diff options
Diffstat (limited to 'gnu/packages/patches')
53 files changed, 1580 insertions, 918 deletions
diff --git a/gnu/packages/patches/aegisub-boost68.patch b/gnu/packages/patches/aegisub-boost68.patch new file mode 100644 index 0000000000..013721f3bd --- /dev/null +++ b/gnu/packages/patches/aegisub-boost68.patch @@ -0,0 +1,35 @@ +Source: https://git.archlinux.org/svntogit/community.git/plain/trunk/boost-1.68.patch?h=packages/aegisub +From d8336d2fed73c72d1227b343d6acfb991bc1651b Mon Sep 17 00:00:00 2001 +From: Jan Beich <jbeich@FreeBSD.org> +Date: Mon, 9 Jul 2018 20:15:29 +0000 +Subject: [PATCH] Keep using std::distance after Boost 1.68 + +src/search_replace_engine.cpp:256:14: error: call to + 'distance' is ambiguous + count += distance( + ^~~~~~~~ +/usr/include/c++/v1/iterator:511:1: note: candidate function [with _InputIter = + boost::u32regex_iterator<std::__1::__wrap_iter<const char *> >] +distance(_InputIter __first, _InputIter __last) +^ +/usr/local/include/boost/iterator/distance.hpp:49:9: note: candidate function [with SinglePassIterator = + boost::u32regex_iterator<std::__1::__wrap_iter<const char *> >] + distance(SinglePassIterator first, SinglePassIterator last) + ^ +--- + src/search_replace_engine.cpp | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/search_replace_engine.cpp b/src/search_replace_engine.cpp +index 594c21e5e..14c71680d 100644 +--- a/src/search_replace_engine.cpp ++++ b/src/search_replace_engine.cpp +@@ -253,7 +253,7 @@ bool SearchReplaceEngine::ReplaceAll() { + if (MatchState ms = matches(&diag, 0)) { + auto& diag_field = diag.*get_dialogue_field(settings.field); + std::string const& text = diag_field.get(); +- count += distance( ++ count += std::distance( + boost::u32regex_iterator<std::string::const_iterator>(begin(text), end(text), *ms.re), + boost::u32regex_iterator<std::string::const_iterator>()); + diag_field = u32regex_replace(text, *ms.re, settings.replace_with); diff --git a/gnu/packages/patches/binutils-aarch64-symbol-relocation.patch b/gnu/packages/patches/binutils-aarch64-symbol-relocation.patch deleted file mode 100644 index fbd596862b..0000000000 --- a/gnu/packages/patches/binutils-aarch64-symbol-relocation.patch +++ /dev/null @@ -1,36 +0,0 @@ -Fix a regression in Binutils 2.30 where some symbols are incorrectly assumed -to be addresses: - -https://sourceware.org/bugzilla/show_bug.cgi?id=22764 - -Patch taken from upstream (with ChangeLog entries and tests omitted): - -https://sourceware.org/git/gitweb.cgi?p=binutils-gdb.git;a=commitdiff;h=279b2f94168ee91e02ccd070d27c983fc001fe12 - -diff --git a/bfd/elfnn-aarch64.c b/bfd/elfnn-aarch64.c -index af448f9..2737773 100644 ---- a/bfd/elfnn-aarch64.c -+++ b/bfd/elfnn-aarch64.c -@@ -7189,10 +7189,19 @@ elfNN_aarch64_check_relocs (bfd *abfd, struct bfd_link_info *info, - #if ARCH_SIZE == 64 - case BFD_RELOC_AARCH64_32: - #endif -- if (bfd_link_pic (info) -- && (sec->flags & SEC_ALLOC) != 0 -- && (sec->flags & SEC_READONLY) != 0) -+ if (bfd_link_pic (info) && (sec->flags & SEC_ALLOC) != 0) - { -+ if (h != NULL -+ /* This is an absolute symbol. It represents a value instead -+ of an address. */ -+ && ((h->root.type == bfd_link_hash_defined -+ && bfd_is_abs_section (h->root.u.def.section)) -+ /* This is an undefined symbol. */ -+ || h->root.type == bfd_link_hash_undefined)) -+ break; -+ -+ /* For local symbols, defined global symbols in a non-ABS section, -+ it is assumed that the value is an address. */ - int howto_index = bfd_r_type - BFD_RELOC_AARCH64_RELOC_START; - _bfd_error_handler - /* xgettext:c-format */ diff --git a/gnu/packages/patches/blender-newer-ffmpeg.patch b/gnu/packages/patches/blender-newer-ffmpeg.patch new file mode 100644 index 0000000000..363489bc70 --- /dev/null +++ b/gnu/packages/patches/blender-newer-ffmpeg.patch @@ -0,0 +1,80 @@ +https://sources.debian.org/data/main/b/blender/2.79.b+dfsg0-4/debian/patches/0008-fix_building_with_latest_versions_of_FFmpeg.patch + +From: Bastien Montagne <montagne29@wanadoo.fr> +Date: Tue, 8 May 2018 16:00:52 +0200 +Subject: fix_building_with_latest_versions_of_FFmpeg + +Some years-old deprecated stuff has now been removed. + +Correct solution is probably to use valid defines etc. in own code, but +this is more FFMEPG maintainer task (since it also may change how old +FFMPEG we do support...). +--- + intern/ffmpeg/ffmpeg_compat.h | 39 ++++++++++++++++++++++++++ + source/blender/blenkernel/intern/writeffmpeg.c | 3 +- + 2 files changed, 41 insertions(+), 1 deletion(-) + +diff --git a/intern/ffmpeg/ffmpeg_compat.h b/intern/ffmpeg/ffmpeg_compat.h +index 9c06c8a..f7f437c 100644 +--- a/intern/ffmpeg/ffmpeg_compat.h ++++ b/intern/ffmpeg/ffmpeg_compat.h +@@ -109,6 +109,45 @@ int av_sample_fmt_is_planar(enum AVSampleFormat sample_fmt) + + #endif + ++/* XXX TODO Probably fix to correct modern flags in code? Not sure how old FFMPEG we want to support though, ++ * so for now this will do. */ ++ ++#ifndef FF_MIN_BUFFER_SIZE ++# ifdef AV_INPUT_BUFFER_MIN_SIZE ++# define FF_MIN_BUFFER_SIZE AV_INPUT_BUFFER_MIN_SIZE ++# endif ++#endif ++ ++#ifndef FF_INPUT_BUFFER_PADDING_SIZE ++# ifdef AV_INPUT_BUFFER_PADDING_SIZE ++# define FF_INPUT_BUFFER_PADDING_SIZE AV_INPUT_BUFFER_PADDING_SIZE ++# endif ++#endif ++ ++#ifndef CODEC_FLAG_GLOBAL_HEADER ++# ifdef AV_CODEC_FLAG_GLOBAL_HEADER ++# define CODEC_FLAG_GLOBAL_HEADER AV_CODEC_FLAG_GLOBAL_HEADER ++# endif ++#endif ++ ++#ifndef CODEC_FLAG_GLOBAL_HEADER ++# ifdef AV_CODEC_FLAG_GLOBAL_HEADER ++# define CODEC_FLAG_GLOBAL_HEADER AV_CODEC_FLAG_GLOBAL_HEADER ++# endif ++#endif ++ ++#ifndef CODEC_FLAG_INTERLACED_DCT ++# ifdef AV_CODEC_FLAG_INTERLACED_DCT ++# define CODEC_FLAG_INTERLACED_DCT AV_CODEC_FLAG_INTERLACED_DCT ++# endif ++#endif ++ ++#ifndef CODEC_FLAG_INTERLACED_ME ++# ifdef AV_CODEC_FLAG_INTERLACED_ME ++# define CODEC_FLAG_INTERLACED_ME AV_CODEC_FLAG_INTERLACED_ME ++# endif ++#endif ++ + /* FFmpeg upstream 1.0 is the first who added AV_ prefix. */ + #if LIBAVCODEC_VERSION_INT < AV_VERSION_INT(54, 59, 100) + # define AV_CODEC_ID_NONE CODEC_ID_NONE +diff --git a/source/blender/blenkernel/intern/writeffmpeg.c b/source/blender/blenkernel/intern/writeffmpeg.c +index a19e414..04d508a 100644 +--- a/source/blender/blenkernel/intern/writeffmpeg.c ++++ b/source/blender/blenkernel/intern/writeffmpeg.c +@@ -605,7 +605,8 @@ static AVStream *alloc_video_stream(FFMpegContext *context, RenderData *rd, int + c->rc_buffer_aggressivity = 1.0; + #endif + +- c->me_method = ME_EPZS; ++ /* Deprecated and not doing anything since July 2015, deleted in recent ffmpeg */ ++ //c->me_method = ME_EPZS; + + codec = avcodec_find_encoder(c->codec_id); + if (!codec) diff --git a/gnu/packages/patches/cairo-setjmp-wrapper.patch b/gnu/packages/patches/cairo-setjmp-wrapper.patch new file mode 100644 index 0000000000..bffac6e041 --- /dev/null +++ b/gnu/packages/patches/cairo-setjmp-wrapper.patch @@ -0,0 +1,78 @@ +Revert faulty commit to avoid undefined behaviour: +https://bugs.freedesktop.org/show_bug.cgi?id=104325 + +Taken from this upstream commit: +https://cgit.freedesktop.org/cairo/commit/?h=1.14&id=2acc4382c54bd8239361ceed14423412a343d311 + +diff --git a/src/cairo-bentley-ottmann-rectangular.c b/src/cairo-bentley-ottmann-rectangular.c +index cb2e30c..5541bdc 100644 +--- a/src/cairo-bentley-ottmann-rectangular.c ++++ b/src/cairo-bentley-ottmann-rectangular.c +@@ -593,12 +593,6 @@ sweep_line_insert (sweep_line_t *sweep, rectangle_t *rectangle) + pqueue_push (sweep, rectangle); + } + +-static int +-sweep_line_setjmp (sweep_line_t *sweep_line) +-{ +- return setjmp (sweep_line->unwind); +-} +- + static cairo_status_t + _cairo_bentley_ottmann_tessellate_rectangular (rectangle_t **rectangles, + int num_rectangles, +@@ -615,7 +609,7 @@ _cairo_bentley_ottmann_tessellate_rectangular (rectangle_t **rectangles, + rectangles, num_rectangles, + fill_rule, + do_traps, container); +- if ((status = sweep_line_setjmp (&sweep_line))) ++ if ((status = setjmp (sweep_line.unwind))) + return status; + + rectangle = rectangle_pop_start (&sweep_line); +diff --git a/src/cairo-png.c b/src/cairo-png.c +index e64b14a..068617d 100644 +--- a/src/cairo-png.c ++++ b/src/cairo-png.c +@@ -158,14 +158,6 @@ png_simple_warning_callback (png_structp png, + */ + } + +-static int +-png_setjmp (png_struct *png) +-{ +-#ifdef PNG_SETJMP_SUPPORTED +- return setjmp (png_jmpbuf (png)); +-#endif +- return 0; +-} + + /* Starting with libpng-1.2.30, we must explicitly specify an output_flush_fn. + * Otherwise, we will segfault if we are writing to a stream. */ +@@ -237,8 +229,10 @@ write_png (cairo_surface_t *surface, + goto BAIL4; + } + +- if (png_setjmp (png)) ++#ifdef PNG_SETJMP_SUPPORTED ++ if (setjmp (png_jmpbuf (png))) + goto BAIL4; ++#endif + + png_set_write_fn (png, closure, write_func, png_simple_output_flush_fn); + +@@ -577,11 +571,12 @@ read_png (struct png_read_closure_t *png_closure) + png_set_read_fn (png, png_closure, stream_read_func); + + status = CAIRO_STATUS_SUCCESS; +- +- if (png_setjmp (png)) { ++#ifdef PNG_SETJMP_SUPPORTED ++ if (setjmp (png_jmpbuf (png))) { + surface = _cairo_surface_create_in_error (status); + goto BAIL; + } ++#endif + + png_read_info (png, info); + diff --git a/gnu/packages/patches/casync-renameat2-declaration.patch b/gnu/packages/patches/casync-renameat2-declaration.patch new file mode 100644 index 0000000000..74c2ca7b3c --- /dev/null +++ b/gnu/packages/patches/casync-renameat2-declaration.patch @@ -0,0 +1,27 @@ +Fix build failure on glibc 2.28 where 'renameat2' would end up being +declared twice: <https://github.com/systemd/casync/issues/166>. + +From 625244ca47e8ee1375d2d0092271bfd13b0913ea Mon Sep 17 00:00:00 2001 +From: Daniel Mack <daniel@zonque.org> +Date: Tue, 13 Nov 2018 17:52:48 +0100 +Subject: [PATCH] meson.build: pass -D_GNU_SOURCE when checking for functions + +As described in #166, -D_GNU_SOURCE needs to be passed to the meson function +availability checker. h/t to @tomeon for providing a link to the solution as +well. +--- + meson.build | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/meson.build b/meson.build +index f42ed16..c0f741e 100644 +--- a/meson.build ++++ b/meson.build +@@ -78,6 +78,6 @@ foreach ident : [ + ['copy_file_range', '''#include <sys/syscall.h> + #include <unistd.h>'''], + ] +- have = cc.has_function(ident[0], prefix : ident[1]) ++ have = cc.has_function(ident[0], args : '-D_GNU_SOURCE', prefix : ident[1]) + conf.set10('HAVE_' + ident[0].to_upper(), have) + endforeach diff --git a/gnu/packages/patches/ceph-detect-rocksdb.patch b/gnu/packages/patches/ceph-detect-rocksdb.patch new file mode 100644 index 0000000000..badad6d1b9 --- /dev/null +++ b/gnu/packages/patches/ceph-detect-rocksdb.patch @@ -0,0 +1,24 @@ +Help the build system find system RocksDB. + +Taken from this upstream commit: +https://github.com/ceph/ceph/commit/2ac26bd0e01fd6c82bd59936cf25c25173f7775a + +diff --git a/cmake/modules/Findrocksdb.cmake b/cmake/modules/Findrocksdb.cmake +index f8369f73fc..5926647348 100644 +--- a/cmake/modules/Findrocksdb.cmake ++++ b/cmake/modules/Findrocksdb.cmake +@@ -15,11 +15,11 @@ find_library(ROCKSDB_LIBRARIES rocksdb) + + if(ROCKSDB_INCLUDE_DIR AND EXISTS "${ROCKSDB_INCLUDE_DIR}/rocksdb/version.h") + foreach(ver "MAJOR" "MINOR" "PATCH") +- file(STRINGS "${ROCKSDB_INCLUDE_DIR}/version.h" ROCKSDB_VER_${ver}_LINE ++ file(STRINGS "${ROCKSDB_INCLUDE_DIR}/rocksdb/version.h" ROCKSDB_VER_${ver}_LINE + REGEX "^#define[ \t]+ROCKSDB_${ver}[ \t]+[0-9]+$") + string(REGEX REPLACE "^#define[ \t]+ROCKSDB_${ver}[ \t]+([0-9]+)$" +- "\\1" ROCKSDB_VERSION_${ver} "${ROCKDB_VER_${ver}_LINE}") +- unset(${ROCKDB_VER_${ver}_LINE}) ++ "\\1" ROCKSDB_VERSION_${ver} "${ROCKSDB_VER_${ver}_LINE}") ++ unset(${ROCKSDB_VER_${ver}_LINE}) + endforeach() + set(ROCKSDB_VERSION_STRING + "${ROCKSDB_VERSION_MAJOR}.${ROCKSDB_VERSION_MINOR}.