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authorMark H Weaver <mhw@netris.org>2016-10-12 09:28:14 -0400
committerMark H Weaver <mhw@netris.org>2016-10-12 09:28:14 -0400
commitabcf4858cda9ded59671681ab9820b5358d8bb16 (patch)
treefd1b0a53affad3ad0eb9b3867a2c127228530973 /gnu
parent82adf4952ac1c03af3b41851ef4bbe1d2d6935a0 (diff)
parentbfb48f4f33583f58392a05f1d6cbf559156293ed (diff)
downloadgnu-guix-abcf4858cda9ded59671681ab9820b5358d8bb16.tar
gnu-guix-abcf4858cda9ded59671681ab9820b5358d8bb16.tar.gz
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu')
-rw-r--r--gnu/local.mk36
-rw-r--r--gnu/packages/admin.scm14
-rw-r--r--gnu/packages/astronomy.scm6
-rw-r--r--gnu/packages/audio.scm39
-rw-r--r--gnu/packages/autogen.scm9
-rw-r--r--gnu/packages/bash.scm6
-rw-r--r--gnu/packages/bioinformatics.scm58
-rw-r--r--gnu/packages/bootstrap.scm1
-rw-r--r--gnu/packages/calendar.scm4
-rw-r--r--gnu/packages/ccache.scm4
-rw-r--r--gnu/packages/certs.scm4
-rw-r--r--gnu/packages/check.scm12
-rw-r--r--gnu/packages/databases.scm82
-rw-r--r--gnu/packages/dav.scm4
-rw-r--r--gnu/packages/dejagnu.scm75
-rw-r--r--gnu/packages/emacs.scm51
-rw-r--r--gnu/packages/embedded.scm165
-rw-r--r--gnu/packages/fonts.scm24
-rw-r--r--gnu/packages/fontutils.scm13
-rw-r--r--gnu/packages/fpga.scm311
-rw-r--r--gnu/packages/freeipmi.scm6
-rw-r--r--gnu/packages/games.scm24
-rw-r--r--gnu/packages/gcc.scm7
-rw-r--r--gnu/packages/gdb.scm6
-rw-r--r--gnu/packages/gnome.scm1
-rw-r--r--gnu/packages/gnupg.scm25
-rw-r--r--gnu/packages/gnuzilla.scm113
-rw-r--r--gnu/packages/guile.scm1
-rw-r--r--gnu/packages/haskell.scm200
-rw-r--r--gnu/packages/image.scm5
-rw-r--r--gnu/packages/irc.scm42
-rw-r--r--gnu/packages/libupnp.scm2
-rw-r--r--gnu/packages/linux.scm78
-rw-r--r--gnu/packages/lisp.scm584
-rw-r--r--gnu/packages/lynx.scm34
-rw-r--r--gnu/packages/mail.scm4
-rw-r--r--gnu/packages/man.scm4
-rw-r--r--gnu/packages/maths.scm37
-rw-r--r--gnu/packages/messaging.scm58
-rw-r--r--gnu/packages/music.scm56
-rw-r--r--gnu/packages/ncdu.scm10
-rw-r--r--gnu/packages/patches/clx-remove-demo.patch27
-rw-r--r--gnu/packages/patches/hdf-eos5-build-shared.patch31
-rw-r--r--gnu/packages/patches/hdf-eos5-fix-szip.patch30
-rw-r--r--gnu/packages/patches/hdf-eos5-fortrantests.patch156
-rw-r--r--gnu/packages/patches/hdf-eos5-remove-gctp.patch55
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch62
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch29
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch18
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch61
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch266
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch17
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch33
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch267
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch188
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2819.patch102
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2821.patch16
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2824.patch85
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2828.patch185
-rw-r--r--gnu/packages/patches/icecat-CVE-2016-2831.patch120
