diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 34 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c49b0a9e17..620439f144 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2902,7 +2902,7 @@ distribution, coverage uniformity, strand specificity, etc.") (define-public samtools (package (name "samtools") - (version "1.3") + (version "1.3.1") (source (origin (method url-fetch) @@ -2911,7 +2911,7 @@ distribution, coverage uniformity, strand specificity, etc.") version "/samtools-" version ".tar.bz2")) (sha256 (base32 - "03mnf0mhbfwhqlqfslrhfnw68s3g0fs1as354i9a584mqw1l1smy")))) + "0znnnxc467jbf1as2dpskrjhfh8mbll760j6w6rdkwlwbqsp8gbc")))) (build-system gnu-build-system) (arguments `(#:modules ((ice-9 ftw) @@ -3957,13 +3957,13 @@ BLAST, KEGG, GenBank, MEDLINE and GO.") (define-public r-acsnminer (package (name "r-acsnminer") - (version "0.15.11") + (version "0.16.01.29") (source (origin (method url-fetch) (uri (cran-uri "ACSNMineR" version)) (sha256 (base32 - "1dl4drhjyazwm9wxlm8yfppwvvj4h6jxwmz8kfw5bxpb3jdnsqvy")))) + "1b1243wkncanm1blkqzicjgzb576vzcg4iwinsgn2xqr7f264amf")))) (properties `((upstream-name . "ACSNMineR"))) (build-system r-build-system) (propagated-inputs @@ -4993,7 +4993,7 @@ throughput genetic sequencing data sets using regression methods.") (define-public r-qtl (package (name "r-qtl") - (version "1.38-4") + (version "1.39-5") (source (origin (method url-fetch) @@ -5001,7 +5001,7 @@ throughput genetic sequencing data sets using regression methods.") version ".tar.gz")) (sha256 (base32 - "0rv9xhp8lyldpgwxqirhyjqvg07dr5x4x1x2jpyj37dada9ccyx3")))) + "1grwgvyv7x0dgay1858bg7qf4wk47gpnq7qkqpcda9cn0h970d6f")))) (build-system r-build-system) (home-page "http://rqtl.org/") (synopsis "R package for analyzing QTL experiments in genetics") @@ -5074,3 +5074,31 @@ negative binomial distribution to model the read counts among the samples in the same group, and look for consistent differences between ChIP and control group or two ChIP groups run under different conditions.") (license license:gpl3+))) + +(define-public filevercmp + (let ((commit "1a9b779b93d0b244040274794d402106907b71b7")) + (package + (name "filevercmp") + (version (string-append "0-1." (string-take commit 7))) + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/ekg/filevercmp/archive/" + commit ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0yp5jswf5j2pqc6517x277s4s6h1ss99v57kxw9gy0jkfl3yh450")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; There are no tests to run. + #:phases + (modify-phases %standard-phases + (delete 'configure) ; There is no configure phase. + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (install-file "filevercmp" bin))))))) + (home-page "https://github.com/ekg/filevercmp") + (synopsis "This program compares version strings") + (description "This program compares version strings. It intends to be a +replacement for strverscmp.") + (license license:gpl3+)))) |