${ROCKSDB_VERSION_PATCH}") diff --git a/gnu/packages/patches/ceph-rocksdb-compat.patch b/gnu/packages/patches/ceph-rocksdb-compat.patch deleted file mode 100644 index 1a3c6b0b23..0000000000 --- a/gnu/packages/patches/ceph-rocksdb-compat.patch +++ /dev/null @@ -1,63 +0,0 @@ -Fix compatibility with newer versions of RocksDB. - -Adapted from this upstream patch, with some additional changes for 12.2: -https://github.com/ceph/ceph/commit/9d73a7121fdb1ae87cb1aa6f7d9d7a13f329ae68 - -diff --git a/src/kv/RocksDBStore.cc b/src/kv/RocksDBStore.cc -index 8660afe1886d..bc0de79e23cb 100644 ---- a/src/kv/RocksDBStore.cc -+++ b/src/kv/RocksDBStore.cc -@@ -505,7 +505,7 @@ - // considering performance overhead, default is disabled - if (g_conf->rocksdb_perf) { - rocksdb::SetPerfLevel(rocksdb::PerfLevel::kEnableTimeExceptForMutex); -- rocksdb::perf_context.Reset(); -+ rocksdb::get_perf_context()->Reset(); - } - - RocksDBTransactionImpl * _t = -@@ -532,13 +532,13 @@ - utime_t write_wal_time; - utime_t write_pre_and_post_process_time; - write_wal_time.set_from_double( -- static_cast<double>(rocksdb::perf_context.write_wal_time)/1000000000); -+ static_cast<double>(rocksdb::get_perf_context()->write_wal_time)/1000000000); - write_memtable_time.set_from_double( -- static_cast<double>(rocksdb::perf_context.write_memtable_time)/1000000000); -+ static_cast<double>(rocksdb::get_perf_context()->write_memtable_time)/1000000000); - write_delay_time.set_from_double( -- static_cast<double>(rocksdb::perf_context.write_delay_time)/1000000000); -+ static_cast<double>(rocksdb::get_perf_context()->write_delay_time)/1000000000); - write_pre_and_post_process_time.set_from_double( -- static_cast<double>(rocksdb::perf_context.write_pre_and_post_process_time)/1000000000); -+ static_cast<double>(rocksdb::get_perf_context()->write_pre_and_post_process_time)/1000000000); - logger->tinc(l_rocksdb_write_memtable_time, write_memtable_time); - logger->tinc(l_rocksdb_write_delay_time, write_delay_time); - logger->tinc(l_rocksdb_write_wal_time, write_wal_time); -@@ -558,7 +558,7 @@ - // considering performance overhead, default is disabled - if (g_conf->rocksdb_perf) { - rocksdb::SetPerfLevel(rocksdb::PerfLevel::kEnableTimeExceptForMutex); -- rocksdb::perf_context.Reset(); -+ rocksdb::get_perf_context()->Reset(); - } - - RocksDBTransactionImpl * _t = -@@ -586,13 +586,13 @@ - utime_t write_wal_time; - utime_t write_pre_and_post_process_time; - write_wal_time.set_from_double( -- static_cast<double>(rocksdb::perf_context.write_wal_time)/1000000000); -+ static_cast<double>(rocksdb::get_perf_context()->write_wal_time)/1000000000); - write_memtable_time.set_from_double( -- static_cast<double>(rocksdb::perf_context.write_memtable_time)/1000000000); -+ static_cast<double>(rocksdb::get_perf_context()->write_memtable_time)/1000000000); - write_delay_time.set_from_double( -- static_cast<double>(rocksdb::perf_context.write_delay_time)/1000000000); -+ static_cast<double>(rocksdb::get_perf_context()->write_delay_time)/1000000000); - write_pre_and_post_process_time.set_from_double( -- static_cast<double>(rocksdb::perf_context.write_pre_and_post_process_time)/1000000000); -+ static_cast<double>(rocksdb::get_perf_context()->write_pre_and_post_process_time)/1000000000); - logger->tinc(l_rocksdb_write_memtable_time, write_memtable_time); - logger->tinc(l_rocksdb_write_delay_time, write_delay_time); - logger->tinc(l_rocksdb_write_wal_time, write_wal_time); diff --git a/gnu/packages/patches/ceph-skip-unittest_blockdev.patch b/gnu/packages/patches/ceph-skip-unittest_blockdev.patch index 43b9984862..407bd93278 100644 --- a/gnu/packages/patches/ceph-skip-unittest_blockdev.patch +++ b/gnu/packages/patches/ceph-skip-unittest_blockdev.patch @@ -4,25 +4,21 @@ This test tries to walk a sysfs path and hits a null pointer exception. Expected: (dir) != (nullptr), actual: NULL vs 8-byte object <00-00 00-00 00-00 00-00> diff --git a/src/test/common/CMakeLists.txt b/src/test/common/CMakeLists.txt -index 5172663898..ac84085eaa 100644 --- a/src/test/common/CMakeLists.txt +++ b/src/test/common/CMakeLists.txt -@@ -12,15 +12,6 @@ target_link_libraries(get_command_descriptions +@@ -12,15 +12,6 @@ ${CMAKE_DL_LIBS} ) -if(HAVE_BLKID) --# unittest_blkdev --add_executable(unittest_blkdev -- test_blkdev.cc -- ) --add_ceph_unittest(unittest_blkdev ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/unittest_blkdev) --target_link_libraries(unittest_blkdev global ${BLKID_LIBRARIES}) --endif(HAVE_BLKID) +- # unittest_blkdev +- add_executable(unittest_blkdev +- test_blkdev.cc +- ) +- add_ceph_unittest(unittest_blkdev) +- target_link_libraries(unittest_blkdev ceph-common ${BLKID_LIBRARIES}) +-endif() - # unittest_bloom_filter add_executable(unittest_bloom_filter test_bloom_filter.cc --- -2.11.1 - diff --git a/gnu/packages/patches/ceph-volume-respect-PATH.patch b/gnu/packages/patches/ceph-volume-respect-PATH.patch new file mode 100644 index 0000000000..08a9a15ddd --- /dev/null +++ b/gnu/packages/patches/ceph-volume-respect-PATH.patch @@ -0,0 +1,22 @@ +Look for required tools in $PATH instead of just a handful locations. + +diff --git a/src/ceph-volume/ceph_volume/util/system.py b/src/ceph-volume/ceph_volume/util/system.py +index b637f023a4..14516e1c65 100644 +--- a/src/ceph-volume/ceph_volume/util/system.py ++++ b/src/ceph-volume/ceph_volume/util/system.py +@@ -33,14 +33,7 @@ def generate_uuid(): + + def which(executable): + """find the location of an executable""" +- locations = ( +- '/usr/local/bin', +- '/bin', +- '/usr/bin', +- '/usr/local/sbin', +- '/usr/sbin', +- '/sbin', +- ) ++ locations = os.getenv('PATH').split(':') + + for location in locations: + executable_path = os.path.join(location, executable) diff --git a/gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch b/gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch new file mode 100644 index 0000000000..cfb09a8ce3 --- /dev/null +++ b/gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch @@ -0,0 +1,46 @@ +From d9d97cac3702b99a00cd113de98c41eb535d47ed Mon Sep 17 00:00:00 2001 +From: Efraim Flashner <efraim@flashner.co.il> +Date: Sun, 14 Oct 2018 12:11:30 +0300 +Subject: [PATCH] patch modified from the gcc patch series, also dealing with + ustat. + +--- + .../sanitizer_platform_limits_posix.cc | 15 +++++++++++++-- + 1 file changed, 13 insertions(+), 2 deletions(-) + +diff --git a/lib/sanitizer_common/sanitizer_platform_limits_posix.cc b/lib/sanitizer_common/sanitizer_platform_limits_posix.cc +index 29fea6e..570b9a5 100644 +--- a/lib/sanitizer_common/sanitizer_platform_limits_posix.cc ++++ b/lib/sanitizer_common/sanitizer_platform_limits_posix.cc +@@ -129,7 +129,6 @@ + #include <sys/statvfs.h> + #include <sys/timex.h> + #include <sys/user.h> +-#include <sys/ustat.h> + #include <linux/cyclades.h> + #include <linux/if_eql.h> + #include <linux/if_plip.h> +@@ -222,7 +221,19 @@ namespace __sanitizer { + #endif // SANITIZER_LINUX || SANITIZER_FREEBSD + + #if SANITIZER_LINUX && !SANITIZER_ANDROID +- unsigned struct_ustat_sz = sizeof(struct ustat); ++ // Use pre-computed size of struct ustat to avoid <sys/ustat.h> which ++ // has been removed from glibc 2.28. ++#if defined(__aarch64__) || defined(__s390x__) || defined (__mips64) \ ++ || defined(__powerpc64__) || defined(__arch64__) || defined(__sparcv9) \ ++ || defined(__x86_64__) ++#define SIZEOF_STRUCT_USTAT 32 ++#elif defined(__arm__) || defined(__i386__) || defined(__mips__) \ ++ || defined(__powerpc__) || defined(__s390__) ++#define SIZEOF_STRUCT_USTAT 20 ++#else ++#error Unknown size of struct ustat ++#endif ++ unsigned struct_ustat_sz = SIZEOF_STRUCT_USTAT; + unsigned struct_rlimit64_sz = sizeof(struct rlimit64); + unsigned struct_statvfs64_sz = sizeof(struct statvfs64); + #endif // SANITIZER_LINUX && !SANITIZER_ANDROID +-- +2.19.1 + diff --git a/gnu/packages/patches/doxygen-gcc-ice.patch b/gnu/packages/patches/doxygen-gcc-ice.patch deleted file mode 100644 index fbfedcb7ab..0000000000 --- a/gnu/packages/patches/doxygen-gcc-ice.patch +++ /dev/null @@ -1,25 +0,0 @@ -Work around this GCC ICE: <https://bugs.gnu.org/31708>. It shows up -only when doing native compiles on armhf-linux. - -Yes it's a terrible patch, but it does the job. - ---- doxygen-1.8.13/qtools/qutfcodec.cpp 1970-01-01 01:00:00.000000000 +0100 -+++ doxygen-1.8.13/qtools/qutfcodec.cpp 2018-06-08 14:14:29.614009929 +0200 -@@ -189,7 +189,7 @@ int QUtf16Codec::heuristicContentMatch(c - } - - -- -+volatile const void *bomPointer = &QChar::byteOrderMark; - - class QUtf16Encoder : public QTextEncoder { - bool headerdone; -@@ -209,7 +209,7 @@ public: - headerdone = TRUE; - len_in_out = (1+uc.length())*(int)sizeof(QChar); - QCString d(len_in_out); -- memcpy(d.rawData(),&QChar::byteOrderMark,sizeof(QChar)); -+ memcpy(d.rawData(),(void *)bomPointer,sizeof(QChar)); - memcpy(d.rawData()+sizeof(QChar),uc.unicode(),uc.length()*sizeof(QChar)); - return d; - } diff --git a/gnu/packages/patches/emacs-pdf-tools-poppler.patch b/gnu/packages/patches/emacs-pdf-tools-poppler.patch new file mode 100644 index 0000000000..0477508fa9 --- /dev/null +++ b/gnu/packages/patches/emacs-pdf-tools-poppler.patch @@ -0,0 +1,41 @@ +Fix build issue with recent Poppler: + <https://github.com/politza/pdf-tools/issues/372>. + +This combines upstream commits +6cd76dec9aece2a8daa90f17ab77fbf773157a1d..50a5297b82e26cfd52f6c00645ddc1057099d6a7 +for this file. + +diff --git a/server/poppler-hack.cc b/server/poppler-hack.cc +index 0c62f73..427f9df 100644 +--- a/server/poppler-hack.cc ++++ b/server/poppler-hack.cc +@@ -51,7 +51,10 @@ GType poppler_annot_markup_get_type (void) G_GNUC_CONST; + double y2; + }; + +- char *_xpoppler_goo_string_to_utf8(GooString *s) ++ // This function does not modify its argument s, but for ++ // compatibility reasons (e.g. getLength in GooString.h before 2015) ++ // with older poppler code, it can't be declared as such. ++ char *_xpoppler_goo_string_to_utf8(/* const */ GooString *s) + { + char *result; + +@@ -85,7 +88,7 @@ GType poppler_annot_markup_get_type (void) G_GNUC_CONST; + // Set the rectangle of an annotation. It was first added in v0.26. + void xpoppler_annot_set_rectangle (PopplerAnnot *a, PopplerRectangle *rectangle) + { +- GooString *state = a->annot->getAppearState (); ++ GooString *state = (GooString*) a->annot->getAppearState (); + char *ustate = _xpoppler_goo_string_to_utf8 (state); + + a->annot->setRect (rectangle->x1, rectangle->y1, +@@ -105,7 +108,7 @@ GType poppler_annot_markup_get_type (void) G_GNUC_CONST; + g_return_val_if_fail (POPPLER_IS_ANNOT_MARKUP (poppler_annot), NULL); + + annot = static_cast<AnnotMarkup *>(POPPLER_ANNOT (poppler_annot)->annot); +- text = annot->getDate (); ++ text = (GooString*) annot->getDate (); + + return text ? _xpoppler_goo_string_to_utf8 (text) : NULL; + } diff --git a/gnu/packages/patches/findutils-gnulib-libio.patch b/gnu/packages/patches/findutils-gnulib-libio.patch new file mode 100644 index 0000000000..79f9fd914d --- /dev/null +++ b/gnu/packages/patches/findutils-gnulib-libio.patch @@ -0,0 +1,114 @@ +Adjust to removal of libio interface in glibc 2.28. + +Based on this gnulib commit: +https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=4af4a4a71827c0bc5e0ec67af23edef4f15cee8e + +diff --git a/gl/lib/fflush.c b/gl/lib/fflush.c +index 5ae3e41..7a82470 100644 +--- a/gl/lib/fflush.c ++++ b/gl/lib/fflush.c +@@ -33,7 +33,7 @@ + #undef fflush + + +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + + /* Clear the stream's ungetc buffer, preserving the value of ftello (fp). */ + static void +@@ -72,7 +72,7 @@ clear_ungetc_buffer (FILE *fp) + + #endif + +-#if ! (defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */) ++#if ! (defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */) + + # if (defined __sferror || defined __DragonFly__ || defined __ANDROID__) && defined __SNPT + /* FreeBSD, NetBSD, OpenBSD, DragonFly, Mac OS X, Cygwin, Android */ +@@ -148,7 +148,7 @@ rpl_fflush (FILE *stream) + if (stream == NULL || ! freading (stream)) + return fflush (stream); + +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + + clear_ungetc_buffer_preserving_position (stream); + +diff --git a/gl/lib/fpurge.c b/gl/lib/fpurge.c +index f313b22..ecdf82d 100644 +--- a/gl/lib/fpurge.c ++++ b/gl/lib/fpurge.c +@@ -62,7 +62,7 @@ fpurge (FILE *fp) + /* Most systems provide FILE as a struct and the necessary bitmask in + <stdio.h>, because they need it for implementing getc() and putc() as + fast macros. */ +-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + fp->_IO_read_end = fp->_IO_read_ptr; + fp->_IO_write_ptr = fp->_IO_write_base; + /* Avoid memory leak when there is an active ungetc buffer. */ +diff --git a/gl/lib/freadahead.c b/gl/lib/freadahead.c +index 094daab..3f8101e 100644 +--- a/gl/lib/freadahead.c ++++ b/gl/lib/freadahead.c +@@ -25,7 +25,7 @@ + size_t + freadahead (FILE *fp) + { +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + if (fp->_IO_write_ptr > fp->_IO_write_base) + return 0; + return (fp->_IO_read_end - fp->_IO_read_ptr) +diff --git a/gl/lib/freading.c b/gl/lib/freading.c +index 0512b19..8c48fe4 100644 +--- a/gl/lib/freading.c ++++ b/gl/lib/freading.c +@@ -31,7 +31,7 @@ freading (FILE *fp) + /* Most systems provide FILE as a struct and the necessary bitmask in + <stdio.h>, because they need it for implementing getc() and putc() as + fast macros. */ +-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + return ((fp->_flags & _IO_NO_WRITES) != 0 + || ((fp->_flags & (_IO_NO_READS | _IO_CURRENTLY_PUTTING)) == 0 + && fp->_IO_read_base != NULL)); +diff --git a/gl/lib/fseeko.c b/gl/lib/fseeko.c +index 1c65d2a..9026408 100644 +--- a/gl/lib/fseeko.c ++++ b/gl/lib/fseeko.c +@@ -47,7 +47,7 @@ fseeko (FILE *fp, off_t offset, int whence) + #endif + + /* These tests are based on fpurge.c. */ +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + if (fp->_IO_read_end == fp->_IO_read_ptr + && fp->_IO_write_ptr == fp->_IO_write_base + && fp->_IO_save_base == NULL) +@@ -123,7 +123,7 @@ fseeko (FILE *fp, off_t offset, int whence) + return -1; + } + +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + fp->_flags &= ~_IO_EOF_SEEN; + fp->_offset = pos; + #elif defined __sferror || defined __DragonFly__ || defined __ANDROID__ +diff --git a/gl/lib/stdio-impl.h b/gl/lib/stdio-impl.h +index 502d891..ea38ee2 100644 +--- a/gl/lib/stdio-impl.h ++++ b/gl/lib/stdio-impl.h +@@ -18,6 +18,12 @@ + the same implementation of stdio extension API, except that some fields + have different naming conventions, or their access requires some casts. */ + ++/* Glibc 2.28 made _IO_IN_BACKUP private. For now, work around this ++ problem by defining it ourselves. FIXME: Do not rely on glibc ++ internals. */ ++#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN ++# define _IO_IN_BACKUP 0x100 ++#endif + + /* BSD stdio derived implementations. */ + diff --git a/gnu/packages/patches/findutils-makedev.patch b/gnu/packages/patches/findutils-makedev.patch new file mode 100644 index 0000000000..2f16c625d8 --- /dev/null +++ b/gnu/packages/patches/findutils-makedev.patch @@ -0,0 +1,22 @@ +Include <sys/sysmacros.h> for "makedev". + +Taken from this gnulib commit: +https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=4da63c5881f60f71999a943612da9112232b9161 + +diff --git a/gl/lib/mountlist.c b/gl/lib/mountlist.c +index bb4e4ee21..cf4020e2a 100644 +--- a/gl/lib/mountlist.c ++++ b/gl/lib/mountlist.c +@@ -37,6 +37,12 @@ + # include <sys/param.h> + #endif + ++#if MAJOR_IN_MKDEV ++# include <sys/mkdev.h> ++#elif MAJOR_IN_SYSMACROS ++# include <sys/sysmacros.h> ++#endif ++ + #if defined MOUNTED_GETFSSTAT /* OSF_1 and Darwin1.3.x */ + # if HAVE_SYS_UCRED_H + # include <grp.h> /* needed on OSF V4.0 for definition of NGROUPS, diff --git a/gnu/packages/patches/freetype-CVE-2018-6942.patch b/gnu/packages/patches/freetype-CVE-2018-6942.patch deleted file mode 100644 index 680f357765..0000000000 --- a/gnu/packages/patches/freetype-CVE-2018-6942.patch +++ /dev/null @@ -1,31 +0,0 @@ -Fix CVE-2018-6942: - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-6942 -https://people.canonical.com/~ubuntu-security/cve/2018/CVE-2018-6942.html - -Copied from upstream (ChangeLog section removed): -https://git.savannah.gnu.org/cgit/freetype/freetype2.git/commit/?id=29c759284e305ec428703c9a5831d0b1fc3497ef - -diff --git a/src/truetype/ttinterp.c b/src/truetype/ttinterp.c -index d855aaa..551f14a 100644 ---- a/src/truetype/ttinterp.c -+++ b/src/truetype/ttinterp.c -@@ -7532,8 +7532,16 @@ - return; - } - -- for ( i = 0; i < num_axes; i++ ) -- args[i] = coords[i] >> 2; /* convert 16.16 to 2.14 format */ -+ if ( coords ) -+ { -+ for ( i = 0; i < num_axes; i++ ) -+ args[i] = coords[i] >> 2; /* convert 16.16 to 2.14 format */ -+ } -+ else -+ { -+ for ( i = 0; i < num_axes; i++ ) -+ args[i] = 0; -+ } - } - - diff --git a/gnu/packages/patches/gcc-4.9-libsanitizer-ustat.patch b/gnu/packages/patches/gcc-4.9-libsanitizer-ustat.patch new file mode 100644 index 0000000000..795881ab9b --- /dev/null +++ b/gnu/packages/patches/gcc-4.9-libsanitizer-ustat.patch @@ -0,0 +1,37 @@ +Remove use of deprecated ustat interface in glibc 2.28: +https://gcc.gnu.org/bugzilla/show_bug.cgi?id=85835 + +Adapted to GCC 4 series from this upstream patch: +https://gcc.gnu.org/viewcvs/gcc?view=revision&revision=260684 + +--- a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc ++++ b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc +@@ -81,7 +81,6 @@ + #include <sys/statvfs.h> + #include <sys/timex.h> + #include <sys/user.h> +-#include <sys/ustat.h> + #include <linux/cyclades.h> + #include <linux/if_eql.h> + #include <linux/if_plip.h> +@@ -163,7 +162,19 @@ + unsigned struct_old_utsname_sz = sizeof(struct old_utsname); + unsigned struct_oldold_utsname_sz = sizeof(struct oldold_utsname); + unsigned struct_itimerspec_sz = sizeof(struct itimerspec); +- unsigned struct_ustat_sz = sizeof(struct ustat); ++ // Use pre-computed size of struct ustat to avoid <sys/ustat.h> which ++ // has been removed from glibc 2.28. ++#if defined(__aarch64__) || defined(__s390x__) || defined (__mips64) \ ++ || defined(__powerpc64__) || defined(__arch64__) || defined(__sparcv9) \ ++ || defined(__x86_64__) ++#define SIZEOF_STRUCT_USTAT 32 ++#elif defined(__arm__) || defined(__i386__) || defined(__mips__) \ ++ || defined(__powerpc__) || defined(__s390__) ++#define SIZEOF_STRUCT_USTAT 20 ++#else ++#error Unknown size of struct ustat ++#endif ++ unsigned struct_ustat_sz = SIZEOF_STRUCT_USTAT; + #endif // SANITIZER_LINUX + + #if SANITIZER_LINUX && !SANITIZER_ANDROID diff --git a/gnu/packages/patches/gcc-libsanitizer-ustat.patch b/gnu/packages/patches/gcc-libsanitizer-ustat.patch new file mode 100644 index 0000000000..a4e0c6affa --- /dev/null +++ b/gnu/packages/patches/gcc-libsanitizer-ustat.patch @@ -0,0 +1,41 @@ +Remove use of deprecated ustat interface in glibc 2.28: + +https://gcc.gnu.org/bugzilla/show_bug.cgi?id=85835 + +Taken from upstream: + +https://gcc.gnu.org/viewcvs/gcc?view=revision&revision=260684 + +diff --git a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc +index 858bb2184505..de18e56d11cf 100644 +--- a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc ++++ b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc +@@ -157,7 +157,6 @@ typedef struct user_fpregs elf_fpregset_t; + # include <sys/procfs.h> + #endif + #include <sys/user.h> +-#include <sys/ustat.h> + #include <linux/cyclades.h> + #include <linux/if_eql.h> + #include <linux/if_plip.h> +@@ -250,7 +249,19 @@ namespace __sanitizer { + #endif // SANITIZER_LINUX || SANITIZER_FREEBSD + + #if SANITIZER_LINUX && !SANITIZER_ANDROID +- unsigned struct_ustat_sz = sizeof(struct ustat); ++ // Use pre-computed size of struct ustat to avoid <sys/ustat.h> which ++ // has been removed from glibc 2.28. ++#if defined(__aarch64__) || defined(__s390x__) || defined (__mips64) \ ++ || defined(__powerpc64__) || defined(__arch64__) || defined(__sparcv9) \ ++ || defined(__x86_64__) ++#define SIZEOF_STRUCT_USTAT 32 ++#elif defined(__arm__) || defined(__i386__) || defined(__mips__) \ ++ || defined(__powerpc__) || defined(__s390__) ++#define SIZEOF_STRUCT_USTAT 20 ++#else ++#error Unknown size of struct ustat ++#endif ++ unsigned struct_ustat_sz = SIZEOF_STRUCT_USTAT; + unsigned struct_rlimit64_sz = sizeof(struct rlimit64); + unsigned struct_statvfs64_sz = sizeof(struct statvfs64); + #endif // SANITIZER_LINUX && !SANITIZER_ANDROID diff --git a/gnu/packages/patches/gcc-strmov-store-file-names.patch b/gnu/packages/patches/gcc-strmov-store-file-names.patch index 9f9162855d..7358de3326 100644 --- a/gnu/packages/patches/gcc-strmov-store-file-names.patch +++ b/gnu/packages/patches/gcc-strmov-store-file-names.patch @@ -15,7 +15,7 @@ and <https://bugs.gnu.org/30395>. --- gcc-5.3.0/gcc/builtins.c 2016-10-18 10:50:46.080616285 +0200 +++ gcc-5.3.0/gcc/builtins.c 2016-11-09 15:26:43.693042737 +0100 -@@ -3192,6 +3192,54 @@ determine_block_size (tree len, rtx len_ +@@ -3192,6 +3192,58 @@ determine_block_size (tree len, rtx len_ GET_MODE_MASK (GET_MODE (len_rtx))); } @@ -35,9 +35,13 @@ and <https://bugs.gnu.org/30395>. + if (TREE_CODE (str) == VAR_DECL + && TREE_STATIC (str) + && TREE_READONLY (str)) -+ /* STR may be a 'static const' variable whose initial value -+ is a string constant. See <https://bugs.gnu.org/30395>. */ -+ str = DECL_INITIAL (str); ++ { ++ /* STR may be a 'static const' variable whose initial value ++ is a string constant. See <https://bugs.gnu.org/30395>. */ ++ str = DECL_INITIAL (str); ++ if (str == NULL_TREE) ++ return false; ++ } + + if (TREE_CODE (str) != STRING_CST) + return false; diff --git a/gnu/packages/patches/ghostscript-runpath.patch b/gnu/packages/patches/ghostscript-runpath.patch deleted file mode 100644 index 9f161e45b3..0000000000 --- a/gnu/packages/patches/ghostscript-runpath.patch +++ /dev/null @@ -1,18 +0,0 @@ -diff --git a/base/unix-dll.mak b/base/unix-dll.mak -index 9d57a99..36ef1ff 100644 ---- a/base/unix-dll.mak -+++ b/base/unix-dll.mak -@@ -171,11 +171,11 @@ gpdl-so-links-subtarget: $(GPDL_SO) $(UNIX_DLL_MAK) $(MAKEDIRS) - # Build the small Ghostscript loaders, with Gtk+ and without - $(GSSOC_XE): gs-so-links-subtarget $(PSSRC)$(SOC_LOADER) $(UNIX_DLL_MAK) $(MAKEDIRS) - $(GLCC) -g -o $(GSSOC_XE) $(PSSRC)dxmainc.c \ -- -L$(BINDIR) -l$(GS_SO_BASE) -+ -L$(BINDIR) -l$(GS_SO_BASE) -Wl,-rpath=$(libdir) - - $(GSSOX_XE): gs-so-links-subtarget $(PSSRC)$(SOC_LOADER) $(UNIX_DLL_MAK) $(MAKEDIRS) - $(GLCC) -g $(SOC_CFLAGS) -o $(GSSOX_XE) $(PSSRC)$(SOC_LOADER) \ -- -L$(BINDIR) -l$(GS_SO_BASE) $(SOC_LIBS) -+ -L$(BINDIR) -l$(GS_SO_BASE) $(SOC_LIBS) -Wl,-rpath=$(libdir) - - $(PCLSOC_XE): gpcl6-so-links-subtarget $(PLSRC)$(REALMAIN_SRC).c $(UNIX_DLL_MAK) $(MAKEDIRS) - $(GLCC) -g -o $(PCLSOC_XE) $(PLSRC)$(REALMAIN_SRC).c -L$(BINDIR) -l$(PCL_SO_BASE) diff --git a/gnu/packages/patches/glibc-2.28-git-fixes.patch b/gnu/packages/patches/glibc-2.28-git-fixes.patch new file mode 100644 index 0000000000..7e370ef0b1 --- /dev/null +++ b/gnu/packages/patches/glibc-2.28-git-fixes.patch @@ -0,0 +1,248 @@ +This file contains fixes from the "release/2.28/master" branch: +https://sourceware.org/git/?p=glibc.git;a=shortlog;h=refs/heads/release/2.28/master + +Currently we have these commits (sans tests and ChangeLog updates): +7f11842e7483da7aa9fa3031be122021978ef600 +726e1554ce4db5e35af41cb0110c54c5e1232054 +4b25485f03158959cff45379eecc1d73c7dcdd11 +d05b05d1570ba3ae354a2f5a3cfeefb373b09979 +bfcfa22589f2b4277a65e60c6b736b6bbfbd87d0 +2f498f3d140ab5152bd784df2be7af7d9c5e63ed + +diff --git a/htl/Versions b/htl/Versions +index 6a63a1b8a1..c5a616da10 100644 +--- a/htl/Versions ++++ b/htl/Versions +@@ -150,6 +150,8 @@ libpthread { + __cthread_keycreate; + __cthread_getspecific; + __cthread_setspecific; ++ __pthread_getspecific; ++ __pthread_setspecific; + __pthread_getattr_np; + __pthread_attr_getstack; + } + +diff --git a/sysdeps/htl/pt-getspecific.c b/sysdeps/htl/pt-getspecific.c +index a0227a67f6..64ddf9551a 100644 +--- a/sysdeps/htl/pt-getspecific.c ++++ b/sysdeps/htl/pt-getspecific.c +@@ -36,3 +36,4 @@ __pthread_getspecific (pthread_key_t key) + return self->thread_specifics[key]; + } + strong_alias (__pthread_getspecific, pthread_getspecific); ++hidden_def (__pthread_getspecific) +diff --git a/sysdeps/htl/pt-setspecific.c b/sysdeps/htl/pt-setspecific.c +index a46a12f157..02aff417ef 100644 +--- a/sysdeps/htl/pt-setspecific.c ++++ b/sysdeps/htl/pt-setspecific.c +@@ -48,3 +48,4 @@ __pthread_setspecific (pthread_key_t key, const void *value) + return 0; + } + strong_alias (__pthread_setspecific, pthread_setspecific); ++hidden_def (__pthread_setspecific) +diff --git a/sysdeps/htl/pthreadP.h b/sysdeps/htl/pthreadP.h +index 132ac1718e..71c2fcd9c6 100644 +--- a/sysdeps/htl/pthreadP.h ++++ b/sysdeps/htl/pthreadP.h +@@ -68,6 +68,8 @@ struct __pthread_cancelation_handler **___pthread_get_cleanup_stack (void) attri + + #if IS_IN (libpthread) + hidden_proto (__pthread_key_create) ++hidden_proto (__pthread_getspecific) ++hidden_proto (__pthread_setspecific) + hidden_proto (_pthread_mutex_init) + #endif + +diff --git a/sysdeps/unix/sysv/linux/getdents64.c b/sysdeps/unix/sysv/linux/getdents64.c +index 3bde0cf4f0..bc140b5a7f 100644 +--- a/sysdeps/unix/sysv/linux/getdents64.c ++++ b/sysdeps/unix/sysv/linux/getdents64.c +@@ -33,41 +33,80 @@ strong_alias (__getdents64, __getdents) + # include <shlib-compat.h> + + # if SHLIB_COMPAT(libc, GLIBC_2_1, GLIBC_2_2) +-# include <olddirent.h> ++# include <olddirent.h> ++# include <unistd.h> + +-/* kernel definition of as of 3.2. */ +-struct compat_linux_dirent ++static ssize_t ++handle_overflow (int fd, __off64_t offset, ssize_t count) + { +- /* Both d_ino and d_off are compat_ulong_t which are defined in all +- architectures as 'u32'. */ +- uint32_t d_ino; +- uint32_t d_off; +- unsigned short d_reclen; +- char d_name[1]; +-}; ++ /* If this is the first entry in the buffer, we can report the ++ error. */ ++ if (count == 0) ++ { ++ __set_errno (EOVERFLOW); ++ return -1; ++ } ++ ++ /* Otherwise, seek to the overflowing entry, so that the next call ++ will report the error, and return the data read so far.. */ ++ if (__lseek64 (fd, offset, SEEK_SET) != 0) ++ return -1; ++ return count; ++} + + ssize_t + __old_getdents64 (int fd, char *buf, size_t nbytes) + { +- ssize_t retval = INLINE_SYSCALL_CALL (getdents, fd, buf, nbytes); ++ /* We do not move the individual