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* gnu: docker: Make macros use a relative path as argument.•••* gnu/packages/docker.scm (docker)[phases]: Move implementation detail inside the SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND macros definition, so that the relative path argument can be given as a relative path. Maxim Cournoyer2019-05-05
* gnu: docker: Harmonize LookPath regexes.•••* gnu/packages/docker.scm (docker)[phases]: In the patch-paths phase, update the regexes used by SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND to match at the start of the word, like it's done later. Maxim Cournoyer2019-05-05
* gnu: docker: Cleanup extraneous comments.•••* gnu/packages/docker.scm (docker): Remove "parenthesis-balancing" comments. Maxim Cournoyer2019-05-05
* gnu: docker: Fix indentation.•••* gnu/packages/docker.scm (docker): Fix indentation using Emacs. Maxim Cournoyer2019-05-05
* services: docker: Add new fields to support proxy.•••The Docker proxy enables inter-container and outside-to-container loopback, and is required by the Docker registry server. * gnu/services/docker.scm (docker-configuration)[proxy, enable-proxy?]: Add fields. (docker-shepherd-service): Use them. (serialize-boolean): New function. Maxim Cournoyer2019-05-05
* gnu: Add docker-libnetwork-cmd-proxy.•••* gnu/packages/docker.scm (docker-libnetwork-cmd-proxy): New variable. Maxim Cournoyer2019-05-05
* gnu: Add docker-libnetwork.•••* gnu/packages/docker.scm (docker-libnetwork): New private variable. Maxim Cournoyer2019-05-05
* gnu: Add go-netlink.•••* gnu/packages/linux.scm (go-netlink): New variable. Maxim Cournoyer2019-05-05
* gnu: Add go-netns.•••* gnu/packages/networking.scm (go-netns): New variable. Maxim Cournoyer2019-05-05
* gnu: Add go-sctp.•••* gnu/packages/networking.scm (go-sctp): New variable. Maxim Cournoyer2019-05-05
* build: go-build-system: Ensure uniform unpacking directory.•••Depending on whether the source is a directory or an archive, we strip the source directory or preserve it, respectively. This change makes it so that whether the type of the source, it is unpacked at the expected location given by the IMPORT-PATH of the Go build system. * guix/build/go-build-system.scm: Add the (ice-9 ftw) module. (unpack): Add inner procedure to maybe strip the top level directory of an archive, document it and use it. Maxim Cournoyer2019-05-05
* build: go-build-system: Use WHEN for side-effect conditionals.•••* guix/build/go-build-system.scm (unpack): Replace single branch `if' by `when'. Maxim Cournoyer2019-05-05
* build: go-build-system: Re-ident.•••* guix/build/go-build-system.scm (unpack): Fix indentation. Maxim Cournoyer2019-05-05
* gnu: r-chippeakanno: Update to 3.18.0.•••* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.0. [propagated-inputs]: Add r-rtracklayer. Ricardo Wurmus2019-05-06
* gnu: r-arrmnormalization: Update to 1.24.0.•••* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.24.0. Ricardo Wurmus2019-05-06
* gnu: r-progeny: Update to 1.6.0.•••* gnu/packages/bioconductor.scm (r-progeny): Update to 1.6.0. Ricardo Wurmus2019-05-06
* gnu: r-rbowtie2: Update to 1.6.0.•••* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.6.0. Ricardo Wurmus2019-05-06
* gnu: r-zfpkm: Update to 1.6.0.•••* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.6.0. Ricardo Wurmus2019-05-06
* gnu: r-webbioc: Update to 1.56.0.•••* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.56.0. Ricardo Wurmus2019-05-06
* gnu: r-widgettools: Update to 1.62.0.•••* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.62.0. Ricardo Wurmus2019-05-06
* gnu: r-wiggleplotr: Update to 1.8.0.•••* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.8.0. Ricardo Wurmus2019-05-06
