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* gnu: r-broom: Update to 0.4.5.Tobias Geerinckx-Rice2018-07-05
| | | | * gnu/packages/cran.scm (r-broom): Update to 0.4.5.
* gnu: r-broom: Use HTTPS home page.Tobias Geerinckx-Rice2018-07-05
| | | | * gnu/packages/cran.scm (r-broom)[home-page]: Use HTTPS.
* Don't force colour in aliases.Tobias Geerinckx-Rice2018-07-05
| | | | | | | * gnu/system/shadow.scm (default-skeletons): Substitute ‘--color=auto’ for ‘--color’ (which implies ‘=always’) in aliases. * doc/guix.texi (G-Expressions): Also adjust examples as that makes more sense.
* gnu: gtkwave: Mark up description.Tobias Geerinckx-Rice2018-07-05
| | | | * gnu/packages/fpga.scm (gtkwave)[description]: Use @dfn.
* gnu: exempi: Mark up description.Tobias Geerinckx-Rice2018-07-05
| | | | * gnu/packages/freedesktop.scm (exempi)[description]: Use @dfn.
* gnu: keepalived: Update to 2.0.5.Tobias Geerinckx-Rice2018-07-05
| | | | * gnu/packages/cluster.scm (keepalived): Update to 2.0.5.
* gnu: inxi: Update to 3.0.14-1.Tobias Geerinckx-Rice2018-07-05
| | | | * gnu/packages/admin.scm (inxi-minimal): Update to 3.0.14-1.
* gnu: linux-libre: Update to 4.17.4.Mark H Weaver2018-07-04
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.4. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.53.Mark H Weaver2018-07-04
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.53. (%linux-libre-4.14-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.111.Mark H Weaver2018-07-04
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.111.
* gnu: linux-libre@4.4: Update to 4.4.139.Mark H Weaver2018-07-04
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.139.
* gnu: Remove linux-libre@4.1.Mark H Weaver2018-07-04
| | | | | | | * gnu/packages/linux.scm (linux-libre-4.1): Remove variable. * gnu/packages/aux-files/linux-libre/4.1-i686.conf, gnu/packages/aux-files/linux-libre/4.1-x86_64.conf: Delete files. * Makefile.am (AUX_FILES): Remove them.
* gnu: pigx-scrnaseq: Update to 0.0.6.Ricardo Wurmus2018-07-05
| | | | | * gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.6. [arguments]: Remove "wrap-executable" phase.
* gnu: maven: Fix maven crash when compiling java8 code.Julien Lepiller2018-07-04
| | | | | * gnu/packages/maven.scm (maven)[arguments]: Configure classloading properly instead of adding jars to maven's classpath.
* gnu: maven-compat: Fix test failure.Julien Lepiller2018-07-04
| | | | | * gnu/packages/maven.scm (maven-compat)[arguments]: Add recreate-removed-jar phase.
* gnu: maven-artifact: Update to 3.5.4.Julien Lepiller2018-07-04
| | | | | * gnu/packages/maven.scm (maven-artifact): Update to 3.5.4. (maven-core)[arguments]: Use new version.
* gnu: maven-wagon-provider-api: Update to 3.1.0.Julien Lepiller2018-07-04
| | | | * gnu/packages/maven.scm (maven-wagon-provider-api): Update to 3.1.0.
* gnu: java-plexus-compiler-api: Update to 2.8.4.Julien Lepiller2018-07-04
| | | | * gnu/packages/java.scm (java-plexus-compiler-api): Update to 2.8.4.
* nls: Update 'fr' translation.Julien Lepiller2018-07-04
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* gnu: ledger: Use HTTPS home page URI.Arun Isaac2018-07-04
| | | | * gnu/packages/finance.scm (ledger)[home-page]: Use HTTPS URI.
* gnu: ledger: Use invoke and fix #t return.Arun Isaac2018-07-04
| | | | | | * gnu/packages/finance.scm (ledger)[arguments]: Replace system* with invoke in build-doc phase. Remove #t return from relocate-elisp phase since emacs-generate-autoloads already returns #t.
* gnu: ledger: Skip failing test.Arun Isaac2018-07-04
| | | | | | * gnu/packages/finance.scm (ledger)[arguments]: Set #:make-flags to skip failing test BaselineTest_cmd-org. Replace check phase with the check phase from gnu-build-system.
* gnu: qtox: Update to 1.16.0.Rutger Helling2018-07-04
| | | | * gnu/packages/messaging.scm (qtox): Update to 1.16.0.
* gnu: clutter-gtk: Update to 1.8.4.Tobias Geerinckx-Rice2018-07-04
| | | | * gnu/packages/gnome.scm (clutter-gtk): Update to 1.8.4.
* gnu: totem: Update to 3.26.1.Tobias Geerinckx-Rice2018-07-04
| | | | | | | I did not re-enable #:parallel-build? because I was unable to reproduce the original failure in the first place. * gnu/packages/gnome.scm (totem): Update to 3.26.1.
* gnu: exempi: Update to 2.4.5.Tobias Geerinckx-Rice2018-07-04
| | | | * gnu/packages/freedesktop.scm (exempi): Update to 2.4.5.
* gnu: gtkwave: Update to 3.3.91.Tobias Geerinckx-Rice2018-07-04
| | | | * gnu/packages/fpga.scm (gtkwave): Update to 3.3.91.
