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* bootstrap: Switch to official bootstrap urls.Jan Nieuwenhuizen2018-12-11
| | | | | | | | | | | | Built with 4ae7dc7b9af64794081b1913740b97acd89c91bc gnu: Remove duplicate linux-libre-headers package from bootstrap inputs. * gnu/packages/bootstrap.scm (%bootstrap-linux-libre-headers): Switch to official bootstrap urls. (%bootstrap-mescc-tools): Likewise. (%bootstrap-mes): Likewise.
* bootstrap: mes-boot: Use mes-boot0 version.Jan Nieuwenhuizen2018-12-11
| | | | * gnu/packages/commencement.scm (mes-boot): Use mes-boot0 version.
* gnu: python: Update to 3.7.1.Christopher Baines2018-12-09
| | | | | | | Remove the replacement, as version 3.7.1 includes the fix for this issue. * gnu/packages/python.scm (python-3.7): Update to 3.7.1. (python-3/fixed): Remove this.
* build-system: python: Do not double wrap executables.Arun Isaac2018-11-25
| | | | | | * guix/build/python-build-system.scm (wrap): Only wrap executables that have not already been wrapped. * guix/build/utils.scm (wrapper?): New function.
* gnu: Remove duplicate linux-libre-headers package from bootstrap inputs.Marius Bakke2018-11-24
| | | | | | | GLIBC-FINAL already propagates linux-libre-headers, so drop the bootstrap input. * gnu/packages/commencement.scm (%boot2-inputs): Remove %BOOTSTRAP-LINUX-LIBRE-HEADERS.
* gnu: gcc-boot0: Improve gcc-wrapper workarounds.Marius Bakke2018-11-24
| | | | | * gnu/packages/commencement.scm (gcc-boot0)[arguments]: Adjust the libcc1 build scripts instead of copying libcc1.so from %BOOT0-INPUTS.
* gnu: libstdc++-boot0: Improve gcc-wrapper workaround.Marius Bakke2018-11-24
| | | | | * gnu/packages/commencement.scm (libstdc++-boot0): Adjust the configure script instead of copying libstdc++.so from %BOOT0-INPUTS.
* gnu: Remove gcc-for-libstdc++.Marius Bakke2018-11-24
| | | | | * gnu/packages/commencement.scm (gcc-for-libstdc++): Remove variable. (libstdc++-boot0): Inherit GCC-4.9 instead.
* doc: Update for bootstrap-mescc-tools change.Jan Nieuwenhuizen2018-11-24
| | | | | | * doc/guix.texi (Reduced Binary Seed Bootstrap): Update for bootstrap-mescc-tools change. * doc/images/gcc-mesboot-bag-graph.dot: Regenerate.
* bootstrap: Force i686-linux for bootstrap-tarballs.Jan Nieuwenhuizen2018-11-24
| | | | | | | | * gnu/packages/make-bootstrap.scm (%mescc-tools-static): Force i686-linux for bootstrap-tarballs. (%mes-minimal): Likewise. Remove i686-linux cross-compiler dependency. * gnu/packages/commencement.scm (mes-boot): Support strict i686-linux build on x86_64.
* bootstrap: Update %bootstrap-tarballs.Jan Nieuwenhuizen2018-11-18
| | | | | | * gnu/packages/make-bootstrap.scm (%bootstrap-tarballs): Update to use %mescc-tools-bootstrap-tarball, %mes-bootstrap-tarball, %linux-libre-headers-bootstrap-tarball.
* bootstrap: Replace %mescc-tools-seed with %bootstrap-mescc-tools.Jan Nieuwenhuizen2018-11-18
| | | | | | | | * gnu/packages/bootstrap.scm (%mescc-tools-seed): Remove. (%bootstrap-inputs): Replace %mescc-tools-seed with %bootstrap-mescc-tools. * gnu/packages/commencement.scm (mes-boot): Likewise. (tcc-boot0): Likewise. (mescc-tools-boot): Remove.
* bootstrap: Update %bootstrap-mes.Jan Nieuwenhuizen2018-11-18
| | | | | | | | | Built with b00a95be28b7c663cf8f82ef03b385d32ca51ae9 bootstrap: Add %bootstrap-mescc-tools. * gnu/packages/bootstrap.scm (%bootstrap-mes): Update.
* bootstrap: Add %bootstrap-mescc-tools.Jan Nieuwenhuizen2018-11-18
| | | | | | | | Built with a647da364ac494b409114a52e48dc0dab03cbf4f bootstrap: Add %mes-minimal. * gnu/packages/bootstrap.scm (%bootstrap-mescc-tools): New variable.
* bootstrap: Add %mes-minimal.Jan Nieuwenhuizen2018-11-18
| | | | | | | | | | %mes-minimal introduces a Mes for bootstrap that does not depend on graphviz, perl, and texinfo and thus does not build any documentation. This removes ~100 dependencies from bootstrap-tarballs. * gnu/packages/make-bootstrap.scm (%mes-minimal): New variable. (%mes-minmal-stripped): Rename from %mes-stripped. (%mes-bootstrap-tarball): Update.
