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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 15:47:14 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:43 +0100
commitb52a866d149112134fa4c314968a795fe73533b1 (patch)
tree2c41ec56a6eac84d2184a9364bfabe8f475e258d /gnu
parentdd5fc8b78ec5e1bcef35eae409c8faa9b88b6aa3 (diff)
downloadgnu-guix-b52a866d149112134fa4c314968a795fe73533b1.tar
gnu-guix-b52a866d149112134fa4c314968a795fe73533b1.tar.gz
gnu: Add r-org-hs-eg-db.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a08f06ada7..b58764c6c9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9854,6 +9854,33 @@ and more.")
the earlier snpMatrix package, allowing for uncertainty in genotypes.")
(license license:gpl3)))
+(define-public r-org-hs-eg-db
+ (package
+ (name "r-org-hs-eg-db")
+ (version "3.4.2")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "org.Hs.eg.db_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0izzmas99j64sc4x8pxi09xw0ra1941kjrsl8sjxl0cjw1d2b32z"))))
+ (properties
+ `((upstream-name . "org.Hs.eg.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://bioconductor.org/packages/org.Hs.eg.db/")
+ (synopsis "Genome-wide annotation for Human")
+ (description
+ "This package contains genome-wide annotations for Human, primarily based
+on mapping using Entrez Gene identifiers.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")