-rw-r--r--gnu/packages/patches/icecat-avoid-bundled-includes.patch35
-rw-r--r--gnu/packages/patches/icecat-avoid-bundled-libraries.patch50
-rw-r--r--gnu/packages/patches/libupnp-CVE-2016-6255.patch50
-rw-r--r--gnu/packages/patches/qemu-CVE-2016-8576.patch62
-rw-r--r--gnu/packages/patches/qemu-CVE-2016-8577.patch36
-rw-r--r--gnu/packages/patches/qemu-CVE-2016-8578.patch27
-rw-r--r--gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch32
-rw-r--r--gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch51
-rw-r--r--gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch54
-rw-r--r--gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch34
-rw-r--r--gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch82
-rw-r--r--gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch51
-rw-r--r--gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch82
-rw-r--r--gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch62
-rw-r--r--gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch50
-rw-r--r--gnu/packages/python.scm37
-rw-r--r--gnu/packages/qemu.scm5
-rw-r--r--gnu/packages/ruby.scm20
-rw-r--r--gnu/packages/samba.scm18
-rw-r--r--gnu/packages/scanner.scm9
-rw-r--r--gnu/packages/ssh.scm65
-rw-r--r--gnu/packages/statistics.scm4
-rw-r--r--gnu/packages/tbb.scm6
-rw-r--r--gnu/packages/video.scm4
-rw-r--r--gnu/packages/web.scm40
-rw-r--r--gnu/services/xorg.scm2
86 files changed, 2580 insertions, 2351 deletions
diff --git a/gnu/local.mk b/gnu/local.mk
index c7cd72fba3..1acf949a2f 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -111,6 +111,7 @@ GNU_SYSTEM_MODULES = \
%D%/packages/education.scm \
%D%/packages/elf.scm \
%D%/packages/elixir.scm \
+ %D%/packages/embedded.scm \
%D%/packages/emacs.scm \
%D%/packages/enchant.scm \
%D%/packages/engineering.scm \
@@ -128,6 +129,7 @@ GNU_SYSTEM_MODULES = \
%D%/packages/fltk.scm \
%D%/packages/fonts.scm \
%D%/packages/fontutils.scm \
+ %D%/packages/fpga.scm \
%D%/packages/freedesktop.scm \
%D%/packages/freeipmi.scm \
%D%/packages/ftp.scm \
@@ -477,6 +479,7 @@ dist_patch_DATA = \
%D%/packages/patches/clang-libc-search-path.patch \
%D%/packages/patches/clang-3.8-libc-search-path.patch \
%D%/packages/patches/clucene-pkgconfig.patch \
+ %D%/packages/patches/clx-remove-demo.patch \
%D%/packages/patches/cmake-fix-tests.patch \
%D%/packages/patches/cpio-CVE-2016-2037.patch \
%D%/packages/patches/cpufrequtils-fix-aclocal.patch \
@@ -570,27 +573,17 @@ dist_patch_DATA = \
%D%/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch \
%D%/packages/patches/gtkglext-disable-disable-deprecated.patch \
%D%/packages/patches/hdf5-config-date.patch \
+ %D%/packages/patches/hdf-eos5-build-shared.patch \
+ %D%/packages/patches/hdf-eos5-remove-gctp.patch \
+ %D%/packages/patches/hdf-eos5-fix-szip.patch \
+ %D%/packages/patches/hdf-eos5-fortrantests.patch \
%D%/packages/patches/higan-remove-march-native-flag.patch \
%D%/packages/patches/hop-bigloo-4.0b.patch \
%D%/packages/patches/hop-linker-flags.patch \
%D%/packages/patches/hydra-disable-darcs-test.patch \
%D%/packages/patches/hypre-doc-tables.patch \
%D%/packages/patches/hypre-ldflags.patch \
- %D%/packages/patches/icecat-avoid-bundled-includes.patch \
- %D%/packages/patches/icecat-CVE-2016-2818-pt1.patch \
