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* gnu: r-category: Update to 2.48.1.Ricardo Wurmus2019-03-20
| | | | * gnu/packages/bioinformatics.scm (r-category): Update to 2.48.1.
* gnu: r-dexseq: Update to 1.28.3.Ricardo Wurmus2019-03-20
| | | | * gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.3.
* gnu: r-annotate: Update to 1.60.1.Ricardo Wurmus2019-03-20
| | | | * gnu/packages/bioconductor.scm (r-annotate): Update to 1.60.1.
* gnu: guile-wm: Compile and use canonical directories.Ricardo Wurmus2019-03-20
| | | | | | | | Fixes <https://bugs.gnu.org/34922>. * gnu/packages/guile-wm.scm (guile-wm)[arguments]: Rename "set-go-directory" phase to "set-module-directory"; change "set-load-path" phase to wrap executable in the correct environment variables; add phase "install-go-files".
* gnu: obs: Update to 23.0.2.Tobias Geerinckx-Rice2019-03-20
| | | | * gnu/packages/video.scm (obs): Update to 23.0.2.
* gnu: perl-plack-middleware-methodoverride: Update to 0.20.Tobias Geerinckx-Rice2019-03-20
| | | | * gnu/packages/web.scm (perl-plack-middleware-methodoverride): Update to 0.20.
* gnu: perl-uri-template: Update to 0.24.Tobias Geerinckx-Rice2019-03-20
| | | | * gnu/packages/web.scm (perl-uri-template): Update to 0.24.
* gnu: mkfontscale: Update to 1.2.0.Tobias Geerinckx-Rice2019-03-20
| | | | * gnu/packages/xorg.scm (mkfontscale): Update to 1.2.0.
* gnu: xf86-video-ati: Update to 19.0.1.Tobias Geerinckx-Rice2019-03-20
| | | | * gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.1.
* gnu: xf86-video-amdgpu: Update to 19.0.1.Tobias Geerinckx-Rice2019-03-20
| | | | * gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.1.
* gnu: pencil2d: Update to 0.6.3.Tobias Geerinckx-Rice2019-03-20
| | | | * gnu/packages/animation.scm (pencil2d): Update to 0.6.3.
* gnu: python-colorspacious: Don't use unstable tarball.Tobias Geerinckx-Rice2019-03-20
| | | | | * gnu/packages/python-xyz.scm (python-colorspacious)[source]: Use GIT-FETCH and GIT-FILE-NAME.
* gnu: linux-libre: Update to 5.0.3.Mark H Weaver2019-03-20
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.3. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.30.Mark H Weaver2019-03-20
| | | | | * gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.30. (%linux-libre-4.19-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.107.Mark H Weaver2019-03-20
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.107. (%linux-libre-4.14-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.164.Mark H Weaver2019-03-20
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.164.
* services: Add nslcd-service-type.Ricardo Wurmus2019-03-20
| | | | | | | | | | | | | | | | | * gnu/services/authentication.scm (nslcd-service-type, nslcd-configuration, %nslcd-accounts): New variables. (uglify-field-name, value->string, serialize-field, serialize-list, ssl-option?, tls-reqcert-option?, deref-option?, comma-separated-list-of-strings?, serialize-ignore-users-option, log-option?, serialize-log-option, valid-map?, scope-option?, serialize-scope-option, map-entry?, list-of-map-entries?, filter-entry?, list-of-filter-entries?, serialize-filter-entry, serialize-list-of-filter-entries, serialize-map-entry, serialize-list-of-map-entries, nslcd-config-file, nslcd-etc-service, nslcd-shepherd-service, pam-ldap-pam-services, pam-ldap-pam-service, generate-nslcd-documentation): New procedures. * gnu/tests/ldap.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (LDAP Services): Document it.
* gnu: samba: Update to 4.10.0.Rutger Helling2019-03-20
| | | | | * gnu/packages/samba.scm (samba): Update to 4.10.0. [native-inputs]: Replace python-2 with python.
* gnu: xpra: Update to 2.5.Rutger Helling2019-03-20
| | | | * gnu/packages/xorg.scm (xpra): Update to 2.5.
* gnu: iproute2: Update to 5.0.0.Tobias Geerinckx-Rice2019-03-20
| | | | | * gnu/packages/linux.scm (iproute): Update to 5.0.0. [inputs, native-inputs]: Order alphabetically.
* gnu: 389-ds-base: Use more global directories.Ricardo Wurmus2019-03-20
| | | | | | | * gnu/packages/openldap.scm (389-ds-base)[arguments]: Pass "with-instconfigdir"; add phase "overwrite-default-locations" to overwrite defaults for "initconfig_dir", the certificate location, and the location of the defaults file.
* gnu: 389-ds-base: Fix tool references.Ricardo Wurmus2019-03-20
| | | | | | | * gnu/packages/openldap.scm (389-ds-base)[arguments]: Rename phase "fix-includes" to "fix-references" and fix references to certutil and c_rehash. [inputs]: Add nss:bin.
* gnu: Add adapterremoval.Ricardo Wurmus2019-03-20
| | | | * gnu/packages/bioinformatics.scm (adapterremoval): New variable.
* gnu: 389-ds-base: Set localstatedir to /var.Ricardo Wurmus2019-03-20
| | | | | * gnu/packages/openldap.scm (389-ds-base)[arguments]: Set localstatedir to /var.
