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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 15:41:23 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:43 +0100
commite2b927993efc9254a941d035fb17f9ebaf330eac (patch)
tree8da26fbfad5da3d42bbbe8b4d665156f3799446e /gnu
parent96a392a0b2511bcea94f382b1dd36a189b3f856e (diff)
downloadgnu-guix-e2b927993efc9254a941d035fb17f9ebaf330eac.tar
gnu-guix-e2b927993efc9254a941d035fb17f9ebaf330eac.tar.gz
gnu: Add r-gqtlbase.
* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm35
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f130d71327..2200842164 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9792,6 +9792,41 @@ gene identifier conversion and mapping homologous genes across related
organisms via the @code{g:Profiler} toolkit.")
(license license:gpl2+)))
+(define-public r-gqtlbase
+ (package
+ (name "r-gqtlbase")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "gQTLBase" version))
+ (sha256
+ (base32
+ "1756vfcj2dkkgcmfkkg7qdaig36dv9gfvpypn9rbrky56wm1p035"))))
+ (properties `((upstream-name . "gQTLBase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-batchjobs" ,r-batchjobs)
+ ("r-bbmisc" ,r-bbmisc)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-bit" ,r-bit)
+ ("r-doparallel" ,r-doparallel)
+ ("r-ff" ,r-ff)
+ ("r-ffbase" ,r-ffbase)
+ ("r-foreach" ,r-foreach)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/gQTLBase")
+ (synopsis "Infrastructure for eQTL, mQTL and similar studies")
+ (description
+ "The purpose of this package is to simplify the storage and interrogation
+of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
+and more.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")