontrol) (python-betamax, python2-betamax) (python-betamax-matchers, python2-betamax-matchers) (python-s3transfer, python2-s3transfer) (python-flask-restful, python-flask-basicauth) (python-flask-sqlalchemy, python-flask-restplus) (python-flask-restful-swagger, python-htmlmin, python2-htmlmin) (python-flask-htmlmin, python2-flask-htmlmin) (python-flask-login, python2-flask-login) (python-oauth2client, python-flask-oidc) (python-webassets, python-cssmin, python2-cssmin) (python-elasticsearch, python2-elasticsearch) (python-flask-script, python2-flask-script) (python-flask-migrate, python2-flask-migrate) (python-genshi, python2-genshi) (python-flask-principal, python2-flask-principal) (python-flask-httpauth, python2-flask-httpauth) (python-uritemplate, python2-uritemplate): Move to... * gnu/packages/python-web.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/admin.scm, gnu/packages/backup.scm, gnu/packages/dav.scm, gnu/packages/django.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/logging.scm, gnu/packages/mail.scm, gnu/packages/music.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/rdf.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm: Adjust accordingly.
* gnu: diamond: Update to 0.9.13.Ben Woodcroft2017-11-14
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.13.
* gnu: Move test packages from perl to perl-check.Ricardo Wurmus2017-11-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/perl.scm (perl-test2-bundle-extended, perl-test2-plugin-nowarnings, perl-test-base, perl-test-class, perl-test-class-most, perl-test-cleannamespaces, perl-test-command, perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep, perl-test-differences, perl-test-directory, perl-test-eol, perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist, perl-test-files, perl-test-harness, perl-test-leaktrace, perl-test-longstring, perl-test-manifest, perl-test-memory-cycle, perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs, perl-test-notabs, perl-test-nowarnings, perl-test-number-delta, perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires, perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint, perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn, perl-test-warnings, perl-test-without-module, perl-test-writevariants, perl-test-yaml, perl-test-trailingspace): Move variables to ... * gnu/packages/perl-check.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/admin.scm, gnu/packages/bioinformatics.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/glib.scm, gnu/packages/gnupg.scm, gnu/packages/image-viewers.scm, gnu/packages/language.scm, gnu/packages/networking.scm, gnu/packages/package-management.scm, gnu/packages/perl.scm, gnu/packages/terminals.scm, gnu/packages/tex.scm, gnu/packages/version-control.scm, gnu/packages/web.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm: Use perl-check module.
* gnu: ghc-tls: Move to (gnu packages tls).Ricardo Wurmus2017-11-13
| | | | | | * gnu/packages/haskell.scm (ghc-tls): Move from here... * gnu/packages/tls.scm (ghc-tls): ...to here. * gnu/packages/haskell-web.scm: Use (gnu packages tls).
* gnu: Move crypto packages from haskell to haskell-crypto.Ricardo Wurmus2017-11-13
| | | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse, ghc-crypto-api, ghc-crypto-api-tests, ghc-cryptohash, ghc-cryptohash-md5, ghc-cryptohash-sha1, ghc-cryptonite, ghc-digest, ghc-entropy, ghc-pem, ghc-puremd5, ghc-sha, ghc-x509, ghc-x509-store, ghc-x509-validation, ghc-x509-system): Move variables to ... * gnu/packages/haskell-crypto.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/haskell.scm, gnu/packages/haskell-web.scm, gnu/packages/version-control.scm: Include haskell-crypto module.
* gnu: Move web packages from haskell to haskell-web.Ricardo Wurmus2017-11-13
| | | | | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-tagsoup, ghc-cookie, ghc-http-types, ghc-http, ghc-http-client, ghc-http-client-tls, ghc-http-date, ghc-http2, ghc-http-conduit, ghc-wai, ghc-wai-logger, ghc-wai-extra, ghc-wai-conduit, ghc-warp, ghc-warp-tls, ghc-xss-sanitize, ghc-css-text, ghc-mime-types, ghc-html, ghc-xhtml, ghc-blaze-html, ghc-aeson, ghc-aeson-pretty, ghc-aeson-qq, ghc-multipart): Move variables to ... * gnu/packages/haskell-web.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/haskell.scm, gnu/packages/idris.scm, gnu/packages/version-control.scm, gnu/packages/wm.scm: Include haskell-web module.
