| Commit message (Expand) | Author | Age |
|---|
| ... | |
| * | gnu: r-ipred: Update to 0.9-8.•••* gnu/packages/cran.scm (r-ipred): Update to 0.9-8.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-ffbase: Update to 0.12.7.•••* gnu/packages/cran.scm (r-ffbase): Update to 0.12.7.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-pkgload: Update to 1.0.2.•••* gnu/packages/cran.scm (r-pkgload): Update to 1.0.2.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-ps: Update to 1.2.1.•••* gnu/packages/cran.scm (r-ps): Update to 1.2.1.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-rgraphviz: Update to 2.26.0.•••* gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: Add hdf5-1.10.•••* gnu/packages/maths.scm (hdf5-1.10): New variable.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-regioner: Update to 1.14.0.•••* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-ruvseq: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: Add r-biocneighbors.•••* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-dnabarcodes: Update to 1.12.0.•••* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.12.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-inspect: Update to 1.12.0.•••* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-rots: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-glimma: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-goseq: Update to 1.34.0.•••* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-ctc: Update to 1.56.0.•••* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-genomicinteractions: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-interactionset: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-riboseqr: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-riboprofiling: Update to 1.12.0.•••* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-ripseeker: Update to 1.22.0.•••* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-chipcomp: Update to 1.12.0.•••* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-bayseq: Update to 2.16.0.•••* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-chippeakanno: Update to 3.16.0.•••* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-graph: Update to 1.60.0.•••* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-multtest: Update to 2.38.0.•••* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-qdnaseq: Update to 1.18.0.•••* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-cghcall: Update to 2.44.0.•••* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-cghbase: Update to 1.42.0.•••* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-marray: Update to 1.60.0.•••* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-diffbind: Update to 2.10.0.•••* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-hpar: Update to 1.24.0.•••* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: Add r-biocmanager.•••* gnu/packages/cran.scm (r-biocmanager): New variable.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: Add r-ncdf4.•••* gnu/packages/cran.scm (r-ncdf4): New variable.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: Add r-rcppannoy.•••* gnu/packages/cran.scm (r-rcppannoy): New variable.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: slang: Use a correct location for terminfo dirs.•••As termcap is disabled and no terminfo directory is given, slang is not able
to query terminal capabilities. Specifying a correct path for terminfo will
automatically disable termcap support in the configuration.
* gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling
termcap.
[arguments]: Set MISC_TERMINFO_DIRS to a correct location.
| Mathieu Othacehe | 2018-11-07 |
| * | gnu: terminals: Change libtsm and kmscon repositories.•••Those two packages (from the same author) are no longer maintained and do not
even compile. Switch to a fork that is maintained even if it does not have any
release yet.
* gnu/packages/terminals.scm (libtsm)[origin]: Use
"https://github.com/Aetf/libtsm" as new origin and switch to git-fetch method.
(kmscon)[origin]: Use "https://github.com/Aetf/kmscon" as new origin and
switch to git-fetch method.
| Mathieu Othacehe | 2018-11-07 |
| * | services: kmscon: Add an auto-login option.•••Add an auto-login option that behaves as the one of mingetty-service.
* gnu/services/base.scm (kmscon-configuration)[auto-login]: New field.
(kmscon-service-type): Pass it to kmscon command.
* doc/guix.texi (Base Services): Document it.
| Mathieu Othacehe | 2018-11-07 |
| * | services: kmscon: Do not switch to vt at start.•••* gnu/services/base.scm (kmscon-service-type): Add "--no-switchvt" to kmscon
command.
| Mathieu Othacehe | 2018-11-07 |
| * | gnu: Add guile-newt.•••* gnu/packages/guile.scm (guile-newt): New variable.
| Mathieu Othacehe | 2018-11-07 |
| * | gnu: kodi: Fix typo.•••This is a follow-up to 2c17bd7b2955beef4130d11b33e07e4fb3b234dc.
