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* scripts: system: Add support for container network sharing.release_21Christopher Baines2018-04-29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is a port of the functionality in the Guix environment command to the guix system container command. This requires additional changes to the operating-system definitions used, in particular, networking related services may need removing if the host network is shared. * guix/scripts/system.scm (system-derivation-for-action): Add #:container-shared-network? argument. (perform-action): Add #:container-shared-network? argument. (show-help): Add "-N, --network" help information. (%options): Add network option. (process-action): Call perform-action with #:container-shared-network?. * gnu/system/linux-container.scm (%network-configuration-files): New variable. (container-script): Add support for returning a container script that shares the host network. * gnu/system.scm (essential-services): Add #:container-shared-network? argument. (operating-system-services): Add #:container-shared-network? argument. (operating-system-etc-service): Add #:container-shared-network? argument, and support for ommiting some configuration if the network is shared. (operating-system-activation-script): Add #:container-shared-network? argument, and pass this through to the operating-system-services procedure. (operating-system-boot-script): Add #:container-shared-network? argument, and pass this through to the operating-system-services procedure. (operating-system-derivation): Add the #:container-shared-network? argument, and pass this through to the operating-system-services procedure. (operating-system-profile): Add the #:container-shared-network? argument, and pass this through to the operating-system-services procedure.
* Alter the GitHub updater to use git tagsChristopher Baines2018-04-22
| | | | | Just using tags is the most consistent way of getting releases for GOV.UK related software.
* Add max_allowed_packet to the MariaDB/Mysql configurationChristopher Baines2018-04-22
| | | | | This should be done in govuk-guix, but this configuration is currently not easy.
* Export test-modulesChristopher Baines2018-04-22
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* Make test-modules a parameterChristopher Baines2018-04-22
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* services: Add elasticsearch.Christopher Baines2018-04-22
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* gnu: Add elasticsearch.Christopher Baines2018-04-22
| | | | | * gnu/packages/databases.scm (elasticsearch-1.7.2, elasticsearch): New variables.
* gnu: gcompris-qt: Update to 0.90.Efraim Flashner2018-04-22
| | | | | | | | | | * gnu/packages/education.scm (gcompris-qt): Update to 0.90. [source, home-page]: Use https. [arguments]: Add 'wrap-executable phase to declare the QT_PLUGIN_PATH and QML2_IMPORT_PATH without needing propagated inputs. [native-inputs]: Add qttools. [inputs]: Remove qt, add qtbase, qtdeclarative, qtgraphicaleffects, qtmultimedia, qtquickcontrols, qtsensors, qtsvg, qtxmlpatterns.
* gnu: freeimage: Use bundled libjxr.Efraim Flashner2018-04-22
| | | | | | | | | * gnu/packages/image.scm (freeimage)[source]: Don't delete bundled LibJXR directory. [arguments]: Modify make-flags to not include external jxrlib. [inputs]: Remove libjxr. * gnu/packages/patches/freeimage-unbundle.patch: Modify to not unbundle libjxr.
* services: Add dhcpd-service-type and <dhcpd-configuration>.Chris Marusich2018-04-21
| | | | | | | | | | | | | | | | * doc/guix.texi (Networking Services): Document it. * gnu/services/networking.scm (dhcpd-service-type): Add it. (dhcpd-configuration, dhcpd-configuration?): Add it. (dhcpd-configuration-package): Add it. (dhcpd-configuration-config-file): Add it. (dhcpd-configuration-version): Add it. (dhcpd-configuration-run-directory): Add it. (dhcpd-configuration-lease-file): Add it. (dhcpd-configuration-pid-file): Add it. (dhcpd-configuration-interfaces): Add it. * gnu/tests/networking.scm (minimal-dhcpd-v4-config-file) (dhcpd-v4-configuration, %dhcpd-os, run-dhcpd-test, %test-dhcpd): New variables.
* gnu: cran.scm: Add missing module.Efraim Flashner2018-04-22
| | | | | | This is a follow-up to 9ebfdcd36c75cfa96cd5ff4fad10ec17e4103c6d. * gnu/packages/cran.scm: Import pkg-config.
* gnu: r-httpuv: Update to 1.4.1.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/web.scm (r-httpuv): Update to 1.4.1.
* gnu: r-seurat: Update to 2.3.0.Ricardo Wurmus2018-04-21
| | | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.0. [propagated-inputs]: Add r-cluster, r-dosnow, r-fitdistrplus, r-foreach, r-lmtest, r-png, and r-rann.