directory entries. This is only ++ possible if the target type (struct __old_dirent64) is smaller ++ than the source type. */ ++ _Static_assert (offsetof (struct __old_dirent64, d_name) ++ <= offsetof (struct dirent64, d_name), ++ "__old_dirent64 is larger than dirent64"); ++ _Static_assert (__alignof__ (struct __old_dirent64) ++ <= __alignof__ (struct dirent64), ++ "alignment of __old_dirent64 is larger than dirent64"); + +- /* The kernel added the d_type value after the name. Change this now. */ +- if (retval != -1) ++ ssize_t retval = INLINE_SYSCALL_CALL (getdents64, fd, buf, nbytes); ++ if (retval > 0) + { +- union +- { +- struct compat_linux_dirent k; +- struct dirent u; +- } *kbuf = (void *) buf; +- +- while ((char *) kbuf < buf + retval) ++ char *p = buf; ++ char *end = buf + retval; ++ while (p < end) + { +- char d_type = *((char *) kbuf + kbuf->k.d_reclen - 1); +- memmove (kbuf->u.d_name, kbuf->k.d_name, +- strlen (kbuf->k.d_name) + 1); +- kbuf->u.d_type = d_type; ++ struct dirent64 *source = (struct dirent64 *) p; ++ ++ /* Copy out the fixed-size data. */ ++ __ino_t ino = source->d_ino; ++ __off64_t offset = source->d_off; ++ unsigned int reclen = source->d_reclen; ++ unsigned char type = source->d_type; ++ ++ /* Check for ino_t overflow. */ ++ if (__glibc_unlikely (ino != source->d_ino)) ++ return handle_overflow (fd, offset, p - buf); ++ ++ /* Convert to the target layout. Use a separate struct and ++ memcpy to side-step aliasing issues. */ ++ struct __old_dirent64 result; ++ result.d_ino = ino; ++ result.d_off = offset; ++ result.d_reclen = reclen; ++ result.d_type = type; ++ ++ /* Write the fixed-sized part of the result to the ++ buffer. */ ++ size_t result_name_offset = offsetof (struct __old_dirent64, d_name); ++ memcpy (p, &result, result_name_offset); ++ ++ /* Adjust the position of the name if necessary. Copy ++ everything until the end of the record, including the ++ terminating NUL byte. */ ++ if (result_name_offset != offsetof (struct dirent64, d_name)) ++ memmove (p + result_name_offset, source->d_name, ++ reclen - offsetof (struct dirent64, d_name)); + +- kbuf = (void *) ((char *) kbuf + kbuf->k.d_reclen); ++ p += reclen; + } + } + return retval; + +diff --git a/misc/error.c b/misc/error.c +index b4e8b6c938..03378e2f2a 100644 +--- a/misc/error.c ++++ b/misc/error.c +@@ -319,6 +319,7 @@ error (int status, int errnum, const char *message, ...) + + va_start (args, message); + error_tail (status, errnum, message, args); ++ va_end (args); + + #ifdef _LIBC + _IO_funlockfile (stderr); +@@ -390,6 +391,7 @@ error_at_line (int status, int errnum, const char *file_name, + + va_start (args, message); + error_tail (status, errnum, message, args); ++ va_end (args); + + #ifdef _LIBC + _IO_funlockfile (stderr); + +diff --git a/nscd/nscd_conf.c b/nscd/nscd_conf.c +index 265a02434d..7293b795b6 100644 +--- a/nscd/nscd_conf.c ++++ b/nscd/nscd_conf.c +@@ -190,7 +190,10 @@ nscd_parse_file (const char *fname, struct database_dyn dbs[lastdb]) + if (!arg1) + error (0, 0, _("Must specify user name for server-user option")); + else +- server_user = xstrdup (arg1); ++ { ++ free ((char *) server_user); ++ server_user = xstrdup (arg1); ++ } + } + else if (strcmp (entry, "stat-user") == 0) + { +@@ -198,6 +201,7 @@ nscd_parse_file (const char *fname, struct database_dyn dbs[lastdb]) + error (0, 0, _("Must specify user name for stat-user option")); + else + { ++ free ((char *) stat_user); + stat_user = xstrdup (arg1); + + struct passwd *pw = getpwnam (stat_user); + +diff --git a/nss/nss_files/files-alias.c b/nss/nss_files/files-alias.c +index cfd34b66b9..35b0bfc5d2 100644 +--- a/nss/nss_files/files-alias.c ++++ b/nss/nss_files/files-alias.c +@@ -221,6 +221,13 @@ get_next_alias (FILE *stream, const char *match, struct aliasent *result, + { + while (! feof_unlocked (listfile)) + { ++ if (room_left < 2) ++ { ++ free (old_line); ++ fclose (listfile); ++ goto no_more_room; ++ } ++ + first_unused[room_left - 1] = '\xff'; + line = fgets_unlocked (first_unused, room_left, + listfile); +@@ -229,6 +236,7 @@ get_next_alias (FILE *stream, const char *match, struct aliasent *result, + if (first_unused[room_left - 1] != '\xff') + { + free (old_line); ++ fclose (listfile); + goto no_more_room; + } + +@@ -256,6 +264,7 @@ get_next_alias (FILE *stream, const char *match, struct aliasent *result, + + __alignof__ (char *))) + { + free (old_line); ++ fclose (listfile); + goto no_more_room; + } + room_left -= ((first_unused - cp) + diff --git a/gnu/packages/patches/grub-binutils-compat.patch b/gnu/packages/patches/grub-binutils-compat.patch new file mode 100644 index 0000000000..2107869314 --- /dev/null +++ b/gnu/packages/patches/grub-binutils-compat.patch @@ -0,0 +1,53 @@ +Fix a relocation issue that shows up with recent binutils. + +Patch taken from upstream: +https://git.sv.gnu.org/cgit/grub.git/commit/?id=842c390469e2c2e10b5aa36700324cd3bde25875 + +diff --git a/grub-core/efiemu/i386/loadcore64.c b/grub-core/efiemu/i386/loadcore64.c +index e49d0b6..18facf4 100644 +--- a/grub-core/efiemu/i386/loadcore64.c ++++ b/grub-core/efiemu/i386/loadcore64.c +@@ -98,6 +98,7 @@ grub_arch_efiemu_relocate_symbols64 (grub_efiemu_segment_t segs, + break; + + case R_X86_64_PC32: ++ case R_X86_64_PLT32: + err = grub_efiemu_write_value (addr, + *addr32 + rel->r_addend + + sym.off +diff --git a/grub-core/kern/x86_64/dl.c b/grub-core/kern/x86_64/dl.c +index 4406906..3a73e6e 100644 +--- a/grub-core/kern/x86_64/dl.c ++++ b/grub-core/kern/x86_64/dl.c +@@ -70,6 +70,7 @@ grub_arch_dl_relocate_symbols (grub_dl_t mod, void *ehdr, + break; + + case R_X86_64_PC32: ++ case R_X86_64_PLT32: + { + grub_int64_t value; + value = ((grub_int32_t) *addr32) + rel->r_addend + sym->st_value - +diff --git a/util/grub-mkimagexx.c b/util/grub-mkimagexx.c +index a2bb054..39d7efb 100644 +--- a/util/grub-mkimagexx.c ++++ b/util/grub-mkimagexx.c +@@ -841,6 +841,7 @@ SUFFIX (relocate_addresses) (Elf_Ehdr *e, Elf_Shdr *sections, + break; + + case R_X86_64_PC32: ++ case R_X86_64_PLT32: + { + grub_uint32_t *t32 = (grub_uint32_t *) target; + *t32 = grub_host_to_target64 (grub_target_to_host32 (*t32) +diff --git a/util/grub-module-verifier.c b/util/grub-module-verifier.c +index 9179285..a79271f 100644 +--- a/util/grub-module-verifier.c ++++ b/util/grub-module-verifier.c +@@ -19,6 +19,7 @@ struct grub_module_verifier_arch archs[] = { + -1 + }, (int[]){ + R_X86_64_PC32, ++ R_X86_64_PLT32, + -1 + } + }, diff --git a/gnu/packages/patches/jemalloc-arm-address-bits.patch b/gnu/packages/patches/jemalloc-arm-address-bits.patch deleted file mode 100644 index f2ef24c25a..0000000000 --- a/gnu/packages/patches/jemalloc-arm-address-bits.patch +++ /dev/null @@ -1,39 +0,0 @@ -From 8cfc9dec37b312a2686f602bbcdd102ca07cca99 Mon Sep 17 00:00:00 2001 -From: David Goldblatt <davidgoldblatt@fb.com> -Date: Fri, 29 Sep 2017 13:54:08 -0700 -Subject: [PATCH] ARM: Don't extend bit LG_VADDR to compute high address bits. - -In userspace ARM on Linux, zero-ing the high bits is the correct way to do this. -This doesn't fix the fact that we currently set LG_VADDR to 48 on ARM, when in -fact larger virtual address sizes are coming soon. We'll cross that bridge when -we come to it. ---- - include/jemalloc/internal/rtree.h | 12 ++++++++++++ - 1 file changed, 12 insertions(+) - -diff --git a/include/jemalloc/internal/rtree.h b/include/jemalloc/internal/rtree.h -index b5d4db39..4563db23 100644 ---- a/include/jemalloc/internal/rtree.h -+++ b/include/jemalloc/internal/rtree.h -@@ -178,9 +178,21 @@ rtree_leaf_elm_bits_read(tsdn_t *tsdn, rtree_t *rtree, rtree_leaf_elm_t *elm, - - JEMALLOC_ALWAYS_INLINE extent_t * - rtree_leaf_elm_bits_extent_get(uintptr_t bits) { -+# ifdef __aarch64__ -+ /* -+ * aarch64 doesn't sign extend the highest virtual address bit to set -+ * the higher ones. Instead, the high bits gets zeroed. -+ */ -+ uintptr_t high_bit_mask = ((uintptr_t)1 << LG_VADDR) - 1; -+ /* Mask off the slab bit. */ -+ uintptr_t low_bit_mask = ~(uintptr_t)1; -+ uintptr_t mask = high_bit_mask & low_bit_mask; -+ return (extent_t *)(bits & mask); -+# else - /* Restore sign-extended high bits, mask slab bit. */ - return (extent_t *)((uintptr_t)((intptr_t)(bits << RTREE_NHIB) >> - RTREE_NHIB) & ~((uintptr_t)0x1)); -+# endif - } - - JEMALLOC_ALWAYS_INLINE szind_t diff --git a/gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch b/gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch new file mode 100644 index 0000000000..3056f0baad --- /dev/null +++ b/gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch @@ -0,0 +1,32 @@ +Make yat2m in libgcrypt respect SOURCE_DATE_EPOCH, making +the build reproducible. + +This was already fixed upstream in GnuPG: +https://dev.gnupg.org/rG139de02b93773615bdd95e04a7f0c1ad73b4f6fb + +and in libgpg-error: +https://dev.gnupg.org/rE5494a5728418938d2e42158bb646b07124184e64 + + +--- a/doc/yat2m.c 2017-11-23 19:16:58.000000000 +0100 ++++ b/doc/yat2m.c 2017-08-28 12:22:54.000000000 +0200 +@@ -1475,6 +1484,7 @@ + main (int argc, char **argv) + { + int last_argc = -1; ++ const char *s; + + opt_source = "GNU"; + opt_release = ""; +@@ -1608,6 +1618,11 @@ + if (argc > 1) + die ("usage: " PGM " [OPTION] [FILE] (try --help for more information)\n"); + ++ /* Take care of supplied timestamp for reproducible builds. See ++ * https://reproducible-builds.org/specs/source-date-epoch/ */ ++ if (!opt_date && (s = getenv ("SOURCE_DATE_EPOCH")) && *s) ++ opt_date = s; ++ + /* Start processing. */ + if (argc && strcmp (*argv, "-")) + { diff --git a/gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch b/gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch deleted file mode 100644 index d848d639b2..0000000000 --- a/gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch +++ /dev/null @@ -1,58 +0,0 @@ -https://git.gnupg.org/cgi-bin/gitweb.cgi?p=libgpg-error.git;a=patch;h=791177de023574223eddf7288eb7c5a0721ac623 - -From 791177de023574223eddf7288eb7c5a0721ac623 Mon Sep 17 00:00:00 2001 -From: Werner Koch <wk@gnupg.org> -Date: Sun, 18 Mar 2018 17:39:43 +0100 -Subject: [PATCH] core: Fix regression on arm64 due to invalid use of va_list. - -* src/logging.c (_gpgrt_log_printhex): Provide a dummy arg instead of -NULL. --- - -Fix -Suggested-by: Jakub Wilk <jwilk@jwilk.net> - -Signed-off-by: Werner Koch <wk@gnupg.org> ---- - src/logging.c | 18 ++++++++++++++---- - 1 file changed, 14 insertions(+), 4 deletions(-) - -diff --git a/src/logging.c b/src/logging.c -index 1a4f620..d01f974 100644 ---- a/src/logging.c -+++ b/src/logging.c -@@ -1090,9 +1090,10 @@ _gpgrt_log_flush (void) - - - /* Print a hexdump of (BUFFER,LENGTH). With FMT passed as NULL print -- * just the raw dump, with FMT being an empty string, print a trailing -- * linefeed, otherwise print an entire debug line with the expanded -- * FMT followed by a possible wrapped hexdump and a final LF. */ -+ * just the raw dump (in this case ARG_PTR is not used), with FMT -+ * being an empty string, print a trailing linefeed, otherwise print -+ * an entire debug line with the expanded FMT followed by a possible -+ * wrapped hexdump and a final LF. */ - void - _gpgrt_logv_printhex (const void *buffer, size_t length, - const char *fmt, va_list arg_ptr) -@@ -1150,7 +1151,16 @@ _gpgrt_log_printhex (const void *buffer, size_t length, - va_end (arg_ptr); - } - else -- _gpgrt_logv_printhex (buffer, length, NULL, NULL); -+ { -+ /* va_list is not necessary a pointer and thus we can't use NULL -+ * because that would conflict with platforms using a straight -+ * struct for it (e.g. arm64). We use a dummy variable instead; -+ * the static is a simple way zero it out so to not get -+ * complains about uninitialized use. */ -+ static va_list dummy_argptr; -+ -+ _gpgrt_logv_printhex (buffer, length, NULL, dummy_argptr); -+ } - } - - --- -2.8.0.rc3 - diff --git a/gnu/packages/patches/lirc-reproducible-build.patch b/gnu/packages/patches/lirc-reproducible-build.patch new file mode 100644 index 0000000000..20f9344715 --- /dev/null +++ b/gnu/packages/patches/lirc-reproducible-build.patch @@ -0,0 +1,72 @@ +Build Lirc reproducibly. + +https://sourceforge.net/p/lirc/tickets/301/ +https://sourceforge.net/p/lirc/git/merge-requests/33/ +https://sourceforge.net/p/lirc/git/merge-requests/34/ +https://sourceforge.net/p/lirc/git/merge-requests/36/ + +Index: lirc-0.10.1/tools/lirc-lsplugins.cpp +=================================================================== +--- lirc-0.10.1.orig/tools/lirc-lsplugins.cpp ++++ lirc-0.10.1/tools/lirc-lsplugins.cpp +@@ -415,10 +415,9 @@ static void print_header(void) + static void print_yaml_header(void) + { + static const char* const YAML_HEADER = +- "#\n# Generated by lirc-lsplugins --yaml (%s) at %s#\n "; +- const time_t now = time(NULL); ++ "#\n# Generated by lirc-lsplugins --yaml (%s)#\n "; + +- printf(YAML_HEADER, VERSION, ctime(&now)); ++ printf(YAML_HEADER, VERSION); + printf("\ndrivers:\n"); + } + +Index: lirc-0.10.1/python-pkg/lirc/database.py +=================================================================== +--- lirc-0.10.1.orig/python-pkg/lirc/database.py ++++ lirc-0.10.1/python-pkg/lirc/database.py +@@ -156,7 +156,7 @@ class Database(object): + d['device_hint'] = hint + + configs = {} +- for path in glob.glob(configdir + '/*.conf'): ++ for path in sorted(glob.glob(configdir + '/*.conf')): + with open(path) as f: + cf = yaml.load(f.read()) + configs[cf['config']['id']] = cf['config'] +Index: lirc-0.10.1/tools/irdb-get +=================================================================== +--- lirc-0.10.1.orig/tools/irdb-get ++++ lirc-0.10.1/tools/irdb-get +@@ -9,7 +9,6 @@ import fnmatch + import os + import os.path + import sys +-import time + import urllib.error # pylint: disable=no-name-in-module,F0401,E0611 + import urllib.request # pylint: disable=no-name-in-module,F0401,E0611 + +@@ -193,7 +192,7 @@ def do_yaml_config(): + lircmd_by_driver[driver].append("%s/%s" % (tokens[0], tokens[2])) + + print("#") +- print("# Created by 'irdb-get yaml-config' at " + time.ctime()) ++ print("# Created by 'irdb-get yaml-config'") + print("#") + print("\nlircd_by_driver:") + print_yaml_dict(lircd_by_driver) +Index: lirc-0.10.1/tools/lirc-make-devinput +=================================================================== +--- lirc-0.10.1.orig/tools/lirc-make-devinput ++++ lirc-0.10.1/tools/lirc-make-devinput +@@ -61,8 +61,7 @@ if test -n "$lirc_map"; then + fi + + +-echo "# Generated by $(basename $0) on $(uname -r)" +-echo "# Date: $(date)" ++echo "# Generated by $(basename $0)" + cat <<EOF + + begin remote diff --git a/gnu/packages/patches/m4-gnulib-libio.patch b/gnu/packages/patches/m4-gnulib-libio.patch new file mode 100644 index 0000000000..a26622ccf3 --- /dev/null +++ b/gnu/packages/patches/m4-gnulib-libio.patch @@ -0,0 +1,128 @@ +Adjust the bundled gnulib to cope with removal of libio interface in +glibc 2.28. + +Based on this upstream patch, without hunks that do not apply to m4: +https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=4af4a4a71827c0bc5e0ec67af23edef4f15cee8e + +diff --git a/lib/fflush.c b/lib/fflush.c +index 983ade0..a6edfa1 100644 +--- a/lib/fflush.c ++++ b/lib/fflush.c +@@ -33,7 +33,7 @@ + #undef fflush + + +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + + /* Clear the stream's ungetc buffer, preserving the value of ftello (fp). */ + static void +@@ -72,7 +72,7 @@ clear_ungetc_buffer (FILE *fp) + + #endif + +-#if ! (defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */) ++#if ! (defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */) + + # if (defined __sferror || defined __DragonFly__ || defined __ANDROID__) && defined __SNPT + /* FreeBSD, NetBSD, OpenBSD, DragonFly, Mac OS X, Cygwin, Minix 3, Android */ +@@ -148,7 +148,7 @@ rpl_fflush (FILE *stream) + if (stream == NULL || ! freading (stream)) + return fflush (stream); + +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + + clear_ungetc_buffer_preserving_position (stream); + +diff --git a/lib/fpending.c b/lib/fpending.c +index c84e3a5..789f50e 100644 +--- a/lib/fpending.c ++++ b/lib/fpending.c +@@ -32,7 +32,7 @@ __fpending (FILE *fp) + /* Most systems provide FILE as a struct and the necessary bitmask in + <stdio.h>, because they need it for implementing getc() and putc() as + fast macros. */ +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + return fp->_IO_write_ptr - fp->_IO_write_base; + #elif defined __sferror || defined __DragonFly__ || defined __ANDROID__ + /* FreeBSD, NetBSD, OpenBSD, DragonFly, Mac OS X, Cygwin, Minix 3, Android */ +diff --git a/lib/fpurge.c b/lib/fpurge.c +index b1d417c..3aedcc3 100644 +--- a/lib/fpurge.c ++++ b/lib/fpurge.c +@@ -62,7 +62,7 @@ fpurge (FILE *fp) + /* Most systems provide FILE as a struct and the necessary bitmask in + <stdio.h>, because they need it for implementing getc() and putc() as + fast macros. */ +-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + fp->_IO_read_end = fp->_IO_read_ptr; + fp->_IO_write_ptr = fp->_IO_write_base; + /* Avoid memory leak when there is an active ungetc buffer. */ +diff --git a/lib/freadahead.c b/lib/freadahead.c +index c2ecb5b..23ec76e 100644 +--- a/lib/freadahead.c ++++ b/lib/freadahead.c +@@ -30,7 +30,7 @@ extern size_t __sreadahead (FILE *); + size_t + freadahead (FILE *fp) + { +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + if (fp->_IO_write_ptr > fp->_IO_write_base) + return 0; + return (fp->_IO_read_end - fp->_IO_read_ptr) +diff --git a/lib/freading.c b/lib/freading.c +index 73c28ac..c24d0c8 100644 +--- a/lib/freading.c ++++ b/lib/freading.c +@@ -31,7 +31,7 @@ freading (FILE *fp) + /* Most systems provide FILE as a struct and the necessary bitmask in + <stdio.h>, because they need it for implementing getc() and putc() as + fast macros. */ +-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + return ((fp->_flags & _IO_NO_WRITES) != 0 + || ((fp->_flags & (_IO_NO_READS | _IO_CURRENTLY_PUTTING)) == 0 + && fp->_IO_read_base != NULL)); +diff --git a/lib/fseeko.c b/lib/fseeko.c +index 0101ab5..193f4e8 100644 +--- a/lib/fseeko.c ++++ b/lib/fseeko.c +@@ -47,7 +47,7 @@ fseeko (FILE *fp, off_t offset, int whence) + #endif + + /* These tests are based on fpurge.c. */ +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + if (fp->_IO_read_end == fp->_IO_read_ptr + && fp->_IO_write_ptr == fp->_IO_write_base + && fp->_IO_save_base == NULL) +@@ -123,7 +123,7 @@ fseeko (FILE *fp, off_t offset, int whence) + return -1; + } + +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + fp->_flags &= ~_IO_EOF_SEEN; + fp->_offset = pos; + #elif defined __sferror || defined __DragonFly__ || defined __ANDROID__ +diff --git a/lib/stdio-impl.h b/lib/stdio-impl.h +index 78d896e..05c5752 100644 +--- a/lib/stdio-impl.h ++++ b/lib/stdio-impl.h +@@ -18,6 +18,12 @@ + the same implementation of stdio extension API, except that some fields + have different naming conventions, or their access requires some casts. */ + ++/* Glibc 2.28 made _IO_IN_BACKUP private. For now, work around this ++ problem by defining it ourselves. FIXME: Do not rely on glibc ++ internals. */ ++#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN ++# define _IO_IN_BACKUP 0x100 ++#endif + + /* BSD stdio derived implementations. */ + diff --git a/gnu/packages/patches/mariadb-gcc-ice.patch b/gnu/packages/patches/mariadb-gcc-ice.patch deleted file mode 100644 index 59b188f45a..0000000000 --- a/gnu/packages/patches/mariadb-gcc-ice.patch +++ /dev/null @@ -1,24 +0,0 @@ -Work around this GCC ICE: <https://bugs.gnu.org/31708>. It shows up -only when doing native compiles on armhf-linux. - ---- mariadb-10.1.33/plugin/semisync/semisync_master.cc 2018-07-28 02:13:12.604020250 +0200 -+++ mariadb-10.1.33/plugin/semisync/semisync_master.cc 2018-07-28 02:14:11.907753417 +0200 -@@ -847,6 +847,8 @@ - return function_exit(kWho, 0); - } - -+volatile const void *kSyncHeaderPtr = &ReplSemiSyncMaster::kSyncHeader; -+ - int ReplSemiSyncMaster::reserveSyncHeader(unsigned char *header, - unsigned long size) - { -@@ -873,7 +875,7 @@ - /* Set the magic number and the sync status. By default, no sync - * is required. - */ -- memcpy(header, kSyncHeader, sizeof(kSyncHeader)); -+ memcpy(header, (void *)kSyncHeaderPtr, sizeof(kSyncHeader)); - hlen= sizeof(kSyncHeader); - } - return function_exit(kWho, hlen); - diff --git a/gnu/packages/patches/meson-for-build-rpath.patch b/gnu/packages/patches/meson-for-build-rpath.patch index 59249e294d..ef9a73f07c 100644 --- a/gnu/packages/patches/meson-for-build-rpath.patch +++ b/gnu/packages/patches/meson-for-build-rpath.patch @@ -2,10 +2,10 @@ This patch removes a part of meson that clears the rpath upon installation. This will only be applied to a special version of meson, used for the meson-build-system. -Patch by Peter Mikkelsen <petermikkelsen10@gmail.com> +Original patch for Meson 0.42.0 by Peter Mikkelsen <petermikkelsen10@gmail.com> ---- meson-0.42.0/mesonbuild/minstall.py.orig 2017-09-09 01:49:39.147374148 +0200 -+++ meson-0.42.0/mesonbuild/minstall.py 2017-09-09 01:51:01.209134717 +0200 +--- meson-0.47.1/mesonbuild/minstall.py.old 2018-08-10 11:01:27.812327013 +0200 ++++ meson-0.47.1/mesonbuild/minstall.py 2018-08-10 11:01:51.940368505 +0200 @@ -436,15 +436,6 @@ print("Symlink creation does not work on this platform. " "Skipping all symlinking.") diff --git a/gnu/packages/patches/mono-mdoc-timestamping.patch b/gnu/packages/patches/mono-mdoc-timestamping.patch new file mode 100644 index 0000000000..d5191a93eb --- /dev/null +++ b/gnu/packages/patches/mono-mdoc-timestamping.patch @@ -0,0 +1,15 @@ +--- mono-4.4.1/mcs/class/monodoc/Monodoc/storage/ZipStorage.cs.orig 2018-11-26 22:16:25.008879747 +0100 ++++ mono-4.4.1/mcs/class/monodoc/Monodoc/storage/ZipStorage.cs 2018-11-26 22:21:53.969770985 +0100 +@@ -74,6 +74,12 @@ + id = GetNewCode (); + + ZipEntry entry = new ZipEntry (id); ++ var SOURCE_DATE_EPOCH_string = Environment.GetEnvironmentVariable("SOURCE_DATE_EPOCH"); ++ if (SOURCE_DATE_EPOCH_string != null) ++ { ++ var SOURCE_DATE_EPOCH = Convert.ToInt64(SOURCE_DATE_EPOCH_string); ++ entry.DateTime = new DateTime(SOURCE_DATE_EPOCH, DateTimeKind.Utc); ++ } + zipOutput.PutNextEntry (entry); + } + diff --git a/gnu/packages/patches/oath-toolkit-glibc-compat.patch b/gnu/packages/patches/oath-toolkit-glibc-compat.patch new file mode 100644 index 0000000000..22814599e5 --- /dev/null +++ b/gnu/packages/patches/oath-toolkit-glibc-compat.patch @@ -0,0 +1,90 @@ +Adjust the bundled Gnulib to cope with removal of libio interface in Glibc 2.28. + +Based on this upstream gnulib patch: +https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=4af4a4a71827c0bc5e0ec67af23edef4f15cee8e + +--- a/liboath/gl/fflush.c ++++ b/liboath/gl/fflush.c +@@ -33,7 +33,7 @@ + #undef fflush + + +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + + /* Clear the stream's ungetc buffer, preserving the value of ftello (fp). */ + static void +@@ -72,7 +72,7 @@ + + #endif + +-#if ! (defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */) ++#if ! (defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */) + + # if (defined __sferror || defined __DragonFly__ || defined __ANDROID__) && defined __SNPT + /* FreeBSD, NetBSD, OpenBSD, DragonFly, Mac OS X, Cygwin, Android */ +@@ -148,7 +148,7 @@ + if (stream == NULL || ! freading (stream)) + return fflush (stream); + +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + + clear_ungetc_buffer_preserving_position (stream); + +--- a/liboath/gl/fpurge.c ++++ b/liboath/gl/fpurge.c +@@ -62,7 +62,7 @@ + /* Most systems provide FILE as a struct and the necessary bitmask in + <stdio.h>, because they need it for implementing getc() and putc() as + fast macros. */ +-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + fp->_IO_read_end = fp->_IO_read_ptr; + fp->_IO_write_ptr = fp->_IO_write_base; + /* Avoid memory leak when there is an active ungetc buffer. */ +--- a/libaoth/gl/freading.c ++++ b/liboath/gl/freading.c +@@ -31,7 +31,7 @@ + /* Most systems provide FILE as a struct and the necessary bitmask in + <stdio.h>, because they need it for implementing getc() and putc() as + fast macros. */ +-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + return ((fp->_flags & _IO_NO_WRITES) != 0 + || ((fp->_flags & (_IO_NO_READS | _IO_CURRENTLY_PUTTING)) == 0 + && fp->_IO_read_base != NULL)); +--- a/liboath/gl/fseeko.c ++++ b/liboath/gl/fseeko.c +@@ -47,7 +47,7 @@ + #endif + + /* These tests are based on fpurge.c. */ +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + if (fp->_IO_read_end == fp->_IO_read_ptr + && fp->_IO_write_ptr == fp->_IO_write_base + && fp->_IO_save_base == NULL) +@@ -123,7 +123,7 @@ + return -1; + } + +-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ ++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */ + fp->_flags &= ~_IO_EOF_SEEN; + fp->_offset = pos; + #elif defined __sferror || defined __DragonFly__ || defined __ANDROID__ +--- a/liboath/gl/stdio-impl.h ++++ b/liboath/gl/stdio-impl.h +@@ -18,6 +18,11 @@ + the same implementation of stdio extension API, except that some fields + have different naming conventions, or their access requires some casts. */ + ++/* Glibc 2.28 made _IO_IN_BACKUP private, so define it here for now. */ ++#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN ++# define _IO_IN_BACKUP 0x100 ++#endif ++ + /* BSD stdio derived implementations. */ + + #if defined __NetBSD__ /* NetBSD */ diff --git a/gnu/packages/patches/openssl-1.0.2-CVE-2018-0495.patch b/gnu/packages/patches/openssl-1.0.2-CVE-2018-0495.patch