* gnu/packages/kodi.scm (kodi)[arguments]: Remove unwanted symbols.
| Efraim Flashner | 2018-11-07 |
| * | gnu: LibreOffice: Update to 6.1.3.2.•••* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2.
| Leo Famulari | 2018-11-06 |
| * | gnu: GnuPG: Update to 2.2.11.•••* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11.
| Leo Famulari | 2018-11-06 |
| * | pack: Add test for '--relocatable'.•••* tests/guix-pack-relocatable.sh: New file.
* Makefile.am (SH_TESTS): Add it.
| Ludovic Courtès | 2018-11-06 |
| * | store-copy: Canonicalize the mtime and permissions of the store copy.•••Fixes a bug whereby directories in the output of 'guix pack -f tarball'
would not be read-only.
* guix/build/store-copy.scm (reset-permissions): New procedure.
(populate-store): Pass #:keep-mtime? #t to 'copy-recursively'. Call
'reset-permissions'.
* tests/pack.scm ("self-contained-tarball"): In CHECK, define
'canonical?' and use it to check that every file has an mtime of 1 and
is read-only.
* tests/guix-pack.sh: Invoke "chmod -Rf +w" before "rm -rf" in trap.
| Ludovic Courtès | 2018-11-06 |
| * | pack: Add test for 'self-contained-tarball' with localstatedir.•••* tests/pack.scm ("self-contained-tarball + localstatedir"): New test.
| Ludovic Courtès | 2018-11-06 |
| * | pack: Squashfs backend now honors '--localstatedir'.•••* guix/scripts/pack.scm (squashfs-image)[database]: New variable.
[build]: Add (gnu build install) to the closure. Call
'install-database-and-gc-roots' when DATABASE is true, and invoke
mksquashfs once more.
* tests/pack.scm ("squashfs-image + localstatedir"): New test.
| Ludovic Courtès | 2018-11-06 |
| * | pack: Docker backend now honors '--localstatedir'.•••* guix/docker.scm (build-docker-image): Add #:database parameter.
Create /var/guix/db, /var/guix/profiles, etc. when DATABASE is true.
* guix/scripts/pack.scm (docker-image): Export. Remove #:deduplicate?
parameter. Define 'database' and pass it to 'docker-image'.
* tests/pack.scm (test-assertm): Recompile the derivation of
%BOOTSTRAP-GUILE.
("docker-image + localstatedir"): New test.
| Ludovic Courtès | 2018-11-06 |
| * | install: Add 'install-database-and-gc-roots'.•••* gnu/build/install.scm (%root-profile): New variable.
(install-database-and-gc-roots): New procedure.
(populate-single-profile-directory): Replace inline code with a call to
'install-database-and-gc-roots'.
| Ludovic Courtès | 2018-11-06 |
| * | pack: Import (guix store database) only when '--localstatedir' is passed.•••This is another way to address <https://bugs.gnu.org/32184>, which was
previously addressed in commit 19c924af4f3726688ca155a905ebf1cb9acdfca2.
* gnu/build/install.scm (register-closure): Move to...
* gnu/build/vm.scm (register-closure): ... here. New procedure.
* guix/scripts/pack.scm (self-contained-tarball)[build]: Remove
now unneeded 'with-extensions' form and custom (guix config) module.
* tests/guix-pack.sh: Revert the strategy from
commit 19c924af4f3726688ca155a905ebf1cb9acdfca2.
* tests/pack.scm ("self-contained-tarball"): Likewise.
| Ludovic Courtès | 2018-11-06 |
| * | pack: Move store database creation to a separate derivation.•••* guix/scripts/pack.scm (store-database): New procedure.
(self-contained-tarball): Use it when LOCALSTATEDIR? is true.
Remove 'schema' and add 'database'.
[build]: Pass DATABASE to 'populate-single-profile-directory'.
(squashfs-image): Remove #:deduplicate? parameter.
[build]: Remove (gnu build install) and (guix config) from the imported
modules. Remove 'with-extensions'.
* gnu/build/install.scm (populate-single-profile-directory): Remove
#:deduplicate?, #:register?, and #:schema; add #:database. Remove call
to 'register-closure' and simply copy DATABASE instead.
| Ludovic Courtès | 2018-11-06 |