* gnu: 389-ds-base: Update to 1.4.0.21.Ricardo Wurmus2019-03-20
| | | | | | * gnu/packages/openldap.scm (389-ds-base): Update to 1.4.0.21. [arguments]: Add phase "fix-includes". [inputs]: Add cracklib.
* gnu: emacs-helm-notmuch: Update to 1.2.Pierre Neidhardt2019-03-20
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm-notmuch): Update to 1.2.
* gnu: libinfinity: Update to 0.7.1.Arun Isaac2019-03-20
| | | | | * gnu/packages/gobby.scm (libinfinity): Update to 0.7.1. [inputs]: Remove gtk+-2. Add gtk+.
* gnu: icecat: Update to 60.6.0-guix1 [security-fixes].Mark H Weaver2019-03-19
| | | | | | | | | Includes fixes for CVE-2018-18506, CVE-2019-9788, CVE-2019-9790, CVE-2019-9791, CVE-2019-9792, CVE-2019-9793, CVE-2019-9794, CVE-2019-9795, CVE-2019-9796, and CVE-2019-9801. * gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.0-guix1. (icecat-source)[upstream-firefox-source]: Update hash.
* gnu: icecat: Improve computed 'icecat-source' tarball.Mark H Weaver2019-03-19
| | | | | | * gnu/packages/gnuzilla.scm (icecat-source): When packing the new IceCat tarball, set the mtime of archived files to early 1980. Remove useless 'string-append' applied to one argument.
* gnu: knot: Update to 2.8.0.Tobias Geerinckx-Rice2019-03-20
| | | | | | | | * gnu/packages/dns.scm (knot): Update to 2.8.0. [source]: Add patch. * gnu/packages/patches/knot-include-system-lmdb-header.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: cataclysm-dda: Update to 0.D.nee2019-03-19
| | | | * gnu/packages/games.scm (cataclysm-dda): Update to 0.D.
* gnu: gandi.cli: Update to 1.4.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/networking.scm (gandi.cli): Update to 1.4.
* gnu: python-ipy: Update to 1.00.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/networking.scm (python-ipy): Update to 1.00.
* gnu: google-brotli: Update to 1.0.7.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/compression.scm (google-brotli): Update to 1.0.7.
* gnu: google-brotli: Don't use unstable tarball.Tobias Geerinckx-Rice2019-03-19
| | | | | * gnu/packages/compression.scm (google-brotli)[source]: Use GIT-FETCH and GIT-FILE-NAME.
* gnu: perl-catalyst-plugin-session: Update to 0.41.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/web.scm (perl-catalyst-plugin-session): Update to 0.41.
* gnu: perl-catalyst-action-rest: Update to 1.21.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/web.scm (perl-catalyst-action-rest): Update to 1.21.
* gnu: perl-apache-logformat-compiler: Update to 0.35.Tobias Geerinckx-Rice2019-03-19
| | | | | | * gnu/packages/web.scm (perl-apache-logformat-compiler): Update to 0.35. [native-inputs]: Replace perl-module-build with perl-module-build-tiny.
* gnu: geomyidae: Update to 0.34.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/web.scm (geomyidae): Update to 0.34.
* gnu: geomyidae: Update home page.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/web.scm (geomyidae)[home-page]: Point to relevant Web content.
* gnu: geomyidae: Don't use unstable tarball.Tobias Geerinckx-Rice2019-03-19
| | | | | * gnu/packages/web.scm (geomyidae)[source]: Use GIT-FETCH and GIT-FILE-NAME.
* gnu: youtube-dl: Update to 2019.03.18.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2019.03.18.
* gnu: dcmtk: Support more.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/image-processing.scm (dcmtk)[inputs]: Add libxml2, and openssl.
* gnu: dcmtk: Update to 3.6.4.Tobias Geerinckx-Rice2019-03-19
| | | | | | * gnu/packages/image-processing.scm (dcmtk): Update to 3.6.4. [inputs]: Add libjpeg. Order alphabetically. Move doxygen… [native-inputs]: …here. Remove perl. Order alphabetically.
* gnu: dcmtk: Use HTTPS home page.Tobias Geerinckx-Rice2019-03-19
| | | | * gnu/packages/image-processing.scm (dcmtk)[home-page]: Use HTTPS.
* gnu: Add emacs-helm-wikipedia.Pierre Neidhardt2019-03-19
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm-wikipedia): New variable.
* gnu: emacs-evil-collection: Update to 20190319.Pierre Neidhardt2019-03-19
| | | | * gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190319.
* gnu: scanmem: Enable GUI frontend.Rutger Helling2019-03-19
| | | | | | | | * gnu/packages/debug.scm (scanmem): Enable GUI frontend. [arguments]: Add "--enable-gui" configure flag and 'hardcode-python, 'wrap-gameconqueror phases. [native-inputs]: Add python-wrapper, gobject-introspection, gtk+. [propogated-inputs]: Add python-pygobject.
* gnu: nanopolish: Use python-wrapper.Ricardo Wurmus2019-03-19
| | | | | * gnu/packages/bioinformatics.scm (nanopolish)[inputs]: Replace "python" with "python-wrapper" as scripts require "python" executable.
* gnu: nanopolish: Remove bundled library sources.Ricardo Wurmus2019-03-19
| | | | | * gnu/packages/bioinformatics.scm (nanopolish)[source]: Add snippet to remove bundled htslib sources.
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