* gnu: Add r-dosnow.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-dosnow): New variable.
* gnu: r-lambda-r: Update to 1.2.2.Ricardo Wurmus2018-04-21
| | | | | | | * gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.2. [arguments]: Remove. [native-inputs]: Remove. [propagated-inputs]: Add r-formatr.
* gnu: r-httpuv: Update to 1.4.0.Ricardo Wurmus2018-04-21
| | | | | * gnu/packages/web.scm (r-httpuv): Update to 1.4.0. [propagated-inputs]: Add r-bh, r-later, and r-promises.
* gnu: Add r-promises.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-promises): New variable.
* gnu: Add r-later.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-later): New variable.
* gnu: r-car: Update to 3.0-0.Ricardo Wurmus2018-04-21
| | | | | | * gnu/packages/statistics.scm (r-car): Update to 3.0-0. [propagated-inputs]: Add r-abind, r-cardata, r-lme4, r-maptools, r-nlme, and r-rio.
* gnu: Add r-maptools.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-maptools): New variable.
* gnu: Add r-rio.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-rio): New variable.
* gnu: Add r-openxlsx.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-openxlsx): New variable.
* gnu: r-ggridges: Update to 0.5.0.Ricardo Wurmus2018-04-21
| | | | | * gnu/packages/cran.scm (r-ggridges): Update to 0.5.0. [propagated-inputs]: Add r-withr.
* gnu: r-ddalpha: Update to 1.3.2.Ricardo Wurmus2018-04-21
| | | | | * gnu/packages/cran.scm (r-ddalpha): Update to 1.3.2. [propagated-inputs]: Add r-geometry.
* gnu: Add r-geometry.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-geometry): New variable.
* gnu: Add r-magic.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-magic): New variable.
* gnu: Add r-cardata.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/statistics.scm (r-cardata): New variable.
* gnu: r-gsubfn: Update to 0.7.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-gsubfn): Update to 0.7.
* gnu: r-psych: Update to 1.8.3.3.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-psych): Update to 1.8.3.3.
* gnu: r-quantmod: Update to 0.4-13.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-quantmod): Update to 0.4-13.
* gnu: r-tinytex: Update to 0.5.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-tinytex): Update to 0.5.
* gnu: r-xts: Update to 0.10-2.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-xts): Update to 0.10-2.
* gnu: r-stringdist: Update to 0.9.4.7.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-stringdist): Update to 0.9.4.7.
* gnu: r-prodlim: Update to 2018.04.18.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-prodlim): Update to 2018.04.18.
* gnu: r-lava: Update to 1.6.1.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-lava): Update to 1.6.1.
* gnu: r-rmpi: Update to 0.6-7.Ricardo Wurmus2018-04-21
| | | | | * gnu/packages/cran.scm (r-rmpi): Update to 0.6-7. [native-inputs]: Add pkg-config.
* gnu: r-globaloptions: Update to 0.0.13.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-globaloptions): Update to 0.0.13.
* gnu: r-bindrcpp: Update to 0.2.2.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-bindrcpp): Update to 0.2.2.
* gnu: r-bindr: Update to 0.1.1.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-bindr): Update to 0.1.1.
* gnu: r-rcpp: Update to 0.12.16.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-rcpp): Update to 0.12.16.
* gnu: r-plogr: Update to 0.2.0.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-plogr): Update to 0.2.0.
* gnu: r-readxl: Update to 1.1.0.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/cran.scm (r-readxl): Update to 1.1.0.
* gnu: r-selectr: Update to 0.4-1.Ricardo Wurmus2018-04-21
| | | | | * gnu/packages/cran.scm (r-selectr): Update to 0.4-1. [propagated-inputs]: Add r-r6.
* gnu: r-scran: Update to 1.6.9.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.9.
* gnu: r-hitc: Update to 1.22.1.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/bioinformatics.scm (r-hitc): Update to 1.22.1.
* gnu: r-ldblock: Update to 1.8.1.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.8.1.
* gnu: r-erma: Update to 0.10.1.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/bioinformatics.scm (r-erma): Update to 0.10.1.
* gnu: r-gprofiler: Update to 0.6.6.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.6.
* gnu: r-ggbio: Update to 1.26.1.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.26.1.
* gnu: r-genomicalignments: Update to 1.14.2.Ricardo Wurmus2018-04-21
| | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.2.
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