diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/compression.scm | 20 | ||||
| -rw-r--r-- | gnu/packages/python.scm | 38 |
2 files changed, 58 insertions, 0 deletions
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm index 7c22300dd1..f2736b9eb3 100644 --- a/gnu/packages/compression.scm +++ b/gnu/packages/compression.scm @@ -70,6 +70,26 @@ independent of the input data and can be reduced, if necessary, at some cost in compression.") (license license:zlib))) +(define-public fastjar + (package + (name "fastjar") + (version "0.98") + (source (origin + (method url-fetch) + (uri (string-append "mirror://savannah/fastjar/fastjar-" + version ".tar.gz")) + (sha256 + (base32 + "0iginbz2m15hcsa3x4y7v3mhk54gr1r7m3ghx0pg4n46vv2snmpi")))) + (build-system gnu-build-system) + (inputs `(("zlib" ,zlib))) + (home-page "http://savannah.nongnu.org/projects/fastjar") + (synopsis "Replacement for Sun's 'jar' utility") + (description + "FastJar is an attempt to create a much faster replacement for Sun's 'jar' +utility. Instead of being written in Java, FastJar is written in C.") + (license license:gpl2+))) + (define-public gzip (package (name "gzip") diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index f81ab695af..adb84fc5b7 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -37,6 +37,7 @@ #:use-module (gnu packages openssl) #:use-module (gnu packages elf) #:use-module (gnu packages maths) + #:use-module (gnu packages ncurses) #:use-module (gnu packages gcc) #:use-module (gnu packages pkg-config) #:use-module (gnu packages databases) @@ -617,6 +618,43 @@ get the local timezone information, unless you know the zoneinfo name, and under several distributions that's hard or impossible to figure out.") (license cc0))) +(define-public python-pysam + (package + (name "python-pysam") + (version "0.8.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/p/pysam/pysam-" + version ".tar.gz")) + (sha256 + (base32 + "1fb6i6hbpzxaxb62kyyp5alaidwhj40f7c6gwbhr6njzlqd5l459")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; tests are excluded in the manifest + #:phases + (alist-cons-before + 'build 'set-flags + (lambda _ + (setenv "LDFLAGS" "-lncurses") + (setenv "CFLAGS" "-D_CURSES_LIB=1")) + %standard-phases))) + (inputs + `(("python-cython" ,python-cython) + ("python-setuptools" ,python-setuptools) + ("ncurses" ,ncurses) + ("zlib" ,zlib))) + (home-page "https://github.com/pysam-developers/pysam") + (synopsis "Python bindings to the SAMtools C API") + (description + "Pysam is a Python module for reading and manipulating files in the +SAM/BAM format. Pysam is a lightweight wrapper of the SAMtools C API. It +also includes an interface for tabix.") + (license expat))) + +(define-public python2-pysam + (package-with-python2 python-pysam)) (define-public python2-pysqlite (package |