* gnu: Move testing packages from haskell to haskell-check.Ricardo Wurmus2017-11-13
| | | | | | | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-clock-bootstrap, ghc-tasty-ant-xml, ghc-tasty-smallcheck, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty, ghc-tasty-hunit, ghc-tasty-kat, ghc-tasty-th, ghc-tasty-rerun, ghc-quickcheck-instances, ghc-quickcheck-unicode, ghc-quickcheck-io, ghc-quickcheck, ghc-test-framework, ghc-test-framework-hunit, ghc-test-framework-quickcheck2, ghc-test-framework-th, ghc-hunit, hspec-discover, ghc-hspec-core, ghc-hspec-meta, ghc-hspec, ghc-hspec-contrib, ghc-hspec-expectations): Move variables to ... * gnu/packages/haskell-check.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/haskell.scm, gnu/packages/idris.scm, gnu/packages/version-control.scm, gnu/packages/wm.scm: Include haskell-check module.
* gnu: cd-hit: Update source tarball hash.Ricardo Wurmus2017-11-13
| | | | * gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
* Revert "gnu: totem: Enable parallel build."Kei Kebreau2017-11-13
| | | | This reverts commit e5f748a6c0c774265f52c7246ee7b80bec6d3522.
* services: guix: Remove dependency on 'lsof'.Ludovic Courtès2017-11-13
| | | | | | | | | | This is a followup to b8f59cdc20e9d83ce63523ef917e95fcee07f134: 'list-runtime-roots' no longer depends on 'lsof'. * gnu/services/base.scm (<guix-configuration>)[lsof]: Remove. (guix-shepherd-service): Adjust accordingly. * doc/guix.texi (Base Services): Adjust accordingly. * gnu/system.scm (%base-packages): Remove LSOF.
* gnu: guix: Update snapshot.Ludovic Courtès2017-11-13
| | | | * gnu/packages/package-management.scm (guix): Update to ff23b47.
* tests: 'guix-gc.sh' passes even when 'out' or 'drv' are defined as env vars.Ludovic Courtès2017-11-13
| | | | | | | | | This fixes a test failure exhibited by fb17a89912c2a3738dae716e30481c11e1c6f0ac whereby assignments to 'out' in guix-gc.sh would go to the 'out' environment variable, when it exists, which in turn prevents garbage collection of $out. * tests/guix-gc.sh: Add 'unset' invocations.
* gnu: ibus: Update to 1.5.17.Efraim Flashner2017-11-13
| | | | * gnu/packages/ibus.scm (ibus): Update to 1.5.17.
* gnu: ibus: Enable wayland support.Efraim Flashner2017-11-13
| | | | | | * gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable wayland support. [inputs]: Add wayland.
* gnu: libsoup: Update to 2.60.2.Kei Kebreau2017-11-12
| | | | * gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
* list-runtime-roots: Ignore PIDs we cannot access.Ludovic Courtès2017-11-12
| | | | | | | | This allows running as non-root. Fixes a regression introduced in b8f59cdc20e9d83ce63523ef917e95fcee07f134. * nix/scripts/list-runtime-roots.in (referenced-files): Handle EACCES in addition to ENOENT.
* download: Use HTTPS for the first ImageMagick mirror.Leo Famulari2017-11-12
| | | | * guix/download.scm (%mirrors)[imagemagick]: Use HTTPS for <sunsite.icm.edu.pl>.
* download: Try FTP servers last.Leo Famulari2017-11-12
| | | | | * guix/download.scm (%mirrors)[savannah, kernel.org, apache, xorg, imagemagick]: Re-arrange so that FTP is last.
* gnu: imagemagick: Update to 6.9.9-23.Leo Famulari2017-11-12
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
* list-runtime-roots: Canonicalize store items.Ludovic Courtès2017-11-12
| | | | | | | | | | Looking at 'addAdditionalRoots' in libstore/gc.cc, it looks like it should always have been this way. In practice it probably doesn't make much of a difference. * nix/scripts/list-runtime-roots.in (canonicalize-store-item): New procedure. <top level>: Use it.
* list-runtime-roots: Do not use 'lsof'.Ludovic Courtès2017-11-12
| | | | | | | | | This makes things a bit faster (0.8s instead of 1.4s on my laptop). * nix/scripts/list-runtime-roots.in (lsof-roots): Remove. (proc-fd-roots): Return the empty list when 'scandir' returns #f. (referenced-files): New procedure. Use it at the top level.
* doc: Better explain GC roots.Ludovic Courtès2017-11-12
| | | | | | | | | | | Fixes <https://bugs.gnu.org/24194>. Reported by J. Eppler <j.eppler@openmailbox.org>. * doc/guix.texi (Invoking guix-daemon): Add index entries for GC roots. Add xref to "Invoking guix gc". (Invoking guix gc): Add the string "GC roots"; mention /var/guix/gcroots. (Additional Build Options): Add index entries. Better explain --root. (Invoking guix environment): Add xref to "Invoking guix gc".
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