deleted file mode 100644 index 2d54ed03b9..0000000000 --- a/gnu/packages/patches/openssl-1.0.2-CVE-2018-0495.patch +++ /dev/null @@ -1,215 +0,0 @@ -Fix CVE-2018-0495: - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-0495 -https://www.nccgroup.trust/us/our-research/technical-advisory-return-of-the-hidden-number-problem/ - -Patch copied from upstream source repository: - -https://github.com/openssl/openssl/commit/949ff36623eafc3523a9f91784992965018ffb05 - -From 949ff36623eafc3523a9f91784992965018ffb05 Mon Sep 17 00:00:00 2001 -From: Matt Caswell <matt@openssl.org> -Date: Fri, 25 May 2018 12:10:13 +0100 -Subject: [PATCH] Add blinding to an ECDSA signature - -Keegan Ryan (NCC Group) has demonstrated a side channel attack on an -ECDSA signature operation. During signing the signer calculates: - -s:= k^-1 * (m + r * priv_key) mod order - -The addition operation above provides a sufficient signal for a -flush+reload attack to derive the private key given sufficient signature -operations. - -As a mitigation (based on a suggestion from Keegan) we add blinding to -the operation so that: - -s := k^-1 * blind^-1 (blind * m + blind * r * priv_key) mod order - -Since this attack is a localhost side channel only no CVE is assigned. - -Reviewed-by: Rich Salz <rsalz@openssl.org> ---- - CHANGES | 4 ++ - crypto/ecdsa/ecdsatest.c | 9 ++++- - crypto/ecdsa/ecs_ossl.c | 82 ++++++++++++++++++++++++++++++++-------- - 3 files changed, 79 insertions(+), 16 deletions(-) - -diff --git a/crypto/ecdsa/ecdsatest.c b/crypto/ecdsa/ecdsatest.c -index 0f301f86d9..a130fc9117 100644 ---- a/crypto/ecdsa/ecdsatest.c -+++ b/crypto/ecdsa/ecdsatest.c -@@ -137,7 +137,7 @@ int restore_rand(void) - return 1; - } - --static int fbytes_counter = 0; -+static int fbytes_counter = 0, use_fake = 0; - static const char *numbers[8] = { - "651056770906015076056810763456358567190100156695615665659", - "6140507067065001063065065565667405560006161556565665656654", -@@ -158,6 +158,11 @@ int fbytes(unsigned char *buf, int num) - int ret; - BIGNUM *tmp = NULL; - -+ if (use_fake == 0) -+ return old_rand->bytes(buf, num); -+ -+ use_fake = 0; -+ - if (fbytes_counter >= 8) - return 0; - tmp = BN_new(); -@@ -199,11 +204,13 @@ int x9_62_test_internal(BIO *out, int nid, const char *r_in, const char *s_in) - /* create the key */ - if ((key = EC_KEY_new_by_curve_name(nid)) == NULL) - goto x962_int_err; -+ use_fake = 1; - if (!EC_KEY_generate_key(key)) - goto x962_int_err; - BIO_printf(out, "."); - (void)BIO_flush(out); - /* create the signature */ -+ use_fake = 1; - signature = ECDSA_do_sign(digest, 20, key); - if (signature == NULL) - goto x962_int_err; -diff --git a/crypto/ecdsa/ecs_ossl.c b/crypto/ecdsa/ecs_ossl.c -index 16d4f59b9b..1d37551803 100644 ---- a/crypto/ecdsa/ecs_ossl.c -+++ b/crypto/ecdsa/ecs_ossl.c -@@ -252,6 +252,7 @@ static ECDSA_SIG *ecdsa_do_sign(const unsigned char *dgst, int dgst_len, - { - int ok = 0, i; - BIGNUM *kinv = NULL, *s, *m = NULL, *tmp = NULL, *order = NULL; -+ BIGNUM *blind = NULL, *blindm = NULL; - const BIGNUM *ckinv; - BN_CTX *ctx = NULL; - const EC_GROUP *group; -@@ -269,14 +270,25 @@ static ECDSA_SIG *ecdsa_do_sign(const unsigned char *dgst, int dgst_len, - } - - ret = ECDSA_SIG_new(); -- if (!ret) { -+ if (ret == NULL) { - ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_MALLOC_FAILURE); - return NULL; - } - s = ret->s; - -- if ((ctx = BN_CTX_new()) == NULL || (order = BN_new()) == NULL || -- (tmp = BN_new()) == NULL || (m = BN_new()) == NULL) { -+ ctx = BN_CTX_new(); -+ if (ctx == NULL) { -+ ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_MALLOC_FAILURE); -+ goto err; -+ } -+ -+ BN_CTX_start(ctx); -+ order = BN_CTX_get(ctx); -+ tmp = BN_CTX_get(ctx); -+ m = BN_CTX_get(ctx); -+ blind = BN_CTX_get(ctx); -+ blindm = BN_CTX_get(ctx); -+ if (blindm == NULL) { - ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_MALLOC_FAILURE); - goto err; - } -@@ -315,26 +327,70 @@ static ECDSA_SIG *ecdsa_do_sign(const unsigned char *dgst, int dgst_len, - } - } - -- if (!BN_mod_mul(tmp, priv_key, ret->r, order, ctx)) { -+ /* -+ * The normal signature calculation is: -+ * -+ * s := k^-1 * (m + r * priv_key) mod order -+ * -+ * We will blind this to protect against side channel attacks -+ * -+ * s := k^-1 * blind^-1 * (blind * m + blind * r * priv_key) mod order -+ */ -+ -+ /* Generate a blinding value */ -+ do { -+ if (!BN_rand(blind, BN_num_bits(order) - 1, -1, 0)) -+ goto err; -+ } while (BN_is_zero(blind)); -+ BN_set_flags(blind, BN_FLG_CONSTTIME); -+ BN_set_flags(blindm, BN_FLG_CONSTTIME); -+ BN_set_flags(tmp, BN_FLG_CONSTTIME); -+ -+ /* tmp := blind * priv_key * r mod order */ -+ if (!BN_mod_mul(tmp, blind, priv_key, order, ctx)) { -+ ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_BN_LIB); -+ goto err; -+ } -+ if (!BN_mod_mul(tmp, tmp, ret->r, order, ctx)) { -+ ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_BN_LIB); -+ goto err; -+ } -+ -+ /* blindm := blind * m mod order */ -+ if (!BN_mod_mul(blindm, blind, m, order, ctx)) { -+ ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_BN_LIB); -+ goto err; -+ } -+ -+ /* s : = (blind * priv_key * r) + (blind * m) mod order */ -+ if (!BN_mod_add_quick(s, tmp, blindm, order)) { -+ ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_BN_LIB); -+ goto err; -+ } -+ -+ /* s:= s * blind^-1 mod order */ -+ if (BN_mod_inverse(blind, blind, order, ctx) == NULL) { - ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_BN_LIB); - goto err; - } -- if (!BN_mod_add_quick(s, tmp, m, order)) { -+ if (!BN_mod_mul(s, s, blind, order, ctx)) { - ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_BN_LIB); - goto err; - } -+ -+ /* s := s * k^-1 mod order */ - if (!BN_mod_mul(s, s, ckinv, order, ctx)) { - ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ERR_R_BN_LIB); - goto err; - } -+ - if (BN_is_zero(s)) { - /* - * if kinv and r have been supplied by the caller don't to - * generate new kinv and r values - */ - if (in_kinv != NULL && in_r != NULL) { -- ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, -- ECDSA_R_NEED_NEW_SETUP_VALUES); -+ ECDSAerr(ECDSA_F_ECDSA_DO_SIGN, ECDSA_R_NEED_NEW_SETUP_VALUES); - goto err; - } - } else -@@ -349,15 +405,11 @@ static ECDSA_SIG *ecdsa_do_sign(const unsigned char *dgst, int dgst_len, - ECDSA_SIG_free(ret); - ret = NULL; - } -- if (ctx) -+ if (ctx != NULL) { -+ BN_CTX_end(ctx); - BN_CTX_free(ctx); -- if (m) -- BN_clear_free(m); -- if (tmp) -- BN_clear_free(tmp); -- if (order) -- BN_free(order); -- if (kinv) -+ } -+ if (kinv != NULL) - BN_clear_free(kinv); - return ret; - } --- -2.17.1 - diff --git a/gnu/packages/patches/openssl-1.0.2-CVE-2018-0732.patch b/gnu/packages/patches/openssl-1.0.2-CVE-2018-0732.patch deleted file mode 100644 index 50b95306a5..0000000000 --- a/gnu/packages/patches/openssl-1.0.2-CVE-2018-0732.patch +++ /dev/null @@ -1,50 +0,0 @@ -Fix CVE-2018-0732: - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-0732 - -Patch copied from upstream source repository: - -https://github.com/openssl/openssl/commit/3984ef0b72831da8b3ece4745cac4f8575b19098 - -From 3984ef0b72831da8b3ece4745cac4f8575b19098 Mon Sep 17 00:00:00 2001 -From: Guido Vranken <guidovranken@gmail.com> -Date: Mon, 11 Jun 2018 19:38:54 +0200 -Subject: [PATCH] Reject excessively large primes in DH key generation. - -CVE-2018-0732 - -Signed-off-by: Guido Vranken <guidovranken@gmail.com> - -(cherry picked from commit 91f7361f47b082ae61ffe1a7b17bb2adf213c7fe) - -Reviewed-by: Tim Hudson <tjh@openssl.org> -Reviewed-by: Matt Caswell <matt@openssl.org> -(Merged from https://github.com/openssl/openssl/pull/6457) ---- - crypto/dh/dh_key.c | 7 ++++++- - 1 file changed, 6 insertions(+), 1 deletion(-) - -diff --git a/crypto/dh/dh_key.c b/crypto/dh/dh_key.c -index 387558f146..f235e0d682 100644 ---- a/crypto/dh/dh_key.c -+++ b/crypto/dh/dh_key.c -@@ -130,10 +130,15 @@ static int generate_key(DH *dh) - int ok = 0; - int generate_new_key = 0; - unsigned l; -- BN_CTX *ctx; -+ BN_CTX *ctx = NULL; - BN_MONT_CTX *mont = NULL; - BIGNUM *pub_key = NULL, *priv_key = NULL; - -+ if (BN_num_bits(dh->p) > OPENSSL_DH_MAX_MODULUS_BITS) { -+ DHerr(DH_F_GENERATE_KEY, DH_R_MODULUS_TOO_LARGE); -+ return 0; -+ } -+ - ctx = BN_CTX_new(); - if (ctx == NULL) - goto err; --- -2.17.1 - diff --git a/gnu/packages/patches/parted-glibc-compat.patch b/gnu/packages/patches/parted-glibc-compat.patch new file mode 100644 index 0000000000..edf4afb0d1 --- /dev/null +++ b/gnu/packages/patches/parted-glibc-compat.patch @@ -0,0 +1,17 @@ +Include <sys/sysmacros.h> for "major" and "minor". + +Taken from upstream: +https://git.savannah.gnu.org/cgit/parted.git/commit/?id=ba5e0451b51c983e40afd123b6e0d3eddb55e610 + +diff --git a/libparted/arch/linux.c b/libparted/arch/linux.c +index 31b98ab..7e86b51 100644 +--- a/libparted/arch/linux.c ++++ b/libparted/arch/linux.c +@@ -41,6 +41,7 @@ + #include <sys/utsname.h> /* for uname() */ + #include <scsi/scsi.h> + #include <assert.h> ++#include <sys/sysmacros.h> + #ifdef ENABLE_DEVICE_MAPPER + #include <libdevmapper.h> + #endif diff --git a/gnu/packages/patches/perf-gcc-ice.patch b/gnu/packages/patches/perf-gcc-ice.patch deleted file mode 100644 index 58ab5359c2..0000000000 --- a/gnu/packages/patches/perf-gcc-ice.patch +++ /dev/null @@ -1,13 +0,0 @@ -Work around this GCC ICE: <https://bugs.gnu.org/31708>. - ---- linux-4.16.13/tools/perf/util/header.c 2018-06-04 11:30:39.368146035 +0200 -+++ linux-4.16.13/tools/perf/util/header.c 2018-06-04 11:34:04.667212378 +0200 -@@ -135,7 +135,7 @@ int do_write(struct feat_fd *ff, const v - int write_padded(struct feat_fd *ff, const void *bf, - size_t count, size_t count_aligned) - { -- static const char zero_buf[NAME_ALIGN]; -+ static const char zero_buf[NAME_ALIGN] = { 0 }; - int err = do_write(ff, bf, count); - - if (!err) diff --git a/gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch b/gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch deleted file mode 100644 index 6460cf5855..0000000000 --- a/gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch +++ /dev/null @@ -1,36 +0,0 @@ -Fix CVE-2018-12015: - -https://security-tracker.debian.org/tracker/CVE-2018-12015 -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-12015 -https://rt.cpan.org/Ticket/Display.html?id=125523 - -Patch taken from this upstream commit and adapted to apply to -the bundled copy in the Perl distribution: - -https://github.com/jib/archive-tar-new/commit/ae65651eab053fc6dc4590dbb863a268215c1fc5 - -diff --git a/cpan/Archive-Tar/lib/Archive/Tar.pm b/cpan/Archive-Tar/lib/Archive/Tar.pm -index 6244369..a83975f 100644 ---- a/cpan/Archive-Tar/lib/Archive/Tar.pm -+++ b/cpan/Archive-Tar/lib/Archive/Tar.pm -@@ -845,6 +845,20 @@ sub _extract_file { - return; - } - -+ ### If a file system already contains a block device with the same name as -+ ### the being extracted regular file, we would write the file's content -+ ### to the block device. So remove the existing file (block device) now. -+ ### If an archive contains multiple same-named entries, the last one -+ ### should replace the previous ones. So remove the old file now. -+ ### If the old entry is a symlink to a file outside of the CWD, the new -+ ### entry would create a file there. This is CVE-2018-12015 -+ ### <https://rt.cpan.org/Ticket/Display.html?id=125523>. -+ if (-l $full || -e _) { -+ if (!unlink $full) { -+ $self->_error( qq[Could not remove old file '$full': $!] ); -+ return; -+ } -+ } - if( length $entry->type && $entry->is_file ) { - my $fh = IO::File->new; - $fh->open( $full, '>' ) or ( diff --git a/gnu/packages/patches/perl-deterministic-ordering.patch b/gnu/packages/patches/perl-deterministic-ordering.patch index 92e33ef135..be63d5cde3 100644 --- a/gnu/packages/patches/perl-deterministic-ordering.patch +++ b/gnu/packages/patches/perl-deterministic-ordering.patch @@ -12,10 +12,10 @@ reproducibility. cpan/Devel-PPPort/PPPort_xs.PL | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) -diff --git a/cpan/Devel-PPPort/PPPort_xs.PL b/cpan/Devel-PPPort/PPPort_xs.PL +diff --git a/dist/Devel-PPPort/PPPort_xs.PL b/dist/Devel-PPPort/PPPort_xs.PL index 5f18940..149f2fe 100644 ---- a/cpan/Devel-PPPort/PPPort_xs.PL -+++ b/cpan/Devel-PPPort/PPPort_xs.PL +--- a/dist/Devel-PPPort/PPPort_xs.PL ++++ b/dist/Devel-PPPort/PPPort_xs.PL @@ -38,7 +38,7 @@ END my $file; my $sec; diff --git a/gnu/packages/patches/perl-file-path-CVE-2017-6512.patch b/gnu/packages/patches/perl-file-path-CVE-2017-6512.patch deleted file mode 100644 index 28ab067599..0000000000 --- a/gnu/packages/patches/perl-file-path-CVE-2017-6512.patch +++ /dev/null @@ -1,173 +0,0 @@ -Fix CVE-2017-6512: - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-6512 -https://rt.cpan.org/Public/Bug/Display.html?id=121951 - -Patch copied from Debian, adapted to apply to the copy of File::Path in Perl -5.24.0. - -https://github.com/jkeenan/File-Path/commit/e5ef95276ee8ad471c66ee574a5d42552b3a6af2 -https://anonscm.debian.org/cgit/perl/perl.git/diff/debian/patches/fixes/file_path_chmod_race.diff?id=e7b50f8fb6413f8ddfbbfda2d531615fb029e2d3 - -From d760748be0efca7c05454440e24f3df77bf7cf5d Mon Sep 17 00:00:00 2001 -From: John Lightsey <john@nixnuts.net> -Date: Tue, 2 May 2017 12:03:52 -0500 -Subject: Prevent directory chmod race attack. - -CVE-2017-6512 is a race condition attack where the chmod() of directories -that cannot be entered is misused to change the permissions on other -files or directories on the system. This has been corrected by limiting -the directory-permission loosening logic to systems where fchmod() is -supported. - -[Backported (whitespace adjustments) to File-Path 2.12 / perl 5.24 by -Dominic Hargreaves for Debian.] - -Bug: https://rt.cpan.org/Public/Bug/Display.html?id=121951 -Bug-Debian: https://bugs.debian.org/863870 -Patch-Name: fixes/file_path_chmod_race.diff ---- - cpan/File-Path/lib/File/Path.pm | 39 +++++++++++++++++++++++++-------------- - cpan/File-Path/t/Path.t | 40 ++++++++++++++++++++++++++-------------- - 2 files changed, 51 insertions(+), 28 deletions(-) - -diff --git a/cpan/File-Path/lib/File/Path.pm b/cpan/File-Path/lib/File/Path.pm -index 034da1e..a824cc8 100644 ---- a/cpan/File-Path/lib/File/Path.pm -+++ b/cpan/File-Path/lib/File/Path.pm -@@ -354,21 +354,32 @@ sub _rmtree { - - # see if we can escalate privileges to get in - # (e.g. funny protection mask such as -w- instead of rwx) -- $perm &= oct '7777'; -- my $nperm = $perm | oct '700'; -- if ( -- !