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* gnu: Add r-rbowtie2.Ricardo Wurmus2019-04-03
| | | | * gnu/packages/bioconductor.scm (r-rbowtie2): New variable.
* gnu: r-rcas: Add upstream name.Ricardo Wurmus2019-04-03
| | | | * gnu/packages/bioinformatics.scm (r-rcas)[properties]: Add upstream name.
* gnu: Add r-zfpkm.Ricardo Wurmus2019-04-03
| | | | * gnu/packages/bioconductor.scm (r-zfpkm): New variable.
* gnu: Add r-webbioc.Ricardo Wurmus2019-04-03
| | | | * gnu/packages/bioconductor.scm (r-webbioc): New variable.
* gnu: Add r-widgettools.Ricardo Wurmus2019-04-03
| | | | * gnu/packages/bioconductor.scm (r-widgettools): New variable.
* gnu: Add r-wiggleplotr.Ricardo Wurmus2019-04-03
| | | | * gnu/packages/bioconductor.scm (r-wiggleplotr): New variable.
* gnu: Add r-wrench.Ricardo Wurmus2019-04-03
| | | | * gnu/packages/bioconductor.scm (r-wrench): New variable.
* gnu: gnu-mate-icon-theme-faenza: Update to 1.20.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (gnu-mate-icon-theme-faenza): Update to 1.20.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-polkit: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-polkit): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-system-monitor: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-system-monitor): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: pluma: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (pluma): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: engrampa: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (engrampa): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: eom: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (eom): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-utils: Update to 1.22.0.Guy fleury2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-utils): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-screensaver: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-screensaver): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-netbook: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-netbook): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: backgrounds: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (backgrounds): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-calc: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-calc): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-user-guide: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-user-guide): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-control-center: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-control-center): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: caja-extensions: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (caja-extensions): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: atril: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | | * gnu/packages/mate.scm (atril): Update to 1.22.0. [arguments]<#:configure-flags>: Remove pre-GTK3 option. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: marco: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (marco): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: caja: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (caja): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-media: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-media): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-applets: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-applets): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-panel: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-panel): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-menus: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-menus): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: libmatekbd: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (libmatekbd): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: libmatemixer: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (libmatemixer): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-settings-daemon: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-settings-daemon): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-session-manager: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-session-manager): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-terminal: Update to 1.22.0guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-terminal): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: libmatewether: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (libmatewether): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-desktop: Update to 1.22.2.guy fleury iteriteka2019-04-03
| | | | | | | * gnu/packages/mate.scm (mate-desktop): Update to 1.22.0. [inputs]: Add iso-codes. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-themes: Update to 3.22.19.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-themes): Update to 3.22.19. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-icon-theme: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-icon-theme): Update to 1.20.3. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: mate-common: Update to 1.22.0.guy fleury iteriteka2019-04-03
| | | | | | * gnu/packages/mate.scm (mate-common): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: Add brlaser.Ricardo Wurmus2019-04-02
| | | | * gnu/packages/printers.scm (brlaser): New variable.
* gnu: wxmaxima: Update to 19.03.1.Kei Kebreau2019-04-02
| | | | * gnu/packages/maths.scm (wxmaxima): Update to 19.03.1.
* gnu: livemedia-utils: Update to 2019.03.06.Leo Famulari2019-04-02
| | | | | * gnu/packages/video.scm (livemedia-utils): Update to 2019-03-06. [source]: Remove snippet.
* gnu: Syncthing: Update to 1.1.1.Leo Famulari2019-04-02
| | | | * gnu/packages/syncthing.scm (syncthing): Update to 1.1.1.
* gnu: Go standard crypto library: Update to 0.0.0-3.b7391e9 [security fixes].Leo Famulari2019-04-02
| | | | | | | | | | | | | | | | | | | | | | | | | Fixes a vulnerability in 'golang.org/x/crypto/salsa20' where, if more than 256 GiB of keystream is generated, or if the counter otherwise grows greater than 32 bits, the amd64 implementation will first generate incorrect output, and then cycle back to previously generated keystream. https://go.googlesource.com/crypto/+/b7391e95e576cacdcdd422573063bc057239113d * gnu/packages/golang.scm (go-golang-org-x-crypto-bcrypt, go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2, go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20, go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish, go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519, go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-sha3, go-golang-org-x-crypto-ssh-terminal): Update to 0.0.0-3.b7391e9. (go-golang-org-x-crypto-blake2s)[propagated-inputs]: Add go-golang-org-x-sys-cpu. (go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2, go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20, go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish, go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ssh-terminal): Inherit from go-golang-org-x-crypto-bcrypt.
* gnu: Add go-golang-org-x-sys-cpu.Leo Famulari2019-04-02
| | | | * gnu/packages/golang.scm (go-golang-org-x-sys-cpu): New variable.
* environment: '-C' creates namespaces where the user is not root.Ludovic Courtès2019-04-02
| | | | | | | | | * guix/scripts/environment.scm (launch-environment/container): Add UID and GID. Use them in PASSWD and GROUPS. Pass them as #:guest-uid and #:guest-gid to 'call-with-container'. * tests/guix-environment-container.sh: Test the inner UID. In '--user' test, replace hard-coded 0 with 1000. * doc/guix.texi (Invoking guix environment): Adjust accordingly.
* linux-container: Make the guest UID and GID a parameter.Ludovic Courtès2019-04-02
| | | | | | | | | * gnu/build/linux-container.scm (initialize-user-namespace): Add #:guest-uid and #:guest-gid parameters and honor them. (run-container): Likewise. (call-with-container): Likewise. * tests/containers.scm ("call-with-container, user namespace, guest UID/GID"): New test.
* nls: Update 'de' translation of the manual.Ludovic Courtès2019-04-02
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* gnu: pigx-scrnaseq: Use older loompy.Ricardo Wurmus2019-04-02
| | | | | * gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace python-loompy with python-loompy-for-pigx-scrnaseq.
* gnu: Add python-loompy-for-pigx-scrnaseq.Ricardo Wurmus2019-04-02
| | | | * gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): New variable.
* gnu: pigx-chipseq: Update to 0.0.40.Ricardo Wurmus2019-04-02
| | | | * gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.40.
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