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-rw-r--r--gnu/packages/bioinformatics.scm37
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 112d0e577c..2963dd321d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4889,6 +4889,43 @@ subsequent visualization, annotation and storage of results.")
;; LGPLv2.1+
(license (list license:gpl2 license:lgpl2.1+))))
+(define-public plink-ng
+ (package (inherit plink)
+ (name "plink-ng")
+ (version "1.90b4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/chrchang/plink-ng/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32 "09ixrds009aczjswxr2alcb774mksq5g0v78dgjjn1h4dky0kf9a"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:tests? #f ;no "check" target
+ #:make-flags (list "BLASFLAGS=-llapack -lopenblas"
+ "CFLAGS=-Wall -O2 -DDYNAMIC_ZLIB=1"
+ "ZLIB=-lz"
+ "-f" "Makefile.std")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _ (chdir "1.9") #t))
+ (delete 'configure) ; no "configure" script
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out")
+ "/bin/")))
+ (install-file "plink" bin)
+ #t))))))
+ (inputs
+ `(("zlib" ,zlib)
+ ("lapack" ,lapack)
+ ("openblas" ,openblas)))
+ (home-page "https://www.cog-genomics.org/plink/")
+ (license license:gpl3+)))
+
(define-public smithlab-cpp
(let ((revision "1")
(commit "728a097bec88c6f4b8528b685932049e660eff2e"))