( -- $arg->{safe} -- or $nperm == $perm -- or chmod( $nperm, $root ) -- ) -- ) -- { -- _error( $arg, -- "cannot make child directory read-write-exec", $canon ); -- next ROOT_DIR; -+ # This uses fchmod to avoid traversing outside of the proper -+ # location (CVE-2017-6512) -+ my $root_fh; -+ if (open($root_fh, '<', $root)) { -+ my ($fh_dev, $fh_inode) = (stat $root_fh )[0,1]; -+ $perm &= oct '7777'; -+ my $nperm = $perm | oct '700'; -+ local $@; -+ if ( -+ !( -+ $arg->{safe} -+ or $nperm == $perm -+ or !-d _ -+ or $fh_dev ne $ldev -+ or $fh_inode ne $lino -+ or eval { chmod( $nperm, $root_fh ) } -+ ) -+ ) -+ { -+ _error( $arg, -+ "cannot make child directory read-write-exec", $canon ); -+ next ROOT_DIR; -+ } -+ close $root_fh; - } -- elsif ( !chdir($root) ) { -+ if ( !chdir($root) ) { - _error( $arg, "cannot chdir to child", $canon ); - next ROOT_DIR; - } -diff --git a/cpan/File-Path/t/Path.t b/cpan/File-Path/t/Path.t -index ff52fd6..956ca09 100644 ---- a/cpan/File-Path/t/Path.t -+++ b/cpan/File-Path/t/Path.t -@@ -3,7 +3,7 @@ - - use strict; - --use Test::More tests => 127; -+use Test::More tests => 126; - use Config; - use Fcntl ':mode'; - use lib 't/'; -@@ -18,6 +18,13 @@ BEGIN { - - my $Is_VMS = $^O eq 'VMS'; - -+my $fchmod_supported = 0; -+if (open my $fh, curdir()) { -+ my ($perm) = (stat($fh))[2]; -+ $perm &= 07777; -+ eval { $fchmod_supported = chmod( $perm, $fh); }; -+} -+ - # first check for stupid permissions second for full, so we clean up - # behind ourselves - for my $perm (0111,0777) { -@@ -299,16 +306,19 @@ is($created[0], $dir, "created directory (old style 3 mode undef) cross-check"); - - is(rmtree($dir, 0, undef), 1, "removed directory 3 verbose undef"); - --$dir = catdir($tmp_base,'G'); --$dir = VMS::Filespec::unixify($dir) if $Is_VMS; -+SKIP: { -+ skip "fchmod of directories not supported on this platform", 3 unless $fchmod_supported; -+ $dir = catdir($tmp_base,'G'); -+ $dir = VMS::Filespec::unixify($dir) if $Is_VMS; - --@created = mkpath($dir, undef, 0200); -+ @created = mkpath($dir, undef, 0400); - --is(scalar(@created), 1, "created write-only dir"); -+ is(scalar(@created), 1, "created read-only dir"); - --is($created[0], $dir, "created write-only directory cross-check"); -+ is($created[0], $dir, "created read-only directory cross-check"); - --is(rmtree($dir), 1, "removed write-only dir"); -+ is(rmtree($dir), 1, "removed read-only dir"); -+} - - # borderline new-style heuristics - if (chdir $tmp_base) { -@@ -450,26 +460,28 @@ SKIP: { - } - - SKIP : { -- my $skip_count = 19; -+ my $skip_count = 18; - # this test will fail on Windows, as per: - # http://perldoc.perl.org/perlport.html#chmod - - skip "Windows chmod test skipped", $skip_count - if $^O eq 'MSWin32'; -+ skip "fchmod() on directories is not supported on this platform", $skip_count -+ unless $fchmod_supported; - my $mode; - my $octal_mode; - my @inputs = ( -- 0777, 0700, 0070, 0007, -- 0333, 0300, 0030, 0003, -- 0111, 0100, 0010, 0001, -- 0731, 0713, 0317, 0371, 0173, 0137, -- 00 ); -+ 0777, 0700, 0470, 0407, -+ 0433, 0400, 0430, 0403, -+ 0111, 0100, 0110, 0101, -+ 0731, 0713, 0317, 0371, -+ 0173, 0137); - my $input; - my $octal_input; -- $dir = catdir($tmp_base, 'chmod_test'); - - foreach (@inputs) { - $input = $_; -+ $dir = catdir($tmp_base, sprintf("chmod_test%04o", $input)); - # We can skip from here because 0 is last in the list. - skip "Mode of 0 means assume user defaults on VMS", 1 - if ($input == 0 && $Is_VMS); diff --git a/gnu/packages/patches/podofo-cmake-3.12.patch b/gnu/packages/patches/podofo-cmake-3.12.patch new file mode 100644 index 0000000000..0a3c19b21a --- /dev/null +++ b/gnu/packages/patches/podofo-cmake-3.12.patch @@ -0,0 +1,19 @@ +The build fails with cmake 3.12.0. This patch will be obsolete with the next +release. + +https://sourceforge.net/p/podofo/tickets/24/attachment/podofo-cmake-3.12.patch + + +--- a/test/TokenizerTest/CMakeLists.txt 2018-07-20 18:26:02.921494293 +0200 ++++ b/test/TokenizerTest/CMakeLists.txt 2018-07-20 18:34:53.727136443 +0200 +@@ -2,10 +2,3 @@ + TARGET_LINK_LIBRARIES(TokenizerTest ${PODOFO_LIB} ${PODOFO_LIB_DEPENDS}) + SET_TARGET_PROPERTIES(TokenizerTest PROPERTIES COMPILE_FLAGS "${PODOFO_CFLAGS}") + ADD_DEPENDENCIES(TokenizerTest ${PODOFO_DEPEND_TARGET}) +- +-# Copy the test samples over to the build tree +-ADD_CUSTOM_COMMAND( +- TARGET TokenizerTest +- POST_BUILD +- COMMAND "${CMAKE_COMMAND}" -E copy_directory "${CMAKE_CURRENT_SOURCE_DIR}/objects" "${CMAKE_CURRENT_BINARY_DIR}/objects" +- ) diff --git a/gnu/packages/patches/python-cffi-x87-stack-clean.patch b/gnu/packages/patches/python-cffi-x87-stack-clean.patch new file mode 100644 index 0000000000..50243505ee --- /dev/null +++ b/gnu/packages/patches/python-cffi-x87-stack-clean.patch @@ -0,0 +1,29 @@ +Fix test that fails on i686: + +https://bitbucket.org/cffi/cffi/issues/382 + +This is a squashed version of these commits: +https://bitbucket.org/cffi/cffi/commits/ef09637b2314 +https://bitbucket.org/cffi/cffi/commits/7a76a3815340 + +diff -r 99940f1f5402 testing/cffi0/test_function.py +--- a/testing/cffi0/test_function.py Tue Feb 27 21:18:33 2018 +0100 ++++ b/testing/cffi0/test_function.py Sun Nov 11 16:26:23 2018 +0100 +@@ -45,14 +45,14 @@ + assert x != math.sin(1.23) # rounding effects + assert abs(x - math.sin(1.23)) < 1E-6 + +- def test_sin_no_return_value(self): ++ def test_lround_no_return_value(self): + # check that 'void'-returning functions work too + ffi = FFI(backend=self.Backend()) + ffi.cdef(""" +- void sin(double x); ++ void lround(double x); + """) + m = ffi.dlopen(lib_m) +- x = m.sin(1.23) ++ x = m.lround(1.23) + assert x is None + + def test_dlopen_filename(self): diff --git a/gnu/packages/patches/python-networkx2-reproducible-build.patch b/gnu/packages/patches/python-networkx2-reproducible-build.patch deleted file mode 100644 index 8274767ab8..0000000000 --- a/gnu/packages/patches/python-networkx2-reproducible-build.patch +++ /dev/null @@ -1,29 +0,0 @@ -From c065b972ed294769a41936d6b9feb336473af5d1 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?G=C3=A1bor=20Boskovits?= <boskovits@gmail.com> -Date: Sat, 4 Nov 2017 15:28:47 +0100 -Subject: Fix SOURCE_DATE_EPOCH ignored bug (#2735) - -* Fix SOURCE_DATE_EPOCH ignored bug - -Fix a bug in networkx/release.py that makes build -non-reproducible. ---- - networkx/release.py | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/networkx/release.py b/networkx/release.py -index e81fc0c0..6322cf0d 100644 ---- a/networkx/release.py -+++ b/networkx/release.py -@@ -135,7 +135,7 @@ def get_revision(): - - def get_info(dynamic=True): - # Date information -- date_info = datetime.datetime.now() -+ date_info = datetime.datetime.utcfromtimestamp(int(os.environ.get('SOURCE_DATE_EPOCH', time.time()))) - date = time.asctime(date_info.timetuple()) - - revision, version, version_info, vcs_info = None, None, None, None --- -2.14.2 - diff --git a/gnu/packages/patches/python-paste-remove-website-test.patch b/gnu/packages/patches/python-paste-remove-website-test.patch deleted file mode 100644 index 93417fbe75..0000000000 --- a/gnu/packages/patches/python-paste-remove-website-test.patch +++ /dev/null @@ -1,21 +0,0 @@ -Remove the test to see if the Python Paste website is up. - -Obviously without network access there is no way for us to check this, and -it's pretty strange to test a project's website when you really mean to test -the project anyhow... - ---- a/tests/test_proxy.py 2016-02-22 19:13:04.040117767 -0800 -+++ b/tests/test_proxy.py 2016-02-22 19:13:04.040117767 -0800 -@@ -1,12 +1,3 @@ - from paste import proxy - from paste.fixture import TestApp - --def test_paste_website(): -- # Not the most robust test... -- # need to test things like POSTing to pages, and getting from pages -- # that don't set content-length. -- app = proxy.Proxy('http://pythonpaste.org') -- app = TestApp(app) -- res = app.get('/') -- assert 'documentation' in res -- diff --git a/gnu/packages/patches/python-pillow-fix-failing-tests.patch b/gnu/packages/patches/python-pillow-fix-failing-tests.patch Binary files differdeleted file mode 100644 index 2575d6f612..0000000000 --- a/gnu/packages/patches/python-pillow-fix-failing-tests.patch +++ /dev/null diff --git a/gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch b/gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch deleted file mode 100644 index 90328cc0eb..0000000000 --- a/gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch +++ /dev/null @@ -1,25 +0,0 @@ -This patch stops a test sometimes failing because of non-determinism. See -https://github.com/scikit-learn/scikit-learn/pull/9542 - -From ff9f6db6e8b59c2b3528c8137ed4054f57c1d7c4 Mon Sep 17 00:00:00 2001 -From: Hanmin Qin <qinhanmin2005@sina.com> -Date: Sun, 13 Aug 2017 22:13:49 +0800 -Subject: [PATCH] add random_state - ---- - sklearn/tests/test_kernel_ridge.py | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/sklearn/tests/test_kernel_ridge.py b/sklearn/tests/test_kernel_ridge.py -index 4750a096ac6..979875870b6 100644 ---- a/sklearn/tests/test_kernel_ridge.py -+++ b/sklearn/tests/test_kernel_ridge.py -@@ -10,7 +10,7 @@ - from sklearn.utils.testing import assert_array_almost_equal - - --X, y = make_regression(n_features=10) -+X, y = make_regression(n_features=10, random_state=0) - Xcsr = sp.csr_matrix(X) - Xcsc = sp.csc_matrix(X) - Y = np.array([y, y]).T diff --git a/gnu/packages/patches/python-testtools.patch b/gnu/packages/patches/python-testtools.patch new file mode 100644 index 0000000000..42536e50f9 --- /dev/null +++ b/gnu/packages/patches/python-testtools.patch @@ -0,0 +1,57 @@ +https://github.com/testing-cabal/testtools/commit/29004731f9c480b7c44a9c2605513d50d372898f.patch +Should be fixed in the next release + +From 29004731f9c480b7c44a9c2605513d50d372898f Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?Miro=20Hron=C4=8Dok?