diff options
Diffstat (limited to 'gnu/packages')
35 files changed, 626 insertions, 293 deletions
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index 0af43a6c0b..02d9baf493 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -661,14 +661,14 @@ network statistics collection, security monitoring, network debugging, etc.") (define-public tcpdump (package (name "tcpdump") - (version "4.9.0") + (version "4.9.1") (source (origin (method url-fetch) (uri (string-append "http://www.tcpdump.org/release/tcpdump-" version ".tar.gz")) (sha256 (base32 - "0pjsxsy8l71i813sa934cwf1ryp9xbr7nxwsvnzavjdirchq3sga")))) + "1wyqbg7bkmgqyslf1ns0xx9fcqi66hvcfm9nf77rl15jvvs8qi7r")))) (build-system gnu-build-system) (inputs `(("libpcap" ,libpcap) ("openssl" ,openssl))) @@ -2169,7 +2169,7 @@ tool for remote execution and deployment.") (("\"/etc/neofetch") (string-append "\"" out "/etc/neofetch")) (("\"/usr/share/neofetch") - (string-append "\"" out "/usr/share/neofetch")))) + (string-append "\"" out "/share/neofetch")))) #t)) (delete 'configure)))) (home-page "https://github.com/dylanaraps/neofetch") @@ -2184,7 +2184,7 @@ you are running, what theme or icon set you are using, etc.") (define-public nnn (package (name "nnn") - (version "1.2") + (version "1.3") (source (origin (method url-fetch) (uri (string-append "https://github.com/jarun/nnn/" @@ -2192,7 +2192,7 @@ you are running, what theme or icon set you are using, etc.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "08l0wcwwsl5kix9kg3h51s2afzg97y1rjjfi0ijs294kz57g1cfq")))) + "0sivgcmg3hihz15v2wgbxnd0icn06pyvvqdqh8x0mwkhvm434fpb")))) (build-system gnu-build-system) (inputs `(("ncurses" ,ncurses) ("readline" ,readline))) diff --git a/gnu/packages/certs.scm b/gnu/packages/certs.scm index 2441de6631..c7242dea92 100644 --- a/gnu/packages/certs.scm +++ b/gnu/packages/certs.scm @@ -74,7 +74,7 @@ (define-public nss-certs (package (name "nss-certs") - (version "3.31") + (version "3.32") (source (origin (method url-fetch) (uri (let ((version-with-underscores @@ -85,7 +85,7 @@ "nss-" version ".tar.gz"))) (sha256 (base32 - "0pd643a8ns7q5az5ai3ascrw666i2kbfiyy1c9hlhw9jd8jn21g9")))) + "0dfkgvah0ji8b8lpxyy2w0b3lyz5ldmryii4z7j2bfwnrj0z7iim")))) (build-system gnu-build-system) (outputs '("out")) (native-inputs diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm index 6ed4519344..7237931b7d 100644 --- a/gnu/packages/compression.scm +++ b/gnu/packages/compression.scm @@ -474,6 +474,36 @@ more than bzip2, which makes it well suited for software distribution and data archiving. Lzip is a clean implementation of the LZMA algorithm.") (license license:gpl3+))) +(define-public lziprecover + (package + (name "lziprecover") + (version "1.19") + (source (origin + (method url-fetch) + (uri (string-append "mirror://savannah/lzip/" name "/" + name "-" version ".tar.gz")) + (sha256 + (base32 + "0z5fbkm0qprypjf7kxkqganniibj0zml13zvfkrchnjafcmmzyld")))) + (build-system gnu-build-system) + (home-page "http://www.nongnu.org/lzip/lziprecover.html") + (synopsis "Recover and decompress data from damaged lzip files") + (description + "Lziprecover is a data recovery tool and decompressor for files in the lzip +compressed data format (.lz). It can test the integrity of lzip files, extract +data from damaged ones, and repair most files with small errors (up to one +single-byte error per member) entirely. + +Lziprecover is not a replacement for regular backups, but a last line of defence +when even the backups are corrupt. It can recover files by merging the good +parts of two or more damaged copies, such as can be easily produced by running +@command{ddrescue} on a failing device. + +This package also includes @command{unzcrash}, a tool to test the robustness of +decompressors when faced with corrupted input.") + (license (list license:bsd-2 ; arg_parser.{cc,h} + license:gpl2+)))) ; everything else + (define-public sharutils (package (name "sharutils") diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm index af06ec43f0..aba8ce7eb1 100644 --- a/gnu/packages/cups.scm +++ b/gnu/packages/cups.scm @@ -339,14 +339,14 @@ device-specific programs to convert and print many types of files.") (define-public hplip (package (name "hplip") - (version "3.17.6") + (version "3.17.7") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/hplip/hplip/" version "/hplip-" version ".tar.gz")) (sha256 (base32 - "0zhhnp3ksd9i2maaqrsjn4p3y7im3llgylp2y8qgmqypm8s7ha40")))) + "03a0vkbrzvgj15il9rvr93kf5pc706gxcjk6akbkzds0zmdbsxrm")))) (build-system gnu-build-system) (home-page "http://hplipopensource.com/") (synopsis "HP Printer Drivers") diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index f5f3af2c05..994b8499ff 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -1015,7 +1015,8 @@ columns, primary keys, unique constraints and relationships.") "DBD-mysql-" version ".tar.gz")) (sha256 (base32 - "16bg7l28n65ngi1abjxvwk906a80i2vd5vzjn812dx8phdg8d7v2")))) + "16bg7l28n65ngi1abjxvwk906a80i2vd5vzjn812dx8phdg8d7v2")) + (patches (search-patches "perl-dbd-mysql-CVE-2017-10788.patch")))) (build-system perl-build-system) ;; Tests require running MySQL server (arguments `(#:tests? #f)) diff --git a/gnu/packages/disk.scm b/gnu/packages/disk.scm index a087141a87..0a6e2c9e1f 100644 --- a/gnu/packages/disk.scm +++ b/gnu/packages/disk.scm @@ -90,7 +90,7 @@ tables. It includes a library and command-line utility.") (define-public fdisk (package (name "fdisk") - (version "2.0.0a") + (version "2.0.0a1") (source (origin (method url-fetch) @@ -98,13 +98,27 @@ tables. It includes a library and command-line utility.") version ".tar.gz")) (sha256 (base32 - "04nd7civ561x2lwcmxhsqbprml3178jfc58fy1v7hzqg5k4nbhy3")))) + "1d8za79kw8ihnp2br084rgyjv9whkwp7957rzw815i0izx6xhqy9")))) (build-system gnu-build-system) (inputs `(("gettext" ,gettext-minimal) ("guile" ,guile-1.8) ("util-linux" ,util-linux) ("parted" ,parted))) + ;; The build neglects to look for its own headers in its own tree. A next + ;; release should fix this, but may never come: GNU fdisk looks abandoned. + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'skip-broken-header-probes + (lambda _ + (substitute* "backend/configure" + (("gnufdisk-common.h .