* gnu: kicad-library: Update to 4.0.7.Tobias Geerinckx-Rice2018-07-04
| | | | * gnu/packages/engineering.scm (kicad-library): Update to 4.0.7.
* gnu: kicad-library: Return #t from phases.Tobias Geerinckx-Rice2018-07-04
| | | | | * gnu/packages/engineering.scm (kicad-library)[arguments]: Substitute INVOKE for SYSTEM*.
* gnu: r-learnr: Update to 0.9.2.1.Tobias Geerinckx-Rice2018-07-04
| | | | * gnu/packages/cran.scm (r-learnr): Update to 0.9.2.1.
* gnu: Add r-loomr.Ricardo Wurmus2018-07-03
| | | | * gnu/packages/bioinformatics.scm (r-loomr): New variable.
* gnu: Add r-itertools.Ricardo Wurmus2018-07-03
| | | | * gnu/packages/cran.scm (r-itertools): New variable.
* gnu: Update stellarium to 0.18.0.Björn Höfling2018-07-03
| | | | | | | | | [[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-06-29T20:39:51+0200 using DSA]] * gnu/packages/astronomy.scm (stellarium): Update to 0.18.0. [home-page]: Update URL. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-helm-system-packages: Update to 1.10.0.Pierre Neidhardt2018-07-03
| | | | | | * gnu/packages/emacs.scm (emacs-helm-system-packages): Update to 1.10.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add pocl.Fis Trivial2018-07-03
| | | | | | * gnu/packages/opencl.scm (pocl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* tests: basic: Wait for /var/run/shepherd/socket to be ready.Ludovic Courtès2018-07-03
| | | | * gnu/tests/base.scm (run-basic-test)["shepherd socket ready"]: New test.
* Revert "packages: Optimize 'package-transitive-supported-systems'."Ludovic Courtès2018-07-03
| | | | | | | This reverts commit 24420f5ffabfbdbe913a5765e5c00e17de18fb4c. This broke 'package-transitive-supported-systems', which would return the union of supported systems instead of the intersection.
* guix system: Make 'init' idempotent again.Ludovic Courtès2018-07-03
| | | | | | | | | | | | | This fixes a regression introduced in df2f6400b1fbc282ef4d6dd7124ea1c17adc23c2: since the new 'register-path' (actually 'reset-timestamps') would make files read-only, 'delete-file-recursively' would fail to delete them. Thus, re-running 'guix system init' on an already-populated store would fail with a 'delete-file' EPERM. * guix/scripts/system.scm (copy-item): Use 'lstat' instead of 'file-exists?'. Call 'make-file-writable' on each directory below DEST.
* ui: Report file names in 'system-error' exceptions from 'delete-file'.Ludovic Courtès2018-07-03
| | | | * guix/ui.scm (delete-file): New error-reporting wrapper.
* database: 'reset-timestamps' now correctly handles symlinks.Ludovic Courtès2018-07-03
| | | | | * guix/store/database.scm (reset-timestamps): Use 'utime' with AT_SYMLINK_NOFOLLOW for symlinks.
* syscalls: Define AT_SYMLINK_NOFOLLOW et al.Ludovic Courtès2018-07-03
| | | | | | * guix/build/syscalls.scm (AT_FDCWD, AT_SYMLINK_NOFOLLOW, AT_REMOVEDIR) (AT_SYMLINK_FOLLOW, AT_NO_AUTOMOUNT, AT_EMPTY_PATH): New variables. * tests/syscalls.scm ("utime with AT_SYMLINK_NOFOLLOW"): New test.
* deduplication: Remove 'false-if-system-error', now unused.Ludovic Courtès2018-07-03
| | | | * guix/store/deduplication.scm (false-if-system-error): Remove.
* gnu: pigx-bsseq: Update to 0.0.10.Ricardo Wurmus2018-07-03
| | | | | * gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.10. [arguments]: Remove "wrap-executable" phase.
* gnu: pigx-rnaseq: Update to 0.0.4.Ricardo Wurmus2018-07-03
| | | | | * gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.4. [arguments]: Remove "wrap-executable" phase.
* gnu: pigx-chipseq: Update to 0.0.20.Ricardo Wurmus2018-07-03
| | | | * gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.20.
* gnu: ikiwiki: Include auto setup files in output.Paul Garlick2018-07-03
| | | | | | * gnu/packages/web.scm(ikiwiki)[arguments]: Add patch-Makefile phase. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: emacs-use-package: Update to commit da8c9e2.Peter Mikkelsen2018-07-03
| | | | | | | | | | | This update is needed because the release tarball from github does not contain all the files needed for us to build the package. * gnu/packages/emacs.scm (emacs-use-package): Update to commit da8c9e2. [source]: change to git. [arguments]: Enable tests. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add emacs-atom-one-dark-theme.Peter Mikkelsen2018-07-03
| | | | | | * gnu/packages/emacs.scm (emacs-atom-one-dark-theme): New variable Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: libuninameslist: Update to 20180701.Marius Bakke2018-07-03
| | | | | | * gnu/packages/fontutils.scm (libuninameslist): Update to 20180701. [source]: Change URI to use release tarball. Remove FILE-NAME. [native-inputs]: Remove.
* gnu: libuninameslist: Correct license.Marius Bakke2018-07-03
| | | | | * gnu/packages/fontutils.scm (libuninameslist)[license]: Remove GPL2. Add BSD-3 and X11-STYLE.
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