| Commit message (Collapse) | Author | Age |
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* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
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* gnu/packages/bioinformatics.scm (blast+): New variable.
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* gnu/packages/code.scm (global): Update to 6.5.
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* gnu/packages/man.scm (help2man): Update to 1.47.1.
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* gnu/packages/parallel.scm (parallel): Update to 20150622.
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* gnu/packages/screen.scm (screen): Update to 4.3.1.
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* gnu/packages/texinfo.scm (texinfo-6): New variable.
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* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5.
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* doc/guix.texi (The Store Monad): Add funny quote about "running" a monadic
value.
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* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
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* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
[source]: Use github for source download. Add snippet to remove
bundled source and binaries.
[inputs]: Add openssl.
[arguments]: Copy example configuration files to out during 'install
phase.
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* gnu/packages/compression.scm (sfarkxtc): New variable.
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* gnu/packages/compression.scm (sfarklib): New variable.
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* gnu/packages/audio.scm (guitarix): New variable.
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* gnu/packages/audio.scm (ardour): Update to 4.1.
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* gnu/packages/compression.scm (libtar): New variable.
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* gnu/package/pv.scm (pv): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Alex Kost <alezost@gmail.com>
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* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
(cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
%gcc-static, %gcc-stripped): Likewise.
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* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.
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* gnu/packages/python.scm (python2-fastlmm): New variable.
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* gnu/packages/python.scm (python2-pysnptools): New variable.
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* emacs/guix-base.el (guix-define-buffer-type): Move common key bindings
from here...
(guix-root-map): ... to here. New variable.
* emacs/guix-info.el (guix-info-mode-map): Use it.
* emacs/guix-list.el (guix-list-mode-map): Use it.
* doc/emacs.texi (Emacs Keymaps): Document it.
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* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
phase.
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* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
"gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
(superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
(octave)[native-inputs]: Likewise.
(gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
"gfortran".
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* gnu/packages/gcc.scm (gcc): New variable.
* gnu/packages/gcc.scm (gfortran): New variable.
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This reverts commit e53fc0c8a, which add it wrongly to gst-plugins-base.
* gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field.
(gst-plugins-base)[native-search-paths]: Remove.
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* guix/import/pypi.scm (python->package-name, maybe-inputs, compute-inputs,
guess-requirements): New procedures.
* guix/import/pypi.scm (guix-hash-url): Now takes a filename instead of an
URL as input.
* guix/import/pypi.scm (make-pypi-sexp): Now tries to generate the inputs
automagically.
* tests/pypi.scm: Update the test.
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* guix/cpio.scm (file->cpio-header*): New procedure.
* gnu/build/linux-initrd.scm (write-cpio-archive): Add #:file->header argument
to 'cpio:write-cpio-archive'.
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* gnu/build/linux-initrd.scm (write-cpio-archive)[files]: Use 'sort' instead
of 'reverse'.
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* gnu/build/linux-initrd.scm (write-cpio-archive): Remove 'open-pipe*' and
related calls. Compute list of files in 'files' variable. Use
'cpio:write-cpio-archive'. Remove #:cpio parameter.
(build-initrd): Remove #:cpio parameter.
* gnu/system/linux-initrd.scm (expression->initrd): Likewise, and adjust
BUILDER accordingly. Add (guix cpio) to #:modules.
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* guix/cpio.scm, tests/cpio.scm: New files.
* Makefile.am (MODULES): Add guix/cpio.scm.
(SCM_TESTS): Add tests/cpio.scm.
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* tests/nar.scm (file-tree-equal?)[file=?]: Move to...
* guix/tests.scm (file=?): ... here. New procedure.
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* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0.
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* gnu/packages/julia.scm (julia)[arguments]: Use modify-phases syntax for
build phases and add missing return values.
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* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with
gfortran-4.9.
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* gnu/packages/gcc.scm (gfortran-4.9): New variable.
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* gnu/packages/bioinformatics.scm (hmmer): New variable.
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* gnu/packages/screen.scm (screen)[native-inputs]: New field.
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* gnu/packages/audio.scm (setbfree): New variable.
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* gnu/packages/gl.scm (ftgl)[inputs,propagated-inputs]: Move "freetype" from
"inputs" to "propagated-inputs".
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* gnu/packages/audio.scm (faust)[arguments]: Remove the phase
'remove-prebuilt-library...
* gnu/packages/audio.scm (faust)[origin]: ...and move it here as a snippet.
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* gnu/packages/bioinformatics.scm (star): Update to 2.4.2a.
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* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use
"setuptools" so that executables are built.
* gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock"
and "python2-pytz".
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* gnu/packages/bioinformatics.scm (idr): New variable.
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* gnu/packages/linux.scm (linux-libre): Update to 4.1.
[inputs]: Remove gcc-4.9, since it is now the default compiler.
* gnu/packages/linux-libre-i686.conf, gnu/packages/linux-libre-x86_64.conf:
Update to 4.1 configs from <https://jxself.org/git/?p=kernel-configs.git>.
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* gnu/packages/gnome.scm (gnome-klotski): New variable.
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Suggested by Alex Kost <alezost@gmail.com>.
* gnu/system.scm (emacs-site-file): Use 'geiser-install to load geiser
instead of setting 'geiser-guile-load-path' manually.
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* gnu/packages/gnome.scm (gom): New variable.
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* gnu/packages/gnome.scm (clutter-gst): New variable.
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