- %D%/packages/patches/icecat-CVE-2016-2818-pt2.patch \
- %D%/packages/patches/icecat-CVE-2016-2818-pt3.patch \
- %D%/packages/patches/icecat-CVE-2016-2818-pt4.patch \
- %D%/packages/patches/icecat-CVE-2016-2818-pt5.patch \
- %D%/packages/patches/icecat-CVE-2016-2818-pt6.patch \
- %D%/packages/patches/icecat-CVE-2016-2818-pt7.patch \
- %D%/packages/patches/icecat-CVE-2016-2818-pt8.patch \
- %D%/packages/patches/icecat-CVE-2016-2818-pt9.patch \
- %D%/packages/patches/icecat-CVE-2016-2819.patch \
- %D%/packages/patches/icecat-CVE-2016-2821.patch \
- %D%/packages/patches/icecat-CVE-2016-2824.patch \
- %D%/packages/patches/icecat-CVE-2016-2828.patch \
- %D%/packages/patches/icecat-CVE-2016-2831.patch \
+ %D%/packages/patches/icecat-avoid-bundled-libraries.patch \
%D%/packages/patches/icu4c-CVE-2014-6585.patch \
%D%/packages/patches/icu4c-CVE-2015-1270.patch \
%D%/packages/patches/icu4c-CVE-2015-4760.patch \
@@ -656,6 +649,7 @@ dist_patch_DATA = \
%D%/packages/patches/libtiff-oob-write-in-nextdecode.patch \
%D%/packages/patches/libtool-skip-tests2.patch \
%D%/packages/patches/libunwind-CVE-2015-3239.patch \
+ %D%/packages/patches/libupnp-CVE-2016-6255.patch \
%D%/packages/patches/libvpx-CVE-2016-2818.patch \
%D%/packages/patches/libwmf-CAN-2004-0941.patch \
%D%/packages/patches/libwmf-CVE-2006-3376.patch \
@@ -787,6 +781,9 @@ dist_patch_DATA = \
%D%/packages/patches/python-paste-remove-website-test.patch \
%D%/packages/patches/python-paste-remove-timing-test.patch \
%D%/packages/patches/python2-pygobject-2-gi-info-type-error-domain.patch \
+ %D%/packages/patches/qemu-CVE-2016-8576.patch \
+ %D%/packages/patches/qemu-CVE-2016-8577.patch \
+ %D%/packages/patches/qemu-CVE-2016-8578.patch \
%D%/packages/patches/qt4-ldflags.patch \
%D%/packages/patches/quickswitch-fix-dmenu-check.patch \
%D%/packages/patches/rapicorn-isnan.patch \
@@ -875,15 +872,6 @@ dist_patch_DATA = \
%D%/packages/patches/wordnet-CVE-2008-2149.patch \
%D%/packages/patches/wordnet-CVE-2008-3908-pt1.patch \
%D%/packages/patches/wordnet-CVE-2008-3908-pt2.patch \
- %D%/packages/patches/wpa-supplicant-CVE-2015-5310.patch \
- %D%/packages/patches/wpa-supplicant-CVE-2015-5314.patch \
- %D%/packages/patches/wpa-supplicant-CVE-2015-5315.patch \
- %D%/packages/patches/wpa-supplicant-CVE-2015-5316.patch \
- %D%/packages/patches/wpa-supplicant-CVE-2016-4476.patch \
- %D%/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch \
- %D%/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch \
- %D%/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch \
- %D%/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch \
%D%/packages/patches/xdotool-fix-makefile.patch \
%D%/packages/patches/xf86-video-ark-remove-mibstore.patch \
%D%/packages/patches/xf86-video-ast-remove-mibstore.patch \
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index f608259382..9724c9b652 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -862,7 +862,7 @@ commands and their arguments.")
(define-public wpa-supplicant-minimal
(package
(name "wpa-supplicant-minimal")
- (version "2.5")
+ (version "2.6")
(source (origin
(method url-fetch)
(uri (string-append
@@ -871,17 +871,7 @@ commands and their arguments.")