* gnu: libgcrypt: Update to 1.8.4.Björn Höfling2018-11-18
| | | | | | | | | | Update libgcrypt and remove reproducibility patch, it is now built-in. See https://dev.gnupg.org/T4102 * gnu/packages/gnupg.scm (libgcrypt): Update to 1.8.4. [source]: Remove patch. * gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch: Delete file. * gnu/local.mk(dist_patch_DATA): Remove it.
* bootstrap: Add mescc-tools-static, mescc-tools-static-tarball.Jan Nieuwenhuizen2018-11-18
| | | | | * gnu/packages/make-bootstrap.scm (%mescc-tools-static, %mescc-tools-bootstrap-tarball): New variable.
* python: Honor '--cores=...' in tests.Eric Bavier2018-11-17
| | | | * gnu/packages/python.scm (python-2.7)[arguments]: Add #:make-flags.
* gnu: glibc: Update supported locale patch description.Mathieu Othacehe2018-11-07
| | | | gnu/packages/patches/glibc-supported-locales.patch: Update description.
* gnu: glibc: Export supported locales.Mathieu Othacehe2018-11-07
| | | | | | | | | | | Debian and Archlinux (at least) force the installation of the localedata/SUPPORTED file of the glibc. This file lists all the supported locales of the glibc. * gnu/packages/patches/glibc-supported-locales.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/base.scm (glibc/linux): Add the previous patch, (glibc-2.28): ditto.
* doc: Fix typo.Jan Nieuwenhuizen2018-10-23
| | | | * doc/guix.texi (Reduced Binary Seed Bootstrap): Fix typo.
* doc: Update Preparing to Use the Bootstrap Binaries.Jan Nieuwenhuizen2018-10-23
| | | | | | | * doc/guix.texi (Preparing to Use the Bootstrap Binaries): Mention bootstrap-mes alongside bootstrap-gcc. (Reducing the Set of Bootstrap Binaries): Mention the Reduced Binary Seed bootstrap, MesCC-Tools and Mes.
* bootstrap: Build with %bootstrap-mes.Jan Nieuwenhuizen2018-10-23
| | | | | | | * gnu/packages/bootstrap.scm (%tinycc-seed): Remove. (%bootstrap-inputs): Use %bootstrap-mes instead of %mes-seed and %tinycc-seed. * gnu/packages/commencement.scm (mescc-tools-boot, mes-boot, tcc-boot0): Build with %bootstrap-mes instead of %mes-seed and %tinycc-seed.
* gnu: mescc-tools: Update to 0.5.2-0.bb062b0d.Jan Nieuwenhuizen2018-10-23
| | | | | | * gnu/packages/mes.scm (mescc-tools): Update to 0.5.2-0.bb062b0d. mescc * gnu/packages/commencement.scm (mescc-tools-boot): Stay at 0.5.2
* bootstrap: Add %bootstrap-mes.Jan Nieuwenhuizen2018-10-23
| | | | | | | | | Built with 668ffe1e4e67e22268c9565993c6d9d7a86ae72a bootstrap: Move use-modules to top of builder. Todo: host these on ftp.gnu.org/pub/guix/... * gnu/packages/bootstrap.scm (%bootstrap-mes): New variable.
* bootstrap: Move use-modules to top of builder.Jan Nieuwenhuizen2018-10-21
| | | | | | * gnu/packages/bootstrap.scm (package-from-tarball): Move use-modules to top of builder. (%bootstrap-glibc): Likewise. (%bootstrap-gcc): Likewise.
* bootstrap: Add %mes-stripped, %mes-bootstrap-tarball.Jan Nieuwenhuizen2018-10-21
| | | | | | | * gnu/packages/make-bootstrap.scm (%mes-stripped): New variable. (%mes-bootstrap-tarball): New variable. * gnu/packages/mes.scm: Oops, remove stray (gnu packages commencement) module include.
* gnu: mes: Update to 0.18.0-08f04f55.Jan Nieuwenhuizen2018-10-21
| | | | | | | | | | | | | | | | | | | This update is a preparation for the %bootstrap-mes package; due to some small problems it fails to build with plain mes-0.18. mes-boot0 stays at 0.18 only to avoid another rebuild world. %bootstrap-mes brings the building and packaging the Mes bootstrap seeds from manual operation into Guix. We will bump mes and mes-boot0 to a future 0.18.1 or 0.19 and regenerate %bootstrap-mes in a nex iteration. 08f04f55 build: Oops, remove stray lib/linux/x86_64-mes/crt1. 33f37f27 build: x86_64 bootstrap build fixes and workaround. 4ae2a111 doc: Release update. 5277669b mescc: Oops, delete wrong line of assembly. 44cc97a8 admin: Release update. * gnu/packages/mes.scm (mes): Update to 0.18.0-08f04f55. * gnu/packages/commencement.scm (mes-boot0): Stay at 0.18.0.
