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* gnu: fabric: Update to 1.14.0.Roel Janssen2018-04-28
| | | | | * gnu/packages/admin.scm (fabric): Update to 1.14.0; [native-inputs]: Add python2-pynacl and python2-bcrypt.
* gnu: roary: Update to 3.12.0.Roel Janssen2018-04-28
| | | | * gnu/packages/bioinformatics.scm (roary): Update to 3.12.0.
* gnu: gnome-terminal: Update to 3.28.1.Roel Janssen2018-04-28
| | | | * gnu/packages/gnome.scm (gnome-terminal): Update to 3.28.1.
* gnu: vte: Update to 0.52.1.Roel Janssen2018-04-28
| | | | * gnu/packages/gnome.scm (vte): Update to 0.52.1.
* gnu: star: Update to 2.6.0a.Roel Janssen2018-04-28
| | | | * gnu/packages/bioinformatics.scm (star): Update to 2.6.0a.
* gnu: multiqc: Update to 1.5.Roel Janssen2018-04-28
| | | | * gnu/packages/bioinformatics.scm (multiqc): Update to 1.5.
* gnu: express: Link with shared protobuf library.Roel Janssen2018-04-28
| | | | | * gnu/packages/bioinformatics.scm (express): Link with shared protobuf library.
* gnu: Add r-codedepends.Ricardo Wurmus2018-04-28
| | | | * gnu/packages/cran.scm (r-codedepends): New variable.
* gnu: bamtools: Update to 2.5.1.Roel Janssen2018-04-28
| | | | * gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.1.
* gnu: taxtastic: Update to 0.8.5.Roel Janssen2018-04-28
| | | | * gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.5.
* gnu: nnn: Update to 1.7.Roel Janssen2018-04-28
| | | | * gnu/packages/admin.scm (nnn): Update to 1.7.
* guix system: Report wrong file system 'device' fields.Ludovic Courtès2018-04-27
| | | | | | | | | | | | | | | | Previously, if you wrote (device "my-label") without (title 'label), you'd get: guix system: error: stat: No such file or directory: "my-label" Now you get a proper error and a hint. Reported by Pierre-Antoine Rouby. * guix/scripts/system.scm (check-file-system-availability)[literal]: New variable. Loop over LITERAL. * gnu/system/file-systems.scm (%pseudo-file-system-types): New variable. * guix/ui.scm (display-hint): Make public.
* doc: Add tips for Vim users.Ludovic Courtès2018-04-27
| | | | * doc/contributing.texi (Formatting Code): Add a paragraph about Vim.
* gnu: libstaroffice: Update to 0.0.6.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.6.
* gnu: perl-multidimensional: Update to 0.014.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/perl.scm (perl-multidimensional): Update to 0.014.
* gnu: perl-bareword-filehandles: Update to 0.006.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/perl.scm (perl-bareword-filehandles): Update to 0.006.
* gnu: vsearch: Update to 2.8.0.Ben Woodcroft2018-04-27
| | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.8.0.
* gnu: diamond: Update to 0.9.21.Ben Woodcroft2018-04-27
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.21.
* gnu: emacs-websocket: Update to 1.10.Ricardo Wurmus2018-04-27
| | | | | * gnu/packages/emacs.scm (emacs-websocket): Update to 1.10. [source]: Fetch from git.
* gnu: r-robustbase: Update to 0.93-0.Ricardo Wurmus2018-04-27
| | | | * gnu/packages/statistics.scm (r-robustbase): Update to 0.93-0.
* gnu: r-r-oo: Update to 1.22.0.Ricardo Wurmus2018-04-27
| | | | * gnu/packages/statistics.scm (r-r-oo): Update to 1.22.0.
* gnu: r-foreign: Update to 0.8-70.Ricardo Wurmus2018-04-27
| | | | * gnu/packages/statistics.scm (r-foreign): Update to 0.8-70.
* gnu: r-metap: Update to 0.9.Ricardo Wurmus2018-04-27
| | | | * gnu/packages/cran.scm (r-metap): Update to 0.9.
* gnu: r-pillar: Update to 1.2.2.Ricardo Wurmus2018-04-27
| | | | * gnu/packages/cran.scm (r-pillar): Update to 1.2.2.