".tar.gz"))
(sha256
(base32
- "05mkp5bx1c3z7h5biddsv0p49gkrq9ksany3anp4wdiv92p5prfc"))
- (patches
- (search-patches "wpa-supplicant-CVE-2015-5310.patch"
- "wpa-supplicant-CVE-2015-5314.patch"
- "wpa-supplicant-CVE-2015-5315.patch"
- "wpa-supplicant-CVE-2015-5316.patch"
- "wpa-supplicant-CVE-2016-4476.patch"
- "wpa-supplicant-CVE-2016-4477-pt1.patch"
- "wpa-supplicant-CVE-2016-4477-pt2.patch"
- "wpa-supplicant-CVE-2016-4477-pt3.patch"
- "wpa-supplicant-CVE-2016-4477-pt4.patch"))))
+ "0l0l5gz3d5j9bqjsbjlfcv4w4jwndllp9fmyai4x9kg6qhs6v4xl"))))
(build-system gnu-build-system)
(arguments
'(#:phases (alist-replace
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0c29a39a54..c1b15e1dee 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -87,7 +87,7 @@ systems in a FITS image header.")
(define-public gnuastro
(package
(name "gnuastro")
- (version "0.1")
+ (version "0.2")
(source
(origin
(method url-fetch)
@@ -95,14 +95,14 @@ systems in a FITS image header.")
version ".tar.gz"))
(sha256
(base32
- "105s007kw8l3jwwhvh8k9lgbpfbf7sqh2wpxmvpv3qdr6nh9lnjg"))))
+ "0099g7zqg1gr9y94ybhyjgx9pkn9zv4rj1xb00fkybfw8w6ij9iv"))))
(inputs
`(("cfitsio" ,cfitsio)
("gsl" ,gsl)
("libjpeg" ,libjpeg-8)
("wcslib" ,wcslib)))
(build-system gnu-build-system)
- (home-page "http://www.gnu.org/software/gnuastro")
+ (home-page "https://www.gnu.org/software/gnuastro")
(synopsis "Astronomical data manipulation programs")
(description "The GNU Astronomy Utilities (Gnuastro) is a suite of
programs for the manipulation and analysis of astronomical data.")
diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index 192fb0e231..781e7fac29 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -40,6 +40,7 @@
#:use-module (gnu packages autotools)
#:use-module (gnu packages avahi)
#:use-module (gnu packages boost)
+ #:use-module (gnu packages backup)
#:use-module (gnu packages base)
#:use-module (gnu packages bison)
#:use-module (gnu packages check)
@@ -179,7 +180,7 @@ streams from live audio.")
(define-public ardour
(package
(name "ardour")
- (version "5.3")
+ (version "5.4")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -193,10 +194,10 @@ streams from live audio.")
"libs/ardour/revision.cc"
(lambda (port)
(format port "#include \"ardour/revision.h\"
-namespace ARDOUR { const char* revision = \"5.3\" ; }"))))
+namespace ARDOUR { const char* revision = \"5.4\" ; }"))))
(sha256
(base32
- "0xdyc3syxg4drg7rafadhlrn6nycg169ay6q5xhga19kcwy6qmqm"))
+ "1yrg0d86k9fqw7lmzjglilbadb4cjqxqkf6ii4bjs6rihj6b0qrf"))
(file-name (string-append name "-" version))))
(build-system waf-build-system)
(arguments
@@ -242,6 +243,7 @@ namespace ARDOUR { const char* revision = \"5.3\" ; }"))))
("readline" ,readline)
("redland" ,redland)
("rubberband" ,rubberband)
+ ("libarchive" ,libarchive)
("taglib" ,taglib)
("python-rdflib" ,python-rdflib)))
(native-inputs
@@ -336,6 +338,37 @@ tools (analyzer, mono/stereo tools, crossovers).")