*") "\n")) + #t))) + #:make-flags (list (string-append "CPPFLAGS=" + " -I../common/include " + " -I../debug/include " + " -I../exception/include")))) (home-page "https://www.gnu.org/software/fdisk/") (synopsis "Low-level disk partitioning and formatting") (description @@ -245,7 +259,7 @@ and a @command{fsck.vfat} compatibility symlink for use in an initrd.") (define-public sdparm (package (name "sdparm") - (version "1.09") + (version "1.10") (source (origin (method url-fetch) @@ -253,7 +267,7 @@ and a @command{fsck.vfat} compatibility symlink for use in an initrd.") name "-" version ".tar.xz")) (sha256 (base32 - "0jakqyjwi72zqjzss04bally0xl0lc4710mx8da08vpmir1hfphg")))) + "1jjq3lzgfy4r76rc26q02lv4wm5cb4dx5nh913h489zjrr4f3jbx")))) (build-system gnu-build-system) (home-page "http://sg.danny.cz/sg/sdparm.html") (synopsis "Provide access to SCSI device parameters") diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm index dabe951da8..7ab9a1aefc 100644 --- a/gnu/packages/game-development.scm +++ b/gnu/packages/game-development.scm @@ -7,7 +7,7 @@ ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017 Kei Kebreau <kei@openmailbox.org> ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2016 Julian Graham <joolean@gmail.com> +;;; Copyright © 2016, 2017 Julian Graham <joolean@gmail.com> ;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. @@ -209,26 +209,15 @@ necessary. (define-public gzochi (package (name "gzochi") - (version "0.10.1") + (version "0.11.1") (source (origin (method url-fetch) (uri (string-append "mirror://savannah/gzochi/gzochi-" version ".tar.gz")) (sha256 (base32 - "166rawdal45kvanhvi0bkzy1d2pwf1p0lzslb287lcnm9vdw97yy")))) + "13j1m92zhxwkaaja3lg5x0h0b28mrrawdzk9d3hd19031akfxwb3")))) (build-system gnu-build-system) - (arguments - '(#:phases (modify-phases %standard-phases - (add-before 'configure 'remove-Werror - (lambda _ - ;; We can't build with '-Werror', notably - ;; because deprecated functions of - ;; libmicrohttpd are being used. - (substitute* (find-files "." "^Makefile\\.in$") - (("-Werror") - "")) - #t))))) (native-inputs `(("pkgconfig" ,pkg-config))) (inputs `(("bdb" ,bdb) ("glib" ,glib) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 2dec9a3951..d8848f82fa 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -242,6 +242,44 @@ giant insects to killer robots and things far stranger and deadlier, and against the others like yourself, that want what you have.") (license license:cc-by-sa3.0))) +(define-public cowsay + (package + (name "cowsay") + (version "3.03") + (source (origin + (method url-fetch) + (uri (string-append "https://web.archive.org/web/20071026043648/" + "http://www.nog.net:80/~tony/warez/" + "cowsay-" version ".tar.gz")) + (sha256 + (base32 + "1bxj802na2si2bk5zh7n0b7c33mg8a5n2wnvh0vihl9bmjkp51hb")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (delete 'configure) + (delete 'install) + (replace 'build + (lambda* (#:key outputs #:allow-other-keys) + (zero? (system* "sh" "install.sh" + (assoc-ref outputs "out"))))) + (replace 'check + (lambda* (#:key outputs #:allow-other-keys) + (zero? (system* (string-append (assoc-ref outputs "out") + "/bin/cowsay") + "We're done!"))))))) + (inputs + `(("perl" ,perl))) + (home-page (string-append "https://web.archive.org/web/20071026043648/" + "http://www.nog.net:80/~tony/warez/")) + (synopsis "Speaking cow text filter") + (description "Cowsay is basically a text filter. Send some text into it, +and you get a cow saying your text. If you think a talking cow isn't enough, +cows can think too. All you have to do is run @code{cowthink}.") + ;; Any version of the GPL. + (license license:gpl3+))) + (define-public freedoom (package (name "freedoom") @@ -725,7 +763,7 @@ asynchronously and at a user-defined speed.") (define-public chess (package (name "chess") - (version "6.2.4") + (version "6.2.5") (source (origin (method url-fetch) @@ -733,7 +771,7 @@ asynchronously and at a user-defined speed.") ".tar.gz")) (sha256 (base32 - "1vw2w3jwnmn44d5vsw47f8y70xvxcsz9m5msq9fgqlzjch15qhiw")))) + "00j8s0npgfdi41a0mr5w9qbdxagdk2v41lcr42rwl1jp6miyk6cs")))) (build-system gnu-build-system) (home-page "https://www.gnu.org/software/chess/") (synopsis "Full chess implementation") diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index b560fe816a..7a7f4d35da 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -61,6 +61,7 @@ #:use-module (gnu packages bison) #:use-module (gnu packages calendar) #:use-module (gnu packages check) + #:use-module (gnu packages cmake) #:use-module (gnu packages cups) #:use-module (gnu packages curl) #:use-module (gnu packages cyrus-sasl) @@ -193,6 +194,83 @@ Desktop. It is designed to be as simple as possible and has some unique features to enable users to create their discs easily and quickly.") (license license:gpl2+))) +(define-public deja-dup + (package + (name "deja-dup") + (version "34.3") + (source (origin + (method url-fetch) + (uri "https://launchpadlibrarian.net/295170991/deja-dup-34.3.tar.xz") + (sha256 + (base32 + "1xqcr61hpbahbla7gdjn4ngjfz7w6f57y7f5pkb77yk05f60j2n9")) + (patches + (search-patches "deja-dup-use-ref-keyword-for-iter.patch")))) + (build-system glib-or-gtk-build-system) + (arguments + `(#:modules ((guix build gnu-build-system) + ((guix build cmake-build-system) #:prefix cmake:) + (guix build glib-or-gtk-build-system) + (guix build utils)) + #:imported-modules (,@%glib-or-gtk-build-system-modules + (guix build cmake-build-system)) + #:test-target "test" + #:configure-flags (list (string-append + "-DCMAKE_INSTALL_FULL_DATADIR=" %output) + (string-append + "-DCMAKE_INSTALL_LIBEXECDIR=" %output)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-lockfile-deletion + (lambda rest + (substitute* "libdeja/tools/duplicity/DuplicityInstance.vala" + (("/bin/rm") + (which "rm"))))) + (replace 'configure + (assoc-ref cmake:%standard-phases 'configure)) + (delete 'check) ;; Fails due to issues with DBus + (add-after 'install 'wrap-deja-dup + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((python (assoc-ref inputs "python")) + (python-path (getenv "PYTHONPATH")) + (duplicity (assoc-ref inputs "duplicity")) + (out (assoc-ref outputs "out"))) + (for-each + (lambda (program) + (wrap-program program + `("PATH" ":" prefix (,(string-append python "/bin") + ,(string-append duplicity "/bin")))) + (wrap-program program + `("PYTHONPATH" ":" prefix (,python-path)))) + + (find-files (string-append out "/bin"))) + #t)))))) + (inputs + `(("gsettings-desktop-schemas" ,gsettings-desktop-schemas) + ("gobject-introspection" ,gobject-introspection) + ("duplicity" ,duplicity) + ("python" ,python2-minimal) + ("python-pygobject" ,python2-pygobject) + ("gtk+" ,gtk+) + ("libnotify" ,libnotify) + ("libpeas" ,libpeas) + ("libsecret" ,libsecret) + ("packagekit" ,packagekit))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("vala" ,vala) + ("gettext" ,gettext-minimal) + ("itstool" ,itstool) + ("intltool" ,intltool) + ("cmake", cmake))) + (home-page "https://launchpad.net/deja-dup") + (synopsis "Simple backup tool, for regular encrypted backups") + (description + "Déjà Dup is a simple backup tool, for regular encrypted backups. It +uses duplicity as the backend, which supports incremental backups and storage +either on a local, or remote machine via a number of methods.") + (license license:gpl3+))) + (define-public dia ;; This version from GNOME's repository includes fixes for compiling with ;; recent versions of the build tools. The latest activity on the @@ -609,16 +687,15 @@ forgotten when the session ends.") (define-public evince (package (name "evince") - (version "3.24.0") + (version "3.24.1") (source (origin (method url-fetch) (uri (string-append "mirror://gnome/sources/" name "/" (version-major+minor version) "/" name "-" version ".tar.xz")) - (patches (search-patches "evince-CVE-2017-1000083.patch")) (sha256 (base32 - "13yw0i68dgqp9alyliy3zifszh7rikkpi1xbz5binvxxgfpraf04")))) + "0dqgzwxl0xfr341r5i8j8hn6j6rhv62lmc6xbzjppcq76hhwb84w")))) (build-system glib-or-gtk-build-system) (arguments `(#:configure-flags '("--disable-nautilus") diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm index d4f1018f86..0fb25d8432 100644 --- a/gnu/packages/gnuzilla.scm +++ b/gnu/packages/gnuzilla.scm @@ -249,7 +249,7 @@ in C/C++.") (define-public nspr (package (name "nspr") - (version "4.15") + (version "4.16") (source (origin (method url-fetch) (uri (string-append @@ -257,7 +257,7 @@ in C/C++.") version "/src/nspr-" version ".tar.gz")) (sha256 (base32 - "101dksqm1z0hzd7ap82ccbxjr48s6q3xhshdl81qkj6hqdmy1p97")))) + "1l9wlnb9y0bzicv448jjl9kssqn044dc2qrkwzp4ll35fvch4ccv")))) (build-system gnu-build-system) (native-inputs `(("perl" ,perl))) @@ -281,7 +281,7 @@ in the Mozilla clients.") (define-public nss (package (name "nss") - (version "3.31") + (version "3.32") (source (origin (method url-fetch) (uri (let ((version-with-underscores @@ -292,7 +292,7 @@ in the Mozilla clients.") "nss-" version ".tar.gz"))) (sha256 (base32 - "0pd643a8ns7q5az5ai3ascrw666i2kbfiyy1c9hlhw9jd8jn21g9")) + "0dfkgvah0ji8b8lpxyy2w0b3lyz5ldmryii4z7j2bfwnrj0z7iim")) ;; Create nss.pc and nss-config. (patches (search-patches "nss-pkgconfig.patch" "nss-increase-test-timeout.patch")))) @@ -364,6 +364,7 @@ in the Mozilla clients.") ;; phase to fail. Here we simply delete libgtest1.so, since it ;; seems to be used only during the tests. (delete-file (string-append lib "/libgtest1.so")) + (delete-file (string-append lib "/libgtestutil.so")) #t)))))) (inputs diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm index 0d1989e524..0297b9b21d 100644 --- a/gnu/packages/guile.scm +++ b/gnu/packages/guile.scm @@ -1554,16 +1554,28 @@ is no support for parsing block and inline level HTML.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "04lgh0nk6ddnwgh20hnz4pyhczaik0xbd50kikjsxcwcl46shavb")))) + "04lgh0nk6ddnwgh20hnz4pyhczaik0xbd50kikjsxcwcl46shavb")) + (patches (search-patches "guile-bytestructures-name-clash.patch")))) (build-system trivial-build-system) (arguments `(#:modules ((guix build utils)) #:builder (begin (use-modules (guix build utils) + (ice-9 ftw) (ice-9 match) (ice-9 popen) (ice-9 rdelim)) + ;; Unpack. + (setenv "PATH" + (string-join (list (assoc-ref %build-inputs "tar") + (assoc-ref %build-inputs "xz")) + "/bin:" 'suffix)) + (system* "tar" "xf" (assoc-ref %build-inputs "source")) + (match (scandir ".") + (("." ".." directory) + (chdir directory))) + (let* ((out (assoc-ref %outputs "out")) (guile (assoc-ref %build-inputs "guile")) (effective (read-line @@ -1572,7 +1584,7 @@ is no support for parsing block and inline level HTML.") "-c" "(display (effective-version))"))) (module-dir (string-append out "/share/guile/site/" effective)) - (source (assoc-ref %build-inputs "source")) + (source (getcwd)) (doc (string-append out "/share/doc/scheme-bytestructures")) (sld-files (with-directory-excursion source (find-files "bytestructures/r7" "\\.exports.sld$"))) @@ -1612,6 +1624,9 @@ is no support for parsing block and inline level HTML.") ;; Also copy over the README. (install-file "README.md" doc) #t)))) + (native-inputs + `(("tar" ,tar) + ("xz" ,xz))) (inputs `(("guile" ,guile-2.2))) (home-page "https://github.com/TaylanUB/scheme-bytestructures") @@ -1624,6 +1639,9 @@ an abstraction over raw memory. It's also more powerful than the C type system, elevating types to first-class status.") (license license:gpl3+))) +(define-public guile2.0-bytestructures + (package-for-guile-2.0 guile-bytestructures)) + (define-public guile-aspell (package (name "guile-aspell") @@ -1838,6 +1856,9 @@ is not available for Guile 2.0.") manipulate repositories of the Git version control system.") (license license:gpl3+)))) +(define-public guile2.0-git + (package-for-guile-2.0 guile-git)) + (define-public guile-syntax-highlight (let ((commit "a047675e66861b647426372aa2ba7820f749616d") (revision "0")) diff --git a/gnu/packages/image-viewers.scm b/gnu/packages/image-viewers.scm index 6d85fce40b..644780b5e9 100644 --- a/gnu/packages/image-viewers.scm +++ b/gnu/packages/image-viewers.scm @@ -54,7 +54,7 @@ (define-public feh (package (name "feh") - (version "2.19") + (version "2.19.1") (home-page "https://feh.finalrewind.org/") (source (origin (method url-fetch) @@ -62,11 +62,11 @@ name "-" version ".tar.bz2")) (sha256 (base32 - "1sfhr6628xpj9p6bqihdq35y139x2gmrpydjlrwsl1rs77c2bgnf")))) + "1d4ycmai3dpajl0bdr9i56646g4h5j1lb95jjn0nckwcddcj927c")))) (build-system gnu-build-system) (arguments '(#:phases (alist-delete 'configure %standard-phases) - #:tests? #f + #:tests? #f ;FIXME: Requires 'perl-test-command'. #:make-flags (list "CC=gcc" (string-append "PREFIX=" (assoc-ref %outputs "out"))))) (inputs `(("imlib2" ,imlib2) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index f8093f590f..d0504f823d 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -106,6 +106,7 @@ #:use-module (guix build-system python) #:use-module (guix build-system trivial) #:use-module (guix download) + #:use-module (guix git-download) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix utils) @@ -1189,14 +1190,96 @@ consists of several tools, of which the most important are @command{ip} and messages and are accompanied by a set of manpages.") (license license:gpl2+))) +;; There are two packages for net-tools. The first, net-tools, is more recent +;; and probably safer to use with untrusted inputs (i.e. the internet). The +;; second, net-tools-for-tests, is relatively old and buggy. It can be used in +;; package test suites and should never be referred to by a built package. Use +;; #:disallowed-references to enforce this. +;; +;; When we are able to rebuild many packages (i.e. core-updates), we can update +;; net-tools-for-tests if appropriate. +;; +;; See <https://bugs.gnu.org/27811> for more information. (define-public net-tools ;; XXX: This package is basically unmaintained, but it provides a few ;; commands not yet provided by Inetutils, such as 'route', so we have to ;; live with it. - (package - (name "net-tools") + (let ((commit "479bb4a7e11a4084e2935c0a576388f92469225b") + (revision "0")) + (package + (name "net-tools") + (version (string-append "1.60-" revision "." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://git.code.sf.net/p/net-tools/code") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "189mdjfbd7j7j0jysy34nqn5byy9g5f6ylip1sikk7kz08vjml4s")))) + (home-page "http://net-tools.sourceforge.net/") + (build-system gnu-build-system) + (arguments + '(#:modules ((guix build gnu-build-system) + (guix build utils) + (srfi srfi-1) + (srfi srfi-26)) + #:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (mkdir-p (string-append out "/bin")) + (mkdir-p (string-append out "/sbin")) + + ;; Pretend we have everything... + (system "yes | make config") + + ;; ... except for the things we don't have. + ;; HAVE_AFDECnet requires libdnet, which we don't have. + ;; HAVE_HWSTRIP and HAVE_HWTR require kernel headers + ;; that have been removed. + ;; XXX SELINUX and AFBLUETOOTH are removed for now, but we should + ;; think about adding them later. + (substitute* '("config.make" "config.h") + (("^.