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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-01-16 12:21:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-01-17 21:46:50 +0100 |
| commit | 11879284cbbcc045029f328b7a20a4af4796cb2c (patch) | |
| tree | 89142f699457f344aa4c80e3336daa7815704ebe /gnu | |
| parent | 6a67e181ac5fcf0fc19a5b4a247e1680e112d3ca (diff) | |
| download | gnu-guix-11879284cbbcc045029f328b7a20a4af4796cb2c.tar gnu-guix-11879284cbbcc045029f328b7a20a4af4796cb2c.tar.gz | |
gnu: Add r-msnbase.
* gnu/packages/bioinformatics.scm (r-msnbase): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bc7b0be1a5..abe5c92949 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8422,3 +8422,44 @@ accurate missing value estimation. A set of methods for printing and plotting the results is also provided. All PCA methods make use of the same data structure (pcaRes) to provide a common interface to the PCA results.") (license license:gpl3+))) + +(define-public r-msnbase + (package + (name "r-msnbase") + (version "2.0.2") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MSnbase" version)) + (sha256 + (base32 + "0jjjs29dcwsjaxzfqxy98ycpg3rwxzzchkj77my3cjgdc00sm66n")))) + (properties `((upstream-name . "MSnbase"))) + (build-system r-build-system) + (propagated-inputs + `(("r-affy" ,r-affy) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-digest" ,r-digest) + ("r-ggplot2" ,r-ggplot2) + ("r-impute" ,r-impute) + ("r-iranges" ,r-iranges) + ("r-maldiquant" ,r-maldiquant) + ("r-mzid" ,r-mzid) + ("r-mzr" ,r-mzr) + ("r-pcamethods" ,r-pcamethods) + ("r-plyr" ,r-plyr) + ("r-preprocesscore" ,r-preprocesscore) + ("r-protgenerics" ,r-protgenerics) + ("r-rcpp" ,r-rcpp) + ("r-reshape2" ,r-reshape2) + ("r-s4vectors" ,r-s4vectors) + ("r-vsn" ,r-vsn) + ("r-xml" ,r-xml))) + (home-page "https://github.com/lgatto/MSnbase") + (synopsis "Base functions and classes for MS-based proteomics") + (description + "This package provides basic plotting, data manipulation and processing +of MS-based proteomics data.") + (license license:artistic2.0))) |