;; The plugins are released under LGPLv2.1+
(license (list license:lgpl2.1+ license:gpl2+))))
+(define-public infamous-plugins
+ (package
+ (name "infamous-plugins")
+ (version "0.2.02")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ssj71/infamousPlugins/"
+ "archive/v" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0qm3ak07vc1l3f5c3c2lq9gkfknlxwn8ks03cysw1pk8hj7dwnv6"))))
+ (build-system cmake-build-system)
+ ;; There are no tests
+ (arguments `(#:tests? #f))
+ (inputs
+ `(("cairo" ,cairo)
+ ("fftwf" ,fftwf)
+ ("lv2" ,lv2)
+ ("ntk" ,ntk)
+ ("zita-resampler" ,zita-resampler)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (home-page "http://ssj71.github.io/infamousPlugins")
+ (synopsis "LV2 plugins for live use")
+ (description
+ "The infamous plugins are a collection of LV2 audio plugins for live
+performances. The plugins include a cellular automaton synthesizer, an
+envelope follower, distortion effects, tape effects and more.")
+ (license license:gpl2+)))
+
(define-public csound
(package
(name "csound")
diff --git a/gnu/packages/autogen.scm b/gnu/packages/autogen.scm
index 4cbc215070..f3ab30b10a 100644
--- a/gnu/packages/autogen.scm
+++ b/gnu/packages/autogen.scm
@@ -31,7 +31,7 @@
(define-public autogen
(package
(name "autogen")
- (version "5.18.10")
+ (version "5.18.12")
(source
(origin
(method url-fetch)
@@ -39,7 +39,7 @@
"/autogen-" version ".tar.xz"))
(sha256
(base32
- "0j61mf3qab5ya7w5xsp7xalrby00cv92g462bxffl104ql18w92f"))))
+ "1n5zq4872sakvz9c7ncsdcfp0z8rsybsxvbmhkpbd19ii0pacfxy"))))
(build-system gnu-build-system)
(native-inputs `(("perl" ,perl) ;for doc generator mdoc
("pkg-config" ,pkg-config)))
@@ -55,8 +55,9 @@
(append (find-files "agen5/test" "\\.test$")
(find-files "autoopts/test" "\\.(test|in)$"))
(("/bin/sh") sh)
- (("/usr/bin/tr") "tr"))))))))
- (home-page "http://www.gnu.org/software/autogen/")
+ (("/usr/bin/tr") "tr"))
+ #t))))))
+ (home-page "https://www.gnu.org/software/autogen/")
(synopsis "Automated program generator")
(description
"AutoGen is a program to ease the maintenance of programs that contain
diff --git a/gnu/packages/bash.scm b/gnu/packages/bash.scm
index 01168ade16..c12c0ac9a0 100644
--- a/gnu/packages/bash.scm
+++ b/gnu/packages/bash.scm
@@ -238,7 +238,7 @@ without modification.")
(define-public bash-completion
(package
(name "bash-completion")
- (version "2.3")
+ (version "2.4")
(source (origin
(method url-fetch)
(uri (string-append
@@ -246,7 +246,7 @@ without modification.")
version "/" name "-" version ".tar.xz"))
(sha256
(base32
- "1sg82nmsr00ig37skln2qvmi8mgbxgdvycm3ygzs8gbz66pq3q5j"))
+ "1xlhd09sb2w3bw8qaypxgkr0782w082mcbx8zf7yzjgy0996pxy0"))
(patches
(search-patches "bash-completion-directories.patch"))))
(build-system gnu-build-system)
@@ -279,7 +279,7 @@ without modification.")
(description
"This package provides extensions that allow Bash to provide adapted
completion for many common commands.")
- (home-page "http://bash-completion.alioth.debian.org/")
+ (home-page "https://github.com/scop/bash-completion")
(license gpl2+)))
(define-public bash-tap
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ac46fe4bcc..5fbfdf0b9b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1972,7 +1972,25 @@ trees (phylogenies) and characters.")
(let ((base (package-with-python2 (strip-python2-variant python-dendropy))))
(package
(inherit base)
+ ;; Do not use same source as 'python-dendropy' because the patched
+ ;; failing tests do not occur on Python 2.