* gnu: emacs-slack: Update to 0-4.d903954.Ricardo Wurmus2018-04-27
| | | | * gnu/packages/emacs.scm (emacs-slack): Update to 0-4.d903954.
* services: Set default <dhcpd-configuration> version to "4".Chris Marusich2018-04-27
| | | | | | * gnu/services/networking.scm (<dhcpd-configuration>) <version>: Set the default to "4" instead of "6"; both our manual and upstream says the default should be "4".
* gnu: thefuck: Use INVOKE.Tobias Geerinckx-Rice2018-04-27
| | | | | * gnu/packages/admin.scm (thefuck)[arguments]: Substitute INVOKE for SYSTEM* and end phase with explicit #t.
* gnu: thefuck: Update to 3.26.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/admin.scm (thefuck): Update to 3.26.
* gnu: infamous-plugins: Update to 0.2.04.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/audio.scm (infamous-plugins): Update to 0.2.04.
* gnu: infamous-plugins: Use HTTPS home page.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/audio.scm (infamous-plugins)[home-page]: Use HTTPS.
* gnu: drumstick: Update to 1.1.1.Tobias Geerinckx-Rice2018-04-27
| | | | | * gnu/packages/music.scm (drumstick): Update to 1.1.1. [inputs]: Remove fluidsynth.
* gnu: mpd: Update to 0.20.19.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/mpd.scm (mpd): Update to 0.20.19.
* gnu: tuxguitar: Update to 1.5.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/music.scm (tuxguitar): Update to 1.5.
* gnu: tuxguitar: Update home page.Tobias Geerinckx-Rice2018-04-27
| | | | | | The tuxguitar.pw domain is infested with squatters. * gnu/packages/music.scm (tuxguitar)[home-page]: Update.
* gnu: perl-clone: Update to 0.39.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/perl.scm (perl-clone): Update to 0.39.
* gnu: perl-strictures@2: Update to 2.000004.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/perl.scm (perl-strictures-2): Update to 2.000004.
* gnu: ranger: Fix description and tests.Eric Bavier2018-04-26
| | | | | | * gnu/packages/disk.scm (ranger)[arguments]: Replace '#:phases' with '#:test-target'. [description]: Remove texinfo markup. 'VI' -> 'Vi'.
* gnu: Add Ranger.Eric Bavier2018-04-26
| | | | * gnu/packages/disk.scm (ranger): New variable.
* gnu: mumps: Update to 5.1.2.Eric Bavier2018-04-26
| | | | * gnu/packages/maths.scm (mumps): Update to 5.1.2.
* gnu: scotch: Update to 6.0.5a.Eric Bavier2018-04-26
| | | | | | | | | | * gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files. * gnu/packages/patches/scotch-build-parallelism.patch, gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (scotch): Update to 6.0.5a. [source](patches): Adjust accordingly.
* gnu: darktable: Update to 2.4.3.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/photo.scm (darktable): Update to 2.4.3.
* gnu: quassel: Use HTTPS home page.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/irc.scm (quassel)[home-page]: Use HTTPS.
* gnu: quassel: Update to 0.12.5.Tobias Geerinckx-Rice2018-04-27
| | | | | | | * gnu/packages/irc.scm (quassel): Update to 0.12.5. [source]: Remove patch. * gnu/packages/patches/quassel-fix-tls-check.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: libetonyek: Update to 0.1.8.Tobias Geerinckx-Rice2018-04-27
| | | | gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.8.
* gnu: cpuid: Update to 20180419.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/linux.scm (cpuid): Update to 20180419.
* gnu: pcmanfm: Update to 1.3.0.Tobias Geerinckx-Rice2018-04-27
| | | | | | | * gnu/packages/lxde.scm (pcmanfm): Update to 1.3.0. [source]: Remove patch. * gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: libfm: Update to 1.3.0.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/lxde.scm (libfm): Update to 1.3.0.
* gnu: perl-log-any-adapter-log4perl: Update to 0.09.Tobias Geerinckx-Rice2018-04-27
| | | | | * gnu/packages/perl.scm (perl-log-any-adapter-log4perl): Update to 0.09. [source]: Update maintainer URI.
* gnu: perl-safe-isa: Update to 1.000010.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/perl.scm (perl-safe-isa): Update to 1.000010.
* gnu: perl-sub-quote: Update to 2.005001.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/perl.scm (perl-sub-quote): Update to 2.005001.
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