*HAVE_(AFDECnet|HWSTRIP|HWTR|SELINUX|AFBLUETOOTH)[ =]1.*$") + ""))))) + (add-after 'install 'remove-redundant-commands + (lambda* (#:key outputs #:allow-other-keys) + ;; Remove commands and man pages redundant with Inetutils. + (let* ((out (assoc-ref outputs "out")) + (dup (append-map (cut find-files out <>) + '("^hostname" + "^(yp|nis|dns)?domainname")))) + (for-each delete-file dup) + #t)))) + ;; Binaries that depend on libnet-tools.a don't declare that + ;; dependency, making it parallel-unsafe. + #:parallel-build? #f + + #:tests? #f ; no test suite + #:make-flags (let ((out (assoc-ref %outputs "out"))) + (list "CC=gcc" + (string-append "BASEDIR=" out) + (string-append "INSTALLNLSDIR=" out "/share/locale") + (string-append "mandir=/share/man"))))) + (native-inputs `(("gettext" ,gettext-minimal))) + (synopsis "Tools for controlling the network subsystem in Linux") + (description + "This package includes the important tools for controlling the network +subsystem of the Linux kernel. This includes arp, ifconfig, netstat, rarp and +route. Additionally, this package contains utilities relating to particular +network hardware types (plipconfig, slattach) and advanced aspects of IP +configuration (iptunnel, ipmaddr).") + (license license:gpl2+)))) + +(define-public net-tools-for-tests + (hidden-package (package (inherit net-tools) (version "1.60") - (home-page "http://net-tools.sourceforge.net/") + ;; Git depends on net-tools-for-tests via GnuTLS, so we can't use git-fetch + ;; here. We should find a better workaround for this problem so that we can + ;; use the latest upstream source. (source (origin (method url-fetch) (uri (list (string-append @@ -1272,23 +1355,17 @@ messages and are accompanied by a set of manpages.") ;; Use the big Debian patch set (the thing does not even compile out of ;; the box.) + ;; XXX The patch is not actually applied, due to a bug in the 'patch' phase + ;; above. However, this package variant is only used in GnuTLS's tests. It + ;; will be adjusted when convenient for the build farm. + ;; See <https://bugs.gnu.org/27811> for more information. (inputs `(("patch" ,(origin (method url-fetch) (uri "http://ftp.de.debian.org/debian/pool/main/n/net-tools/net-tools_1.60-24.2.diff.gz") (sha256 (base32 - "0p93lsqx23v5fv4hpbrydmfvw1ha2rgqpn2zqbs2jhxkzhjc030p")))))) - (native-inputs `(("gettext" ,gettext-minimal))) - - (synopsis "Tools for controlling the network subsystem in Linux") - (description - "This package includes the important tools for controlling the network -subsystem of the Linux kernel. This includes arp, ifconfig, netstat, rarp and -route. Additionally, this package contains utilities relating to particular -network hardware types (plipconfig, slattach) and advanced aspects of IP -configuration (iptunnel, ipmaddr).") - (license license:gpl2+))) + "0p93lsqx23v5fv4hpbrydmfvw1ha2rgqpn2zqbs2jhxkzhjc030p"))))))))) (define-public libcap (package diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm index e92ae2ebfe..224cea56f6 100644 --- a/gnu/packages/lisp.scm +++ b/gnu/packages/lisp.scm @@ -88,6 +88,10 @@ `(#:parallel-build? #f ; The build system seems not to be thread safe. #:tests? #f ; There does not seem to be make check or anything similar. #:configure-flags '("--enable-ansi") ; required for use by the maxima package + #:make-flags (list + "CFLAGS=-fgnu89-inline" ; removes inline function warnings + (string-append "GCC=" (assoc-ref %build-inputs "gcc") + "/bin/gcc")) #:phases (modify-phases %standard-phases (add-before 'configure 'pre-conf (lambda _ @@ -104,6 +108,27 @@ (string-append "SHELL=" (which "bash"))) (("SHELL=/bin/sh") (string-append "SHELL=" (which "sh")))) + (substitute* "h/linux.defs" + (("#CC") "CC") + (("-fwritable-strings") "") + (("-Werror") "")) + #t)) + (add-after 'install 'wrap + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((gcl (assoc-ref outputs "out")) + (input-path (lambda (lib path) + (string-append + (assoc-ref inputs lib) path))) + (binaries '("binutils"))) + ;; GCC and the GNU binutils are necessary for GCL to be + ;; able to compile Lisp functions and programs (this is + ;; a standard feature in Common Lisp). While the + ;; the location of GCC is specified in the make-flags, + ;; the GNU binutils must be available in GCL's $PATH. + (wrap-program (string-append gcl "/bin/gcl") + `("PATH" prefix ,(map (lambda (binary) + (input-path binary "/bin")) + binaries)))) #t)) ;; drop strip phase to make maxima build, see ;; https://www.ma.utexas.edu/pipermail/maxima/2008/009769.html diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 7374cdda1f..cc76a93ed0 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -667,14 +667,14 @@ invoking @command{notifymuch} from the post-new hook.") (define-public notmuch (package (name "notmuch") - (version "0.24.2") + (version "0.25") (source (origin (method url-fetch) (uri (string-append "https://notmuchmail.org/releases/notmuch-" version ".tar.gz")) (sha256 (base32 - "0lfchvapk11qazdgsxj42igp9mpp83zbd0h1jj6r3ifmhikajxma")))) + "02z6d87ip1hkipz8d7w0sfklg8dd5fd5vlgp768640ixg0gqvlk5")))) (build-system gnu-build-system) (arguments '(#:make-flags (list "V=1") ; Verbose test output. @@ -930,6 +930,11 @@ compresses it.") (arguments '(#:configure-flags '("--enable-gnutls" "--enable-pgpmime-plugin" "--enable-enchant") + #:make-flags + ;; Disable updating icon cache since it's done by the profile hook. + ;; Conflict with other packages in the profile would be inevitable + ;; otherwise. + '("gtk_update_icon_cache=true") #:phases (modify-phases %standard-phases (add-before 'build 'patch-mime (lambda* (#:key inputs #:allow-other-keys) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 87cc46b0a4..4a29b43aa3 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -316,7 +316,7 @@ the OCaml language.") (define-public glpk (package (name "glpk") - (version "4.62") + (version "4.63") (source (origin (method url-fetch) @@ -324,7 +324,7 @@ the OCaml language.") version ".tar.gz")) (sha256 (base32 - "0w7s3869ybwyq9a4490dikpib1qp3jnn5nqz1vvwqy1qz3ilnvh9")))) + "1xp7nclmp8inp20968bvvfcwmz3mz03sbm0v3yjz8aqwlpqjfkci")))) (build-system gnu-build-system) (inputs `(("gmp" ,gmp))) @@ -2075,8 +2075,7 @@ to BMP, JPEG or PNG image formats.") (patches (search-patches "maxima-defsystem-mkdir.patch")))) (build-system gnu-build-system) (inputs - `(("gcc" ,gcc) - ("gcl" ,gcl) + `(("gcl" ,gcl) ("gnuplot" ,gnuplot) ;for plots ("tk" ,tk))) ;Tcl/Tk is used by 'xmaxima' (native-inputs @@ -2100,13 +2099,6 @@ to BMP, JPEG or PNG image formats.") #:make-flags (list "TMPDIR=/tmp") #:phases (modify-phases %standard-phases - (add-before 'configure 'set-gcc-path - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "lisp-utils/defsystem.lisp" - (("\\(defparameter \\*c-compiler\\* \"gcc\"\\)") - (string-append "(defparameter *c-compiler* \"" - (assoc-ref inputs "gcc") "/bin/gcc\")"))) - #t)) (add-before 'check 'pre-check (lambda _ (chmod "src/maxima" #o555) @@ -2118,7 +2110,9 @@ to BMP, JPEG or PNG image formats.") (lambda* (#:key outputs inputs #:allow-other-keys) (let* ((gnuplot (assoc-ref inputs "gnuplot")) (out (assoc-ref outputs "out")) - (datadir (string-append out "/share/maxima/" ,version))) + (datadir (string-append out "/share/maxima/" ,version)) + (binutils (string-append (assoc-ref inputs "binutils") + "/bin"))) (with-directory-excursion out (mkdir-p "share/emacs") (mkdir-p "share/doc") @@ -2134,7 +2128,11 @@ to BMP, JPEG or PNG image formats.") (format out "~a ~s~a~%" "(setf $gnuplot_command " (string-append gnuplot "/bin/gnuplot") ")") - (dump-port in out))))) + (dump-port in out)))) + ;; Ensure that Maxima will have access to the GNU binutils + ;; components at runtime. + (wrap-program (string-append out "/bin/maxima") + `("PATH" prefix (,binutils)))) #t))))) (home-page "http://maxima.sourceforge.net") (synopsis "Numeric and symbolic expression manipulation") diff --git a/gnu/packages/mg.scm b/gnu/packages/mg.scm deleted file mode 100644 index 5df6770009..0000000000 --- a/gnu/packages/mg.scm +++ /dev/null @@ -1,76 +0,0 @@ -;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.org> -;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org> -;;; -;;; This file is part of GNU Guix. -;;; -;;; GNU Guix is free software; you can redistribute it and/or modify it -;;; under the terms of the GNU General Public License as published by -;;; the Free Software Foundation; either version 3 of the License, or (at -;;; your option) any later version. -;;; -;;; GNU Guix is distributed in the hope that it will be useful, but -;;; WITHOUT ANY WARRANTY; without even the implied warranty of -;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -;;; GNU General Public License for more details. -;;; -;;; You should have received a copy of the GNU General Public License -;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. - -(define-module (gnu packages mg) - #:use-module (guix licenses) - #:use-module (guix download) - #:use-module (guix packages) - #:use-module (guix build-system gnu) - #:use-module (gnu packages libbsd) - #:use-module (gnu packages ncurses) - #:use-module (gnu packages pkg-config)) - -(define-public mg - (package - (name "mg") - (version "20161005") - (source (origin - (method url-fetch) - (uri (string-append "http://homepage.boetes.org/software/mg/mg-" - version ".tar.gz")) - (sha256 - (base32 - "0qaydk2cy765n9clghmi5gdnpwn15y2v0fj6r0jcm0v7d89vbz5p")) - (modules '((guix build utils))) - (snippet - '(begin - (substitute* "GNUmakefile" - (("/usr/bin/") "")))))) - (build-system gnu-build-system) - (native-inputs - `(("pkg-config" ,pkg-config))) - (inputs - `(("libbsd" ,libbsd) - ("ncurses" ,ncurses))) - (arguments - ;; No test suite available. - '(#:tests? #f - #:make-flags (list (string-append "prefix=" %output) - "CURSES_LIBS=-lncurses" - "CC=gcc") - #:phases (modify-phases %standard-phases - (delete 'configure) - (add-before 'install 'patch-tutorial-location - (lambda* (#:key outputs #:allow-other-keys) - (substitute* "mg.1" - (("/usr") (assoc-ref outputs "out"))) - #t)) - (add-after 'install 'install-tutorial - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (doc (string-append out "/share/doc/mg"))) - (install-file "tutorial" doc) - #t)))))) - (home-page "http://homepage.boetes.org/software/mg/") - (synopsis "Microscopic GNU Emacs clone") - (description - "Mg (mg) is a GNU Emacs style editor, with which it is \"broadly\" -compatible. This is a portable version of the mg maintained by the OpenBSD -team.") - (license public-domain))) diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm index 3b1ba003c6..54fdd35ad5 100644 --- a/gnu/packages/mpi.scm +++ b/gnu/packages/mpi.scm @@ -3,6 +3,7 @@ ;;; Copyright © 2014, 2015, 2016, 2017 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> +;;; Copyright © 2017 Dave Love <fx@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -110,7 +111,7 @@ bind processes, and much more.") (define-public openmpi (package (name "openmpi") - (version "1.10.3") + (version "1.10.7") (source (origin (method url-fetch) @@ -119,8 +120,9 @@ bind processes, and much more.") "/downloads/openmpi-" version ".tar.bz2")) (sha256 (base32 - "0k95ri9f8kzx5vhzrdbzn59rn2324fs4a96w5v8jy20j8dkbp13l")))) + "142s1vny9gllkq336yafxayjgcirj2jv0ddabj879jgya7hyr2d0")))) (build-system gnu-build-system) + (outputs '("out" "static")) (inputs `(("hwloc" ,hwloc "lib") ("gfortran" ,gfortran) @@ -137,6 +139,7 @@ bind processes, and much more.") "--enable-mpi-ext=all" "--with-devel-headers" "--enable-memchecker" + "--with-sge" ,(string-append "--with-valgrind=" (assoc-ref %build-inputs "valgrind")) ,(string-append "--with-hwloc=" @@ -153,11 +156,25 @@ bind processes, and much more.") (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) (for-each delete-file (find-files out "config.log")) + #t))) + (add-after 'install 'move-static-libraries + (lambda* (#:key outputs #:allow-other-keys) + ;; Move 19 MiB of static libraries to 'static'. + (let* ((out (assoc-ref outputs "out")) + (static (assoc-ref outputs "static")) + (lib (string-append out "/lib")) + (slib (string-append static "/lib"))) + (mkdir-p slib) + (for-each (lambda (file) + (rename-file + file + (string-append slib "/" (basename file)))) + (find-files lib "\\.a$")) #t)))))) (home-page "http://www.open-mpi.org") - (synopsis "MPI-2 implementation") + (synopsis "MPI-3 implementation") (description - "The Open MPI Project is an MPI-2 implementation that is developed and + "The Open MPI Project is an MPI-3 implementation that is developed and maintained by a consortium of academic, research, and industry partners. Open MPI is therefore able to combine the expertise, technologies, and resources from all across the High Performance Computing community in order to build the diff --git a/gnu/packages/ncurses.scm b/gnu/packages/ncurses.scm index 65531ec202..9f5905bc89 100644 --- a/gnu/packages/ncurses.scm +++ b/gnu/packages/ncurses.scm @@ -206,7 +206,7 @@ ncursesw library provides wide character support.") (define-public dialog (package (name "dialog") - (version "1.2-20150920") + (version "1.3-20170509") (source (origin (method url-fetch) (uri (string-append @@ -214,7 +214,7 @@ ncursesw library provides wide character support.") version ".tgz")) (sha256 (base32 - "01ccd585c241nkj02n0zdbx8jqhylgcfpcmmshynh0c7fv2ixrn4")))) + "0mj7rl5psilaj3bxxvjfd44qjknxjli98b0d1lxd3f9jqrsbmw9g")))) (build-system gnu-build-system) (arguments `(#:tests? #f)) ; no test suite diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index 2f4d3d233e..5f555ee67f 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -441,7 +441,7 @@ and up to 1 Mbit/s downstream.") (define-public whois (package (name "whois") - (version "5.2.16") + (version "5.2.17") (source (origin (method url-fetch) @@ -449,7 +449,7 @@ and up to 1 Mbit/s downstream.") name "_" version ".tar.xz")) (sha256 (base32 - "0fpwac26ja0rdqsbxyjcsk8gxgixfpxk0baj3rhnpaff3jv0ilp9")))) + "0r4np8gaxhy9c0v795dc4dhxms9zak31vd378sb1h7jpixkqax95")))) (build-system gnu-build-system) ;; TODO: unbundle mkpasswd binary + its po files. (arguments diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index 8a5062802c..b2e4a6a2c8 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -76,8 +76,8 @@ ;; Note: the 'update-guix-package.scm' script expects this definition to ;; start precisely like this. (let ((version "0.13.0") - (commit "b547349d505c57fd679b6e48c472d8ab65469c96") - (revision 3)) + (commit "f1ddfe4f14b8a8d963f2f3e68d800b745696246d") + (revision 4)) (package (name "guix") @@ -93,7 +93,7 @@ (commit commit))) (sha256 (base32 - "0q6qr9hvrac1wj2ygn4jj4w89h1m35zkcjjd741sibc3l46pa93l")) + "11yjsn957igh6migxrnicdqrxc76skz5r0l7hfnm5gp45my1kd9p")) (file-name (string-append "guix-" version "-checkout")))) (build-system gnu-build-system) (arguments diff --git a/gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch b/gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch new file mode 100644 index 0000000000..a03e0c5481 --- /dev/null +++ b/gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch @@ -0,0 +1,41 @@ +From 5676766be5e845ccb6cdf46cfa8722497f151752 Mon Sep 17 00:00:00 2001 +From: Jeremy Bicha <jbicha@ubuntu.com> +Date: Fri, 16 Jun 2017 15:11:37 -0400 +Subject: Use 'ref' keyword for iter, requires vala 0.36 + + +diff --git a/deja-dup/widgets/ConfigList.vala b/deja-dup/widgets/ConfigList.vala +index 15de2d6..02cd81a 100644 +--- a/deja-dup/widgets/ConfigList.vala ++++ b/deja-dup/widgets/ConfigList.vala +@@ -333,7 +333,7 @@ public class ConfigList : ConfigWidget + + model.row_deleted.disconnect(write_to_config); + foreach (Gtk.TreeIter iter in iters) { +- (model as Gtk.ListStore).remove(iter); ++ (model as Gtk.ListStore).remove(ref iter); + } + model.row_deleted.connect(write_to_config); + +diff --git a/deja-dup/widgets/ConfigLocation.vala b/deja-dup/widgets/ConfigLocation.vala +index 869e2a8..d21c556 100644 +--- a/deja-dup/widgets/ConfigLocation.vala ++++ b/deja-dup/widgets/ConfigLocation.vala +@@ -397,12 +397,12 @@ public class ConfigLocation : ConfigWidget + if (uuid == saved_uuid) + return; + +- store.remove(iter); ++ store.remove(ref iter); + + if (--num_volumes == 0) { + Gtk.TreeIter sep_iter; + if (store.get_iter_from_string(out sep_iter, index_vol_sep.to_string())) { +- store.remove(sep_iter); ++ store.remove(ref sep_iter); + index_vol_sep = -2; + } + } +-- +cgit v0.10.2 + diff --git a/gnu/packages/patches/evince-CVE-2017-1000083.patch b/gnu/packages/patches/evince-CVE-2017-1000083.patch deleted file mode 100644 index 2ca062f337..0000000000 --- a/gnu/packages/patches/evince-CVE-2017-1000083.patch +++ /dev/null @@ -1,109 +0,0 @@ -Fix CVE-2017-1000083. - -http://seclists.org/oss-sec/2017/q3/128 -https://bugzilla.gnome.org/show_bug.cgi?id=784630 - -Patch copied from upstream source repository: - -https://git.gnome.org/browse/evince/commit/?id=717df38fd8509bf883b70d680c9b1b3cf36732ee - -From 717df38fd8509bf883b70d680c9b1b3cf36732ee Mon Sep 17 00:00:00 2001 -From: Bastien Nocera <hadess@hadess.net> -Date: Thu, 6 Jul 2017 20:02:00 +0200 -Subject: comics: Remove support for tar and tar-like commands - -diff --git a/backend/comics/comics-document.c b/backend/comics/comics-document.c -index 4c74731..641d785 100644 ---- a/backend/comics/comics-document.c -+++ b/backend/comics/comics-document.c -@@ -56,8 +56,7 @@ typedef enum - RARLABS, - GNAUNRAR, - UNZIP, -- P7ZIP, -- TAR -+ P7ZIP - } ComicBookDecompressType; - - typedef struct _ComicsDocumentClass ComicsDocumentClass; -@@ -117,9 +116,6 @@ static const ComicBookDecompressCommand command_usage_def[] = { - - /* 7zip */ - {NULL , "%s l -- %s" , "%s x -y %s -o%s", FALSE, OFFSET_7Z}, -- -- /* tar */ -- {"%s -xOf" , "%s -tf %s" , NULL , FALSE, NO_OFFSET} - }; - - static GSList* get_supported_image_extensions (void); -@@ -364,13 +360,6 @@ comics_check_decompress_command (gchar *mime_type, - comics_document->command_usage = GNAUNRAR; - return TRUE; - } -- comics_document->selected_command = -- g_find_program_in_path ("bsdtar"); -- if (comics_document->selected_command) { -- comics_document->command_usage = TAR; -- return TRUE; -- } -- - } else if (g_content_type_is_a (mime_type, "application/x-cbz") || - g_content_type_is_a (mime_type, "application/zip")) { - /* InfoZIP's unzip program */ -@@ -396,12 +385,6 @@ comics_check_decompress_command (gchar *mime_type, - comics_document->command_usage = P7ZIP; - return TRUE; - } -- comics_document->selected_command = -- g_find_program_in_path ("bsdtar"); -- if (comics_document->selected_command) { -- comics_document->command_usage = TAR; -- return TRUE; -- } - - } else if (g_content_type_is_a (mime_type, "application/x-cb7") || - g_content_type_is_a (mime_type, "application/x-7z-compressed")) { -@@ -425,27 +408,6 @@ comics_check_decompress_command (gchar *mime_type, - comics_document->command_usage = P7ZIP; - return TRUE; - } -- comics_document->selected_command = -- g_find_program_in_path ("bsdtar"); -- if (comics_document->selected_command) { -- comics_document->command_usage = TAR; -- return TRUE; -- } -- } else if (g_content_type_is_a (mime_type, "application/x-cbt") || -- g_content_type_is_a (mime_type, "application/x-tar")) { -- /* tar utility (Tape ARchive) */ -- comics_document->selected_command = -- g_find_program_in_path ("tar"); -- if (comics_document->selected_command) { -- comics_document->command_usage = TAR; -- return TRUE; -- } -- comics_document->selected_command = -- g_find_program_in_path ("bsdtar"); -- if (comics_document->selected_command) { -- comics_document->command_usage = TAR; -- return TRUE; -- } - } else { - g_set_error (error, - EV_DOCUMENT_ERROR, -diff --git a/configure.ac b/configure.ac -index 9e9f831..7eb0f1f 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -795,7 +795,7 @@ AC_SUBST(TIFF_MIME_TYPES) - AC_SUBST(APPDATA_TIFF_MIME_TYPES) - AM_SUBST_NOTMAKE(APPDATA_TIFF_MIME_TYPES) - if test "x$enable_comics" = "xyes"; then -- COMICS_MIME_TYPES="application/x-cbr;application/x-cbz;application/x-cb7;application/x-cbt;application/x-ext-cbr;application/x-ext-cbz;application/vnd.comicbook+zip;application/x-ext-cb7;application/x-ext-cbt" -+ COMICS_MIME_TYPES="application/x-cbr;application/x-cbz;application/x-cb7;application/x-ext-cbr;application/x-ext-cbz;application/vnd.comicbook+zip;application/x-ext-cb7;" - APPDATA_COMICS_MIME_TYPES=$(echo "<mimetype>$COMICS_MIME_TYPES</mimetype>" | sed -e 's/;/<\/mimetype>\n <mimetype>/g') - if test -z "$EVINCE_MIME_TYPES"; then - EVINCE_MIME_TYPES="${COMICS_MIME_TYPES}" --- -cgit v0.12 - diff --git a/gnu/packages/patches/guile-bytestructures-name-clash.patch b/gnu/packages/patches/guile-bytestructures-name-clash.patch new file mode 100644 index 0000000000..ac834dd504 --- /dev/null +++ b/gnu/packages/patches/guile-bytestructures-name-clash.patch @@ -0,0 +1,31 @@ +This patch works around a name clash between the 'cstring-pointer' module and +the 'cstring-module' variable that occurs in Guile 2.0: + + ice-9/boot-9.scm:109:20: re-exporting local variable: cstring-pointer + +--- guile-bytestructures-20170402.91d042e-checkout/bytestructures/guile.scm 2017-07-25 17:04:32.858289986 +0200 ++++ guile-bytestructures-20170402.91d042e-checkout/bytestructures/guile.scm 2017-07-25 17:04:41.130244725 +0200 +@@ -1,6 +1,6 @@ + (define-module (bytestructures guile)) + +-(import ++(use-modules + (bytestructures guile base) + (bytestructures guile vector) + (bytestructures guile struct) +@@ -8,7 +8,7 @@ + (bytestructures guile pointer) + (bytestructures guile numeric) + (bytestructures guile string) +- (bytestructures guile cstring-pointer)) ++ ((bytestructures guile cstring-pointer) #:prefix cstr:)) + (re-export + make-bytestructure-descriptor + bytestructure-descriptor? +@@ -75,5 +75,5 @@ + + bs:string + +- cstring-pointer ++ cstr:cstring-pointer + ) diff --git a/gnu/packages/patches/nss-pkgconfig.patch b/gnu/packages/patches/nss-pkgconfig.patch index a33e05fcf2..e3145aa4cf 100644 --- a/gnu/packages/patches/nss-pkgconfig.patch +++ b/gnu/packages/patches/nss-pkgconfig.patch @@ -221,5 +221,5 @@ Later adapted to apply cleanly to nss-3.21. RELEASE = nss --DIRS = coreconf lib cmd gtests -+DIRS = coreconf lib cmd gtests config +-DIRS = coreconf lib cmd cpputil gtests ++DIRS = coreconf lib cmd cpputil gtests config diff --git a/gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch b/gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch new file mode 100644 index 0000000000..74613cb632 --- /dev/null +++ b/gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch @@ -0,0 +1,62 @@ +Fix CVE-2017-10788: + +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-10788 + +Patch written to match corrected documentation specifications: + +Old: http://web.archive.org/web/20161220021610/https://dev.mysql.com/doc/refman/5.7/en/mysql-stmt-close.html +New: https://dev.mysql.com/doc/refman/5.7/en/mysql-stmt-close.html + +The patch itself is from https://github.com/perl5-dbi/DBD-mysql/issues/120#issuecomment-312420660. + +From 9ce10cfae7138c37c3a0cb2ba2a1d682482943d0 Mon Sep 17 00:00:00 2001 +From: Pali <pali@cpan.org> +Date: Sun, 25 Jun 2017 10:07:39 +0200 +Subject: [PATCH] Fix use-after-free after calling mysql_stmt_close() + +Ignore return value from mysql_stmt_close() and also its error message +because it points to freed memory after mysql_stmt_close() was called. +--- + dbdimp.c | 8 ++------ + mysql.xs | 7 ++----- + 2 files changed, 4 insertions(+), 11 deletions(-) + +diff --git a/dbdimp.c b/dbdimp.c +index c60a5f6..a6410e5 100644 +--- a/dbdimp.c ++++ b/dbdimp.c +@@ -4894,12 +4894,8 @@ void dbd_st_destroy(SV *sth, imp_sth_t *imp_sth) { + + if (imp_sth->stmt) + { +- if (mysql_stmt_close(imp_sth->stmt)) +- { +- do_error(DBIc_PARENT_H(imp_sth), mysql_stmt_errno(imp_sth->stmt), +- mysql_stmt_error(imp_sth->stmt), +- mysql_stmt_sqlstate(imp_sth->stmt)); +- } ++ mysql_stmt_close(imp_sth->stmt); ++ imp_sth->stmt= NULL; + } + #endif + +diff --git a/mysql.xs b/mysql.xs +index 55376e1..affde59 100644 +--- a/mysql.xs ++++ b/mysql.xs +@@ -434,11 +434,8 @@ do(dbh, statement, attr=Nullsv, ...) + if (bind) + Safefree(bind); + +- if(mysql_stmt_close(stmt)) +- { +- fprintf(stderr, "\n failed while closing the statement"); +- fprintf(stderr, "\n %s", mysql_stmt_error(stmt)); +- } ++ mysql_stmt_close(stmt); ++ stmt= NULL; + + if (retval == -2) /* -2 means error */ + { +-- +1.7.9.5 diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index c903de4c36..a088fefb86 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -4659,7 +4659,7 @@ reruns flaky tests. Ideally, tests reliably pass or fail, but sometimes test fixtures must rely on components that aren't 100% reliable. With flaky, instead of removing -those tests or marking them to @code{@skip}, they can be automatically +those tests or marking them to @code{@@skip}, they can be automatically retried.") (license license:asl2.0))) @@ -5876,7 +5876,11 @@ features useful for text console applications.") (inherit python2-urwid) (arguments (append - '(#:phases + `(;; Explicitly using Python 2 is necessary due the argument list being + ;; built from only the 'delete-test_vterm.py' phase and python-urwid's + ;; package arguments, which by default assumes the use of Python 3. + #:python ,python-2 + #:phases (modify-phases %standard-phases ;; Disable the vterm tests because of non-deterministic failures ;; with Python 2. See https://github.com/urwid/urwid/issues/230. @@ -7637,14 +7641,14 @@ responses, rather than doing any computation.") (define-public python-cryptography-vectors (package (name "python-cryptography-vectors") - (version "2.0") + (version "2.0.2") (source (origin (method url-fetch) (uri (pypi-uri "cryptography_vectors" version)) (sha256 (base32 - "0qadys01517k5wy0rifxip02p08kzrqxm5j0lmmlp0kr07h9jc7h")))) + "0yvi2cp23rg20bq3hd47ixbvjh0zgxnxrriqx5v17d7vkmliwbsi")))) (build-system python-build-system) (home-page "https://github.com/pyca/cryptography") (synopsis "Test vectors for the cryptography package") @@ -7659,14 +7663,14 @@ responses, rather than doing any computation.") (define-public python-cryptography (package (name "python-cryptography") - (version "2.0") + (version "2.0.2") (source (origin (method url-fetch) (uri (pypi-uri "cryptography" version)) (sha256 (base32 - "1c40qlxyn1jgg99f3pqi7146d3561rn9zdqc7w8f7kwr9ysm696k")))) + "1aq6ilnf2zdqshwqai4w8gmb5y6p7ip34qrjp1yb7sz77rkb501p")))) (build-system python-build-system) (inputs `(("openssl" ,openssl))) @@ -15812,3 +15816,30 @@ pure Python module.") (define-public python2-rencode (package-with-python2 python-rencode)) + +(define-public python-flask-principal + (package + (name "python-flask-principal") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Flask-Principal" version)) + (sha256 + (base32 + "0lwlr5smz8vfm5h9a9i7da3q1c24xqc6vm9jdywdpgxfbi5i7mpm")))) + (build-system python-build-system) + (propagated-inputs + `(("python-blinker" ,python-blinker))) + (native-inputs + `(("python-flask" ,python-flask) + ("python-nose" ,python-nose))) + (home-page "http://packages.python.org/Flask-Principal/") + (synopsis "Identity management for Flask") + (description "@code{flask_principal} is a identity management library for +Flask. It supports managing both authentication and authorization data in a +thread-local variable.") + (license license:expat))) + +(define-public python2-flask-principal + (package-with-python2 python-flask-principal)) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 604bdf9c5f..e9bda5c1fa 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3900,14 +3900,14 @@ hierarchical clustering dendrograms.") (define-public r-preprocesscore (package (name "r-preprocesscore") - (version "1.38.0") + (version "1.38.1") (source (origin (method url-fetch) (uri (bioconductor-uri "preprocessCore" version)) (sha256 (base32 - "1vq8hwxz73j93q0ldw5bnhbas1f2ha5q1lr9pp4l8gp8zdwzfrjn")))) + "1ggvmak13rhxc4ghf16ncjfvgszc8yvza93s2l9kn8yiwr96vp2h")))) (properties `((upstream-name . "preprocessCore"))) (build-system r-build-system) diff --git a/gnu/packages/text-editors.scm