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "DendroPy" (package-version base)))
+ (sha256
+ (base32
+ "1jfz7gp18wph311w1yygbvjanb3n5mdqal439bb6myw41dwb5m63"))))
+ (arguments
+ `(#:python ,python-2
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ ;; There is currently a test failure that only happens on some
+ ;; systems, and only using "setup.py test"
+ (lambda _ (zero? (system* "nosetests")))))))
(native-inputs `(("python2-setuptools" ,python2-setuptools)
+ ("python2-nose" ,python2-nose)
,@(package-native-inputs base))))))
@@ -2019,7 +2037,7 @@ identify enrichments with functional annotations of the genome.")
(define-public diamond
(package
(name "diamond")
- (version "0.8.22")
+ (version "0.8.23")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2028,7 +2046,7 @@ identify enrichments with functional annotations of the genome.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0lbqa07c5z8pr4dvdrc14rqc4311kq69j1ldry9glfc8hg3x1kd1"))))
+ "0xpcq3fbk4c52xbpgyk5brl58rljvl83bg8nkxy8vs00pxanm7i2"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ; no "check" target
@@ -5576,7 +5594,7 @@ track. The database is exposed as a @code{TxDb} object.")
(define-public vsearch
(package
(name "vsearch")
- (version "2.1.2")
+ (version "2.3.0")
(source
(origin
(method url-fetch)
@@ -5586,7 +5604,7 @@ track. The database is exposed as a @code{TxDb} object.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1zzfj6ydsfzljyswlwqknpp8s2cf31vimi1aqf9ljsbagjyizc58"))
+ "1r8fk3whkil348y5hfsd4r56qjmchhq4nxm6s7ra5rlisw0mf9fy"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -6929,6 +6947,38 @@ elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
+(define-public r-bsgenome-celegans-ucsc-ce10
+ (package
+ (name "r-bsgenome-celegans-ucsc-ce10")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Celegans.UCSC.ce10_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
+ (properties
+ `((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "http://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
+ (synopsis "Full genome sequences for Worm")
+ (description
+ "This package provides full genome sequences for Caenorhabditis
+elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
+objects.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-dmelanogaster-ucsc-dm3
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm3")
diff --git a/gnu/packages/bootstrap.scm b/gnu/packages/bootstrap.scm
index f47a343ca6..f6faba3188 100644
--- a/gnu/packages/bootstrap.scm
+++ b/gnu/packages/bootstrap.scm
@@ -171,6 +171,7 @@ successful, or false to signal an error."
;; XXX: This one is used bare-bones, without a libc, so add a case
;; here just so we can keep going.
+ ((string=? system "arm-eabi") "no-ld.so")
((string=? system "xtensa-elf") "no-ld.so")
((string=? system "avr") "no-ld.so")
((string=? system "i686-mingw") "no-ld.so")
diff --git a/gnu/packages/calendar.scm b/gnu/packages/calendar.scm
index 0c37caa8e8..306c949066 100644
--- a/gnu/packages/calendar.scm
+++ b/gnu/packages/calendar.scm
@@ -84,13 +84,13 @@ data units.")
(define-public khal
(package
(name "khal")
- (version "0.8.3")
+ (version "0.8.4")
(source (origin
(method url-fetch)
(uri (pypi-uri "khal" version))
(sha256
(base32
- "1qryqs5d8jsl7j22pjjfkfdi4m8m3nn3n44b890pq85xkw599ihy"))))
+ "03vy4dp9n43w51mwqjjy08dr5nj7wxqnb085visz3j43vzm42p1f"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
diff --git a/gnu/packages/ccache.scm b/gnu/packages/ccache.scm
index 48ed860724..15a20ff08b 100644
--- a/gnu/packages/ccache.scm
+++ b/gnu/packages/ccache.scm
@@ -29,7 +29,7 @@
(define-public ccache
(package
(name "ccache")
- (version "3.3.1")
+ (version "3.3.2")
(source
(origin
(method url-fetch)