= <miro@hroncok.cz> +Date: Thu, 17 May 2018 17:52:26 +0200 +Subject: [PATCH] Fix the tests on Python 3.7 + +Exception's repr got changed not to include trailing comma + +Fixes https://github.com/testing-cabal/testtools/issues/270 +--- + .travis.yml | 1 + + testtools/tests/matchers/test_exception.py | 11 +++++++++-- + 2 files changed, 10 insertions(+), 2 deletions(-) + +diff --git a/.travis.yml b/.travis.yml +index 7f1f4db7..784608e0 100644 +--- a/.travis.yml ++++ b/.travis.yml +@@ -5,6 +5,7 @@ python: + - "3.4" + - "3.5" + - "3.6" ++ - "3.7-dev" + - "pypy" + + install: +diff --git a/testtools/tests/matchers/test_exception.py b/testtools/tests/matchers/test_exception.py +index 6cd80af1..acd39252 100644 +--- a/testtools/tests/matchers/test_exception.py ++++ b/testtools/tests/matchers/test_exception.py +@@ -32,15 +32,22 @@ class TestMatchesExceptionInstanceInterface(TestCase, TestMatchersInterface): + matches_matches = [error_foo] + matches_mismatches = [error_bar, error_base_foo] + ++ if sys.version_info >= (3, 7): ++ # exception's repr has changed ++ _e = '' ++ else: ++ _e = ',' ++ + str_examples = [ +- ("MatchesException(Exception('foo',))", ++ ("MatchesException(Exception('foo'%s))" % _e, + MatchesException(Exception('foo'))) + ] + describe_examples = [ + ("%r is not a %r" % (Exception, ValueError), + error_base_foo, + MatchesException(ValueError("foo"))), +- ("ValueError('bar',) has different arguments to ValueError('foo',).", ++ ("ValueError('bar'%s) has different arguments to ValueError('foo'%s)." ++ % (_e, _e), + error_bar, + MatchesException(ValueError("foo"))), + ] diff --git a/gnu/packages/patches/python2-CVE-2018-1060.patch b/gnu/packages/patches/python2-CVE-2018-1060.patch deleted file mode 100644 index 5eb7ccfbc9..0000000000 --- a/gnu/packages/patches/python2-CVE-2018-1060.patch +++ /dev/null @@ -1,20 +0,0 @@ -Fix CVE-2018-1060: -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-1060 - -Taken from upstream commit (sans test and NEWS): -https://github.com/python/cpython/commit/e052d40cea15f582b50947f7d906b39744dc62a2 - -diff --git a/Lib/poplib.py b/Lib/poplib.py -index b91e5f72d2ca..a238510b38fc 100644 ---- a/Lib/poplib.py -+++ b/Lib/poplib.py -@@ -274,7 +274,7 @@ def rpop(self, user): - return self._shortcmd('RPOP %s' % user) - - -- timestamp = re.compile(r'\+OK.*(<[^>]+>)') -+ timestamp = re.compile(br'\+OK.[^<]*(<.*>)') - - def apop(self, user, secret): - """Authorisation - diff --git a/gnu/packages/patches/python2-CVE-2018-1061.patch b/gnu/packages/patches/python2-CVE-2018-1061.patch deleted file mode 100644 index 6caab24b4d..0000000000 --- a/gnu/packages/patches/python2-CVE-2018-1061.patch +++ /dev/null @@ -1,20 +0,0 @@ -Fix CVE-2018-1061: - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-1061 - -Taken from upstream commit (sans test and NEWS): -https://github.com/python/cpython/commit/e052d40cea15f582b50947f7d906b39744dc62a2 - -diff --git a/Lib/difflib.py b/Lib/difflib.py -index 1c6fbdbedcb7..788a92df3f89 100644 ---- a/Lib/difflib.py -+++ b/Lib/difflib.py -@@ -1103,7 +1103,7 @@ def _qformat(self, aline, bline, atags, btags): - - import re - --def IS_LINE_JUNK(line, pat=re.compile(r"\s*#?\s*$").match): -+def IS_LINE_JUNK(line, pat=re.compile(r"\s*(?:#\s*)?$").match): - r""" - Return 1 for ignorable line: iff `line` is blank or contains a single '#'. - diff --git a/gnu/packages/patches/qt-5-renameat2.patch b/gnu/packages/patches/qt-5-renameat2.patch new file mode 100644 index 0000000000..036070c7ff --- /dev/null +++ b/gnu/packages/patches/qt-5-renameat2.patch @@ -0,0 +1,35 @@ +Avoid conflicting declaration of 'renameat2' on glibc 2.28 +(see <https://github.com/meta-qt5/meta-qt5/issues/94>.) + +Patch from <https://github.com/meta-qt5/meta-qt5/pull/95> +by Andreas Müller <schnitzeltony@gmail.com>. + +--- + src/corelib/io/qfilesystemengine_unix.cpp | 11 ++++++++++++ + 1 file changed, 11 insertions(+) + +diff --git a/src/corelib/io/qfilesystemengine_unix.cpp b/src/corelib/io/qfilesystemengine_unix.cpp +index be6ce48d0cb..1bf1bebc7f1 100644 +--- a/qtbase/src/corelib/io/qfilesystemengine_unix.cpp ++++ b/qtbase/src/corelib/io/qfilesystemengine_unix.cpp +@@ -98,6 +98,17 @@ extern "C" NSString *NSTemporaryDirectory(); + # define FICLONE _IOW(0x94, 9, int) + #endif + ++// renameat2/statx features for non bootstrapped build ++#ifndef QT_BOOTSTRAPPED ++#ifdef __GLIBC_PREREQ ++# define QT_FEATURE_renameat2 (__GLIBC_PREREQ(2, 28) ? 1 : -1) ++# define QT_FEATURE_statx (__GLIBC_PREREQ(2, 28) ? 1 : -1) ++#else ++# define QT_FEATURE_renameat2 -1 ++# define QT_FEATURE_statx -1 ++#endif ++#endif ++ + # if defined(Q_OS_ANDROID) + // renameat2() and statx() are disabled on Android because quite a few systems + // come with sandboxes that kill applications that make system calls outside a +-- +2.14.4 + diff --git a/gnu/packages/patches/randomjungle-disable-static-build.patch b/gnu/packages/patches/randomjungle-disable-static-build.patch new file mode 100644 index 0000000000..3de6c269fd --- /dev/null +++ b/gnu/packages/patches/randomjungle-disable-static-build.patch @@ -0,0 +1,14 @@ +Drop build time dependency on the static executables. + +--- a/src/Makefile.in 2018-11-25 20:27:10.691508925 +0100 ++++ b/src/Makefile.in 2018-11-25 20:27:43.565631413 +0100 +@@ -34,8 +34,7 @@ + POST_UNINSTALL = : + build_triplet = @build@ + host_triplet = @host@ +-bin_PROGRAMS = rjungle$(EXEEXT) rjungle_static$(EXEEXT) \ +- rjunglesparse$(EXEEXT) rjunglesparse_static$(EXEEXT) ++bin_PROGRAMS = rjungle$(EXEEXT) rjunglesparse$(EXEEXT) + subdir = src + DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in + ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 diff --git a/gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch b/gnu/packages/patches/rust-reproducible-builds.patch index ef7bf53b5d..ef7bf53b5d 100644 --- a/gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch +++ b/gnu/packages/patches/rust-reproducible-builds.patch diff --git a/gnu/packages/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch b/gnu/packages/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch new file mode 100644 index 0000000000..561763dabe --- /dev/null +++ b/gnu/packages/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch @@ -0,0 +1,36 @@ +From: Tobias Geerinckx-Rice <me@tobias.gr> +Date: Sun, 26 Aug 2018 17:24:42 +0200 +Subject: [PATCH] snappy: Add O2 flag in CmakeLists.txt. + +Use ‘-O2’ optimisation when building with CMake, as is already done when +using the Makefile. This patch was copied verbatim from the Snappy +mailing list[0]. + +[0]: <snappy-compression@googlegroups.com> + +From 903c72fb29b2db07b4abc38a5feb83d88f739d80 Mon Sep 17 00:00:00 2001 +From: huangwenjun <huangwenjun-hf@loongson.cn> +Date: Fri, 10 Aug 2018 17:17:35 +0800 +Subject: [PATCH] Add O2 optimize flag in CmakeLists.txt. + +--- + CMakeLists.txt | 3 +++ + 1 file changed, 3 insertions(+) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 62ecd09..29e0cdc 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -6,6 +6,9 @@ set(CMAKE_CXX_STANDARD 11) + set(CMAKE_CXX_STANDARD_REQUIRED ON) + set(CMAKE_CXX_EXTENSIONS OFF) + ++SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -O2") ++SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O2") ++ + # BUILD_SHARED_LIBS is a standard CMake variable, but we declare it here to make + # it prominent in the GUI. + option(BUILD_SHARED_LIBS "Build shared libraries(DLLs)." OFF) +-- +2.1.0 + diff --git a/gnu/packages/patches/swig-guile-gc.patch b/gnu/packages/patches/swig-guile-gc.patch new file mode 100644 index 0000000000..0e745a6247 --- /dev/null +++ b/gnu/packages/patches/swig-guile-gc.patch @@ -0,0 +1,76 @@ +Fix garbage collection for Guile versions >= 2.0.12. This issue showed +up when running the tests on i686-linux. + +Taken from this upstream commit: +https://github.com/swig/swig/commit/38f2ab0c30e369e63bbd0a6152108488d0de68e1 + +diff --git a/Lib/guile/guile_scm_run.swg b/Lib/guile/guile_scm_run.swg +index 274f197158..0d04cb7c62 100644 +--- a/Lib/guile/guile_scm_run.swg ++++ b/Lib/guile/guile_scm_run.swg +@@ -99,6 +99,7 @@ SWIG_Guile_scm2newstr(SCM str, size_t *len) { + static int swig_initialized = 0; + static scm_t_bits swig_tag = 0; + static scm_t_bits swig_collectable_tag = 0; ++static scm_t_bits swig_finalized_tag = 0; + static scm_t_bits swig_destroyed_tag = 0; + static scm_t_bits swig_member_function_tag = 0; + static SCM swig_make_func = SCM_EOL; +@@ -163,7 +164,19 @@ SWIG_Guile_PointerType(SCM object) + } + else scm_wrong_type_arg("SWIG-Guile-PointerType", 1, object); + } +- ++ ++SWIGINTERN int ++SWIG_Guile_IsValidSmob(SCM smob) ++{ ++ /* We do not accept smobs representing destroyed pointers, but we have to ++ allow finalized smobs because Guile >= 2.0.12 sets all smob instances ++ to the 'finalized' type before calling their 'free' function. This change ++ was introduced to Guile in commit 8dff3af087c6eaa83ae0d72aa8b22aef5c65d65d */ ++ return SCM_SMOB_PREDICATE(swig_tag, smob) ++ || SCM_SMOB_PREDICATE(swig_collectable_tag, smob) ++ || SCM_SMOB_PREDICATE(swig_finalized_tag, smob); ++} ++ + SWIGINTERN int + SWIG_Guile_ConvertPtr(SCM s, void **result, swig_type_info *type, int flags) + { +@@ -179,8 +192,7 @@ SWIG_Guile_ConvertPtr(SCM s, void **result, swig_type_info *type, int flags) + *result = SCM_POINTER_VALUE(s); + return SWIG_OK; + #endif /* if SCM_MAJOR_VERSION >= 2 */ +- } else if (SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)) { +- /* we do not accept smobs representing destroyed pointers */ ++ } else if (SWIG_Guile_IsValidSmob(smob)) { + from = (swig_type_info *) SCM_CELL_WORD_2(smob); + if (!from) return SWIG_ERROR; + if (type) { +@@ -239,7 +251,7 @@ SWIG_Guile_MarkPointerNoncollectable(SCM s) + { + SCM smob = SWIG_Guile_GetSmob(s); + if (!SCM_NULLP(smob)) { +- if (SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)) { ++ if (SWIG_Guile_IsValidSmob(smob)) { + SCM_SET_CELL_TYPE(smob, swig_tag); + } + else scm_wrong_type_arg(NULL, 0, s); +@@ -252,7 +264,7 @@ SWIG_Guile_MarkPointerDestroyed(SCM s) + { + SCM smob = SWIG_Guile_GetSmob(s); + if (!SCM_NULLP(smob)) { +- if (SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)) { ++ if (SWIG_Guile_IsValidSmob(smob)) { + SCM_SET_CELL_TYPE(smob, swig_destroyed_tag); + } + else scm_wrong_type_arg(NULL, 0, s); +@@ -419,6 +431,8 @@ SWIG_Guile_Init () + scm_set_smob_print(swig_collectable_tag, print_collectable_swig); + scm_set_smob_equalp(swig_collectable_tag, equalp_swig); + scm_set_smob_free(swig_collectable_tag, free_swig); ++ /* For Guile >= 2.0.12. See libguile/smob.c:clear_smobnum */ ++ swig_finalized_tag = swig_collectable_tag & ~0xff00; + } + if (ensure_smob_tag(swig_module, &swig_destroyed_tag, + "destroyed-swig-pointer", "destroyed-swig-pointer-tag")) { diff --git a/gnu/packages/patches/texinfo-5-perl-compat.patch b/gnu/packages/patches/texinfo-5-perl-compat.patch new file mode 100644 index 0000000000..f16d6b4da8 --- /dev/null +++ b/gnu/packages/patches/texinfo-5-perl-compat.patch @@ -0,0 +1,19 @@ +Fix a deprecation warning with newer Perl that breaks some tests. + +--- a/tp/Texinfo/Parser.pm ++++ b/tp/Texinfo/Parser.pm +@@ -5438,12 +5438,12 @@ + } + } elsif ($command eq 'clickstyle') { + # REMACRO +- if ($line =~ /^\s+@([[:alnum:]][[:alnum:]\-]*)({})?\s*/) { ++ if ($line =~ /^\s+@([[:alnum:]][[:alnum:]\-]*)(\{})?\s*/) { + $args = ['@'.$1]; + $self->{'clickstyle'} = $1 + unless(_ignore_global_commands($self)); + $remaining = $line; +- $remaining =~ s/^\s+@([[:alnum:]][[:alnum:]\-]*)({})?\s*(\@(c|comment)((\@|\s+).*)?)?//; ++ $remaining =~ s/^\s+@([[:alnum:]][[:alnum:]\-]*)(\{})?\s*(\@(c|comment)((\@|\s+).*)?)?//; + $has_comment = 1 if (defined($4)); + } else { + $self->line_error (sprintf($self->__( diff --git a/gnu/packages/patches/texinfo-perl-compat.patch b/gnu/packages/patches/texinfo-perl-compat.patch new file mode 100644 index 0000000000..a7348fde0d --- /dev/null +++ b/gnu/packages/patches/texinfo-perl-compat.patch @@ -0,0 +1,51 @@ +Fix compatibility with newer Perls. + +The first patch is taken from upstream: +https://svn.savannah.gnu.org/viewvc/texinfo?view=revision&revision=8008 + +The second gets rid of a deprecation warning that breaks some tests. +Taken from Fedora: <https://bugzilla.redhat.com/show_bug.cgi?id=1590308>. + +--- trunk/tp/Texinfo/Convert/XSParagraph/xspara.c 2017/04/30 14:57:26 7765 ++++ trunk/tp/Texinfo/Convert/XSParagraph/xspara.c 2018/07/13 15:39:29 8008 +@@ -248,6 +248,11 @@ + + dTHX; + ++#if PERL_VERSION > 27 || (PERL_VERSION == 27 && PERL_SUBVERSION > 8) ++ /* needed due to thread-safe locale handling in newer perls */ ++ switch_to_global_locale(); ++#endif ++ + if (setlocale (LC_CTYPE, "en_US.UTF-8") + || setlocale (LC_CTYPE, "en_US.utf8")) + goto success; +@@ -320,6 +325,10 @@ + { + success: ; + free (utf8_locale); ++#if PERL_VERSION > 27 || (PERL_VERSION == 27 && PERL_SUBVERSION > 8) ++ /* needed due to thread-safe locale handling in newer perls */ ++ sync_locale(); ++#endif + /* + fprintf (stderr, "tried to set LC_CTYPE to UTF-8.\n"); + fprintf (stderr, "character encoding is: %s\n", + +diff -up texinfo-6.5/tp/Texinfo/Parser.pm.orig texinfo-6.5/tp/Texinfo/Parser.pm +--- texinfo-6.5/tp/Texinfo/Parser.pm.orig 2018-06-12 13:40:29.356030136 +0200 ++++ texinfo-6.5/tp/Texinfo/Parser.pm 2018-06-12 13:41:28.357725639 +0200 +@@ -5478,11 +5478,11 @@ sub _parse_special_misc_command($$$$) + } + } elsif ($command eq 'clickstyle') { + # REMACRO +- if ($line =~ /^\s+@([[:alnum:]][[:alnum:]\-]*)({})?\s*/) { ++ if ($line =~ /^\s+@([[:alnum:]][[:alnum:]\-]*)(\{})?\s*/) { + $args = ['@'.$1]; + $self->{'clickstyle'} = $1; + $remaining = $line; +- $remaining =~ s/^\s+@([[:alnum:]][[:alnum:]\-]*)({})?\s*(\@(c|comment)((\@|\s+).*)?)?//; ++ $remaining =~ s/^\s+@([[:alnum:]][[:alnum:]\-]*)(\{})?\s*(\@(c|comment)((\@|\s+).*)?)?//; + $has_comment = 1 if (defined($4)); + } else { + $self->line_error (sprintf($self->__( |