b/gnu/packages/text-editors.scm index 98df48119a..7843c120aa 100644 --- a/gnu/packages/text-editors.scm +++ b/gnu/packages/text-editors.scm @@ -3,7 +3,8 @@ ;;; Copyright © 2016 Carlo Zancanaro <carlo@zancanaro.id.au> ;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2017 Feng Shu <tumashu@163.com> -;;; Copyright © 2017 ng0 <ng0@no-reply.pragmatique.xyz> +;;; Copyright © 2017 ng0 <ng0@infotropique.org> +;;; Copyright © 2014 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -26,6 +27,7 @@ #:use-module (guix git-download) #:use-module (guix utils) #:use-module (guix build-system gnu) + #:use-module (guix build-system glib-or-gtk) #:use-module ((guix licenses) #:prefix license:) #:use-module (gnu packages) #:use-module (gnu packages assembly) @@ -34,6 +36,7 @@ #:use-module (gnu packages gcc) #:use-module (gnu packages glib) #:use-module (gnu packages gtk) + #:use-module (gnu packages libbsd) #:use-module (gnu packages lua) #:use-module (gnu packages ncurses) #:use-module (gnu packages pkg-config) @@ -178,7 +181,7 @@ bindings and many of the powerful features of GNU Emacs.") (sha256 (base32 "0b0az2wvqgvam7w0ns1j8xp2llslm1rx6h7zcsy06a7j0yp257cm")))) - (build-system gnu-build-system) + (build-system glib-or-gtk-build-system) (native-inputs `(("intltool" ,intltool) ("pkg-config" ,pkg-config))) @@ -227,3 +230,58 @@ Wordstar-, EMACS-, Pico, Nedit or vi-like key bindings. e3 can be used on 16, 32, and 64-bit CPUs.") (supported-systems '("x86_64-linux" "i686-linux")) (license license:gpl2+))) + +(define-public mg + (package + (name "mg") + (version "20170401") + (source (origin + (method url-fetch) + (uri (string-append "https://homepage.boetes.org/software/mg/mg-" + version ".tar.gz")) + (sha256 + (base32 + "1arasswgdadbb265rahq3867r9s54jva6k4m3p5n0f8mgjqhhdha")) + (modules '((guix build utils))) + (snippet + '(begin + (substitute* "GNUmakefile" + (("/usr/bin/") "")))))) + (build-system gnu-build-system) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("libbsd" ,libbsd) + ("ncurses" ,ncurses))) + (arguments + ;; No test suite available. + '(#:tests? #f + #:make-flags (list (string-append "prefix=" %output) + "CURSES_LIBS=-lncurses" + "CC=gcc") + #:phases (modify-phases %standard-phases + (delete 'configure) + (add-before 'build 'correct-location-of-difftool + (lambda _ + (substitute* "buffer.c" + (("/usr/bin/diff") + (which "diff"))) + #t)) + (add-before 'install 'patch-tutorial-location + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "mg.1" + (("/usr") (assoc-ref outputs "out"))) + #t)) + (add-after 'install 'install-tutorial + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (doc (string-append out "/share/doc/mg"))) + (install-file "tutorial" doc) + #t)))))) + (home-page "http://homepage.boetes.org/software/mg/") + (synopsis "Microscopic GNU Emacs clone") + (description + "Mg (mg) is a GNU Emacs style editor, with which it is \"broadly\" +compatible. This is a portable version of the mg maintained by the OpenBSD +team.") + (license license:public-domain))) diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm index 4d2ddd9279..5a94ac6198 100644 --- a/gnu/packages/tls.scm +++ b/gnu/packages/tls.scm @@ -131,6 +131,9 @@ coordinating the use of PKCS#11 by different components or libraries living in the same process.") (license license:bsd-3))) + +;; TODO Add net-tools-for-tests to #:disallowed-references when we can afford +;; rebuild GnuTLS (i.e. core-updates). (define-public gnutls (package (name "gnutls") @@ -185,7 +188,7 @@ living in the same process.") "debug" "doc")) ;4.1 MiB of man pages (native-inputs - `(("net-tools" ,net-tools) + `(("net-tools" ,net-tools-for-tests) ("pkg-config" ,pkg-config) ("which" ,which))) (inputs diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm index 0d10af020c..2e17201a5f 100644 --- a/gnu/packages/version-control.scm +++ b/gnu/packages/version-control.scm @@ -785,14 +785,14 @@ following features: (define-public subversion (package (name "subversion") - (version "1.8.17") + (version "1.8.18") (source (origin (method url-fetch) (uri (string-append "https://archive.apache.org/dist/subversion/" "subversion-" version ".tar.bz2")) (sha256 (base32 - "1450fkj1jmxyphqn6cd95z1ykwsabajm9jw4i412qpwss8w9a4fy")))) + "19lpqdrl86mjfdpayhn3f9rkmpb6zs2iny38cnxq6wcj7snh0sz5")))) (build-system gnu-build-system) (arguments '(#:phases diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index d953ca0fd4..7f3f1ce8d6 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -1238,7 +1238,7 @@ other site that youtube-dl supports.") (define-public you-get (package (name "you-get") - (version "0.4.775") + (version "0.4.803") (source (origin (method url-fetch) (uri (string-append @@ -1247,7 +1247,7 @@ other site that youtube-dl supports.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1pjjv42c9bysnj8s3c6v0g6b00lr7b21y8ypibnzd6z0jxlsq7sz")))) + "1rjy809x67dadzvj3midkhcda2kp6rqmbj6rbhjd5f16rvqgn7jp")))) (build-system python-build-system) (arguments ;; no tests diff --git a/gnu/packages/webkit.scm b/gnu/packages/webkit.scm index 8d04242743..5ab27b49f5 100644 --- a/gnu/packages/webkit.scm +++ b/gnu/packages/webkit.scm @@ -53,14 +53,14 @@ (define-public webkitgtk (package (name "webkitgtk") - (version "2.16.5") + (version "2.16.6") (source (origin (method url-fetch) (uri (string-append "https://www.webkitgtk.org/releases/" name "-" version ".tar.xz")) (sha256 (base32 - "1m3xpqs6ddq3m8z6vn83mqh5mkagxlp68vl5qnc7hxcf8brrc0wf")))) + "08abxbhi2n1pfby9f2c20z8mpmbvbs2z7vf0p5ckq4jkz46na8zw")))) (build-system cmake-build-system) (arguments '(#:tests? #f ; no tests diff --git a/gnu/packages/xiph.scm b/gnu/packages/xiph.scm index 5f6f47f305..47274411b5 100644 --- a/gnu/packages/xiph.scm +++ b/gnu/packages/xiph.scm @@ -322,15 +322,14 @@ ogginfo, to obtain information (tags, bitrate, length, etc.) about (define opus (package (name "opus") - (version "1.2") + (version "1.2.1") (source (origin (method url-fetch) - (uri (string-append - "http://downloads.xiph.org/releases/opus/opus-" version - ".tar.gz")) + (uri (string-append "https://archive.mozilla.org/pub/opus/opus-" + version ".tar.gz")) (sha256 (base32 - "1ad9q2g9vivx409jdsslv1hrh5r616qz2pjm96y8ymsigfl4bnvp")))) + "0ch7yzgg4bn1g36bpjsfrgs4n19c84d7wpdida6yzifrrhwx7byg")))) (build-system gnu-build-system) (synopsis "Versatile audio codec") (description diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm index 8155b96665..9acfe03efe 100644 --- a/gnu/packages/xorg.scm +++ b/gnu/packages/xorg.scm @@ -5707,14 +5707,14 @@ to answer a question. Xmessage can also exit after a specified time.") (define-public xterm (package (name "xterm") - (version "322") + (version "330") (source (origin (method url-fetch) (uri (string-append "ftp://ftp.invisible-island.net/xterm/" "xterm-" version ".tgz")) (sha256 (base32 - "1mh9s5g3fs64iimnl7axk0isb5306dyshisxlv5gr8vn7ysl3nws")))) + "1psnfmqd23v9gxj8a98nzrgvymrk0p1whwqi92gy15bbkzrgkvks")))) (build-system gnu-build-system) (arguments '(#:configure-flags '("--enable-wide-chars" "--enable-256-color" |