@@ -37,7 +37,7 @@
version ".tar.xz"))
(sha256
(base32
- "1ij1p8arz72fw67gx65ngb7jmg30ynjxk7i8dmikjxkdri4pmn66"))))
+ "0c25l78hi36682l9cyxca78i8sdkmgmv9afip1s21y6q4g5qaxlh"))))
(build-system gnu-build-system)
(native-inputs `(("perl" ,perl) ;for test.sh
("which" ,(@ (gnu packages base) which))))
diff --git a/gnu/packages/certs.scm b/gnu/packages/certs.scm
index f010fabc86..b27577bbec 100644
--- a/gnu/packages/certs.scm
+++ b/gnu/packages/certs.scm
@@ -73,7 +73,7 @@
(define-public nss-certs
(package
(name "nss-certs")
- (version "3.26")
+ (version "3.27.1")
(source (origin
(method url-fetch)
(uri (let ((version-with-underscores
@@ -84,7 +84,7 @@
"nss-" version ".tar.gz")))
(sha256
(base32
- "0r65s5q8kk0vr48s0zr8xi610k7h072lgkkpp4z6jlxr19bkly4i"))))
+ "0sraxk26swlgl7rl742rkfp5k251v5z3lqw9k8ikin0cjfhkfdpx"))))
(build-system gnu-build-system)
(outputs '("out"))
(native-inputs
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 95c80438e9..b394571d6f 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -26,6 +26,7 @@
#:use-module (gnu packages)
#:use-module (gnu packages autotools)
#:use-module (gnu packages python)
+ #:use-module (guix utils)
#:use-module (guix licenses)
#:use-module (guix packages)
#:use-module (guix download)
@@ -155,14 +156,15 @@ multi-paradigm automated test framework for C++ and Objective-C.")
(define-public cmocka
(package
(name "cmocka")
- (version "1.0.1")
+ (version "1.1.0")
(source (origin
(method url-fetch)
- (uri (string-append "https://cmocka.org/files/1.0/cmocka-"
+ (uri (string-append "https://cmocka.org/files/"
+ (version-major+minor version) "/cmocka-"
version ".tar.xz"))
(sha256
(base32
- "0fvm6rdalqcxckbddch8ycdw6n2ckldblv117n09chi2l7bm0q5k"))))
+ "0c0k8ax16fgh39nsva09q4jsh83g9nxihkwj9d5666763fzx6q79"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f)) ; No test target
@@ -178,13 +180,13 @@ format.")
(define-public cppcheck
(package
(name "cppcheck")
- (version "1.72")
+ (version "1.76")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/danmar/cppcheck/archive/"
version ".tar.gz"))
(sha256
- (base32 "0zxaixhqi4vmj7xj56gzadggcbjhbjjm6abyr86qlan23sg98667"))
+ (base32 "14d0ikcmq1xcqy9f1vq1jbn5ifl0jiy3rycqdcg7v8hil48m59z8"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system cmake-build-system)
(home-page "http://cppcheck.sourceforge.net")
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 8970ea1c03..b7bd1f0cd6 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -12,6 +12,7 @@
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016 David Craven <david@craven.ch>
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -34,11 +35,13 @@
#:use-module (gnu packages avahi)
#:use-module (gnu packages bash)
#:use-module (gnu packages boost)
+ #:use-module (gnu packages crypto)
#:use-module (gnu packages gettext)
#:use-module (gnu packages glib)
#:use-module (gnu packages perl)
#:use-module (gnu packages language)
#:use-module (gnu packages linux)
+ #:use-module (gnu packages tcl)
#:use-module (gnu packages tls)
#:use-module (gnu packages compression)
#:use-module (gnu packages ncurses)
@@ -541,32 +544,32 @@ is in the public domain.")
(define-public tdb
(package
(name "tdb")
- (version "1.3.9")
+ (version "1.3.11")
(source (origin
(method url-fetch)
(uri (string-append "https://www.samba.org/ftp/tdb/tdb-"
version ".tar.gz"))
(sha256
(base32
- "1ll4q17scax1arg12faj8p25jq1f7q9irc3pwla0ziymwqkgf0bi"))))
+ "0i1l38h0vyck6zkcj4fn2l03spadlmyr1qa1xpdp9dy2ccbm3s1r"))))
(build-system gnu-build-system)
(arguments
- '(#:phases (alist-replace
- 'configure
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- ;; The 'configure' script is a wrapper for Waf and
- ;; doesn't recognize things like '--enable-fast-install'.