* gnu: r-wrench: Update to 1.2.0.•••* gnu/packages/bioconductor.scm (r-wrench): Update to 1.2.0. Ricardo Wurmus2019-05-06
* gnu: r-xcms: Update to 3.6.0.•••* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.0. Ricardo Wurmus2019-05-06
* gnu: r-massspecwavelet: Update to 1.50.0.•••* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.50.0. Ricardo Wurmus2019-05-06
* gnu: r-xbseq: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.16.0. Ricardo Wurmus2019-05-06
* gnu: r-roar: Update to 1.20.0.•••* gnu/packages/bioconductor.scm (r-roar): Update to 1.20.0. Ricardo Wurmus2019-05-06
* gnu: r-yarn: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-yarn): Update to 1.10.0. Ricardo Wurmus2019-05-06
* gnu: r-quantro: Update to 1.18.0.•••* gnu/packages/bioconductor.scm (r-quantro): Update to 1.18.0. Ricardo Wurmus2019-05-06
* gnu: r-yaqcaffy: Update to 1.44.0.•••* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.44.0. Ricardo Wurmus2019-05-06
* gnu: r-simpleaffy: Update to 2.60.0.•••* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.60.0. Ricardo Wurmus2019-05-06
* gnu: r-gcrma: Update to 2.56.0.•••* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.56.0. Ricardo Wurmus2019-05-06
* gnu: r-yapsa: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.10.0. Ricardo Wurmus2019-05-06
* gnu: r-somaticsignatures: Update to 2.20.0.•••* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.20.0. Ricardo Wurmus2019-05-06
* gnu: r-gtrellis: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.0. Ricardo Wurmus2019-05-06
* gnu: r-yamss: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-yamss): Update to 1.10.0. Ricardo Wurmus2019-05-06
* gnu: r-ebimage: Update to 4.26.0.•••* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.26.0. Ricardo Wurmus2019-05-06
* gnu: r-aucell: Update to 1.6.0.•••* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.0. Ricardo Wurmus2019-05-06
* gnu: r-allelicimbalance: Update to 1.22.0.•••* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.22.0. Ricardo Wurmus2019-05-06
* gnu: r-annotationtools: Update to 1.58.0.•••* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.58.0. Ricardo Wurmus2019-05-06
* gnu: r-annotationfuncs: Update to 1.34.0.•••* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.34.0. Ricardo Wurmus2019-05-06
* gnu: r-abaenrichment: Update to 1.14.0.•••* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.0. Ricardo Wurmus2019-05-06
* gnu: r-gofuncr: Update to 1.4.0.•••* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.4.0. Ricardo Wurmus2019-05-06
* gnu: r-atacseqqc: Update to 1.8.0.•••* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.0. [propagated-inputs]: Add r-edger. Ricardo Wurmus2019-05-06
* gnu: r-genomicscores: Update to 1.8.0.•••* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.0. Ricardo Wurmus2019-05-06
* gnu: r-motifstack: Update to 1.28.0.•••* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.28.0. [propagated-inputs]: Replace r-grimport with r-grimport2. Ricardo Wurmus2019-05-06
* gnu: r-motiv: Update to 1.40.0.•••* gnu/packages/bioconductor.scm (r-motiv): Update to 1.40.0. Ricardo Wurmus2019-05-06
* gnu: r-rgadem: Update to 2.31.0.•••* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.31.0. Ricardo Wurmus2019-05-06
* gnu: r-bacon: Update to 1.12.0.•••* gnu/packages/bioconductor.scm (r-bacon): Update to 1.12.0. Ricardo Wurmus2019-05-06
* gnu: r-abseqr: Update to 1.2.0.•••* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.2.0. Ricardo Wurmus2019-05-06
* gnu: r-a4: Update to 1.32.0.•••* gnu/packages/bioconductor.scm (r-a4): Update to 1.32.0. Ricardo Wurmus2019-05-06
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