* doc: Move `Reduced Binary Seed Bootstrap' into `Bootstrapping'.Jan Nieuwenhuizen2018-10-21
| | | | * doc/guix.texi (Reduced Binary Seed Bootstrap):
* Merge branch 'core-updates' into core-updates-nextJan Nieuwenhuizen2018-10-21
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| * Merge branch 'master' into core-updatesMarius Bakke2018-10-21
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| | * gnu: rng-tools: Update to 6.6.Marius Bakke2018-10-21
| | | | | | | | | | | | * gnu/packages/linux.scm (rng-tools): Update to 6.6.
| | * gnu: fluidsynth: Update to 2.0.1.Marius Bakke2018-10-21
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/audio.scm (fluidsynth): Update to 2.0.1. (fluidsynth-1): New public variable. * gnu/packages/games.scm (gzdoom)[inputs]: Change FLUIDSYNTH to FLUIDSYNTH-1. * gnu/packages/music.scm (lmms)[inputs]: Likewise.
| | * gnu: libgxps: Update to 0.3.0.Marius Bakke2018-10-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/gnome.scm (libgxps): Update to 0.3.0. [source](patches): Remove. [build-system]: Switch to MESON-BUILD-SYSTEM. [inputs]: Change LIBJPEG to LIBJPEG-TURBO. * gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
| | * gnu: libgxps: Propagate required inputs.Marius Bakke2018-10-21
| | | | | | | | | | | | | | | * gnu/packages/gnome.scm (libgxps)[inputs]: Move CAIRO, GLIB and LIBARCHIVE ... [propagated-inputs]: ... here. New field.
| | * gnu: re2: Update to 2018-10-01.Marius Bakke2018-10-21
| | | | | | | | | | | | * gnu/packages/regex.scm (re2): Update to 2018-10-01.
| | * gnu: libgphoto2: Update to 2.5.19.Marius Bakke2018-10-21
| | | | | | | | | | | | * gnu/packages/photo.scm (libgphoto2): Update to 2.5.19.
| | * gnu: appstream-glib: Update to 0.7.14.Marius Bakke2018-10-21
| | | | | | | | | | | | * gnu/packages/glib.scm (appstream-glib): Update to 0.7.14.
| | * gnu: openal: Update to 1.19.1.Marius Bakke2018-10-21
| | | | | | | | | | | | * gnu/packages/audio.scm (openal): Update to 1.19.1.
| | * gnu: kodi: Disable version checker.Efraim Flashner2018-10-21
| | | | | | | | | | | | | | | | | | | | | Fixes bug#32997. * gnu/packages/kodi.scm (kodi)[arguments]: Add substitution to remove the version checking configuration option.
| | * gnu: python2-dendropy: Disable failing test.Ben Woodcroft2018-10-21
| | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (python2-dendropy)[arguments]: Disable failing test.
| | * gnu: bowtie: Update to 2.3.4.3.Ricardo Wurmus2018-10-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (bowtie): Update to 2.3.4.3. [source]: Fetch from git. [inputs]: Replace python-2 with python-wrapper; move perl, perl-clone, perl-test-deep, and perl-test-simple from here... [native-inputs]: ...to here. [arguments]: Simplify check phase.
| | * gnu: blast+: Use INVOKE and return #T unconditionally.Ricardo Wurmus2018-10-20
| | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (blast+)[arguments]: Use INVOKE and return #T unconditionally.
| | * gnu: bedops: Update to 2.4.35.Ricardo Wurmus2018-10-20
| | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (bedops): Update to 2.4.35. [source]: Fetch from git.
| | * gnu: bedops: Use INVOKE.Ricardo Wurmus2018-10-20
| | | | | | | | | | | | * gnu/packages/bioinformatics.scm (bedops)[arguments]: Use INVOKE.
| | * gnu: bamm: Fetch from git and use INVOKE.Ricardo Wurmus2018-10-20
| | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (bamm)[source]: Fetch from git. [arguments]: Use INVOKE and return #T unconditionally.
| | * gnu: aragorn: Use invoke and simplify.Ricardo Wurmus2018-10-20
| | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (aragorn)[arguments]: Use INVOKE in build phase; simplify install phase.
| | * gnu: clipper: Update to 1.2.1.Ricardo Wurmus2018-10-20
| | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (clipper): Update to 1.2.1. [source]: Fetch from git. [arguments]: Add fix-typo phase.
| | * gnu: python-pybedtools: Update to 0.7.10.Ricardo Wurmus2018-10-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (python2-pybedtools): Update to 0.7.10. [arguments]: Disable broken tests. [propagated-inputs]: Replace bedtools with bedtools-2.26; add python-matplotlib, python-pysam, and python-pyyaml. [native-inputs]: Remove python-pyyaml; add kentutils, python-numpy, python-pandas, and python-six. (python-pybedtools): New variable.
| | * gnu: Add bedtools-2.26.Ricardo Wurmus2018-10-20
| | | | | | | | | | | | * gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
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