- (zero? (system* "./configure"
- (string-append "--prefix=" out)))))
- %standard-phases)))
+ '(#:phases
+ (modify-phases %standard-phases
+ (replace 'configure
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ ;; The 'configure' script is a wrapper for Waf and
+ ;; doesn't recognize things like '--enable-fast-install'.
+ (zero? (system* "./configure"
+ (string-append "--prefix=" out)))))))))
(native-inputs
`(;; TODO: Build the documentation.
;; ("docbook-xsl" ,docbook-xsl)
;; ("libxml2" ,libxml2)
;; ("libxslt" ,libxslt)
("python" ,python-2))) ;for the Waf build system
- (home-page "http://tdb.samba.org/")
+ (home-page "https://tdb.samba.org/")
(synopsis "Trivial database")
(description
"TDB is a Trivial Database. In concept, it is very much like GDBM,
@@ -951,14 +954,14 @@ similar to BerkeleyDB, LevelDB, etc.")
(define-public redis
(package
(name "redis")
- (version "3.2.3")
+ (version "3.2.4")
(source (origin
(method url-fetch)
(uri (string-append "http://download.redis.io/releases/redis-"
version".tar.gz"))
(sha256
(base32
- "05az2g3gna5lkhh6x1a5m6yardbiig1l4ysggldlk5if8ww9qkk7"))))
+ "1wb9jd692a0y52bkkxr6815kk4g039mirjdrvqx24265lv2l5l1a"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ; tests related to master/slave and replication fail
@@ -966,6 +969,7 @@ similar to BerkeleyDB, LevelDB, etc.")
(delete 'configure))
#:make-flags `("CC=gcc"
"MALLOC=libc"
+ "LDFLAGS=-ldl"
,(string-append "PREFIX="
(assoc-ref %outputs "out")))))
(synopsis "Key-value cache and store")
@@ -1154,3 +1158,53 @@ can autogenerate peewee models using @code{pwiz}, a model generator.")
(define-public python2-peewee
(package-with-python2 python-peewee))
+
+(define-public sqlcipher
+ (package
+ (name "sqlcipher")
+ (version "3.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/sqlcipher/" name
+ "/archive/v" version ".tar.gz"))
+ (sha256
+ (base32 "1gv58dlbpzrmznly52yqbxgvii0ib88zr3aszla1bsypwjr6flff"))
+ (file-name (string-append name "-" version ".tar.gz"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("libcrypto" ,openssl)
+ ("libtcl8.6" ,tcl))) ; required for running the tests
+ (native-inputs
+ `(("tcl" ,tcl)))
+ (arguments
+ '(#:configure-flags
+ '("--enable-tempstore=yes"
+ "CFLAGS=-DSQLITE_HAS_CODEC -DSQLITE_ENABLE_FTS3"
+ "LDFLAGS=-lcrypto -ltcl8.6"
+ "--disable-tcl")
+ ;; tests cannot be run from the Makefile
+ ;; see: <https://github.com/sqlcipher/sqlcipher/issues/172>
+ #:test-target "testfixture"
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'check 'build-test-runner
+ (assoc-ref %standard-phases 'check))
+ (replace 'check
+ (lambda _
+ (zero?
+ (system* "./testfixture" "test/crypto.test")))))))
+ (home-page "https://www.zetetic.net/sqlcipher/")
+ (synopsis
+ "Library providing transparent encryption of SQLite database files")
+ (description "SQLCipher is an implementation of SQLite, extended to
+provide transparent 256-bit AES encryption of database files. Pages are
+encrypted before being written to disk and are decrypted when read back. It’s
+well suited for protecting embedded application databases and for mobile
+development.")
+ ;; The source files
+ ;; src/{crypto.c,crypto_impl.c,crypto.h,crypto_cc.c,crypto_libtomcrypt.c},
+ ;; src/{crypto_openssl.c,sqlcipher.h}, tool/crypto-speedtest.tcl,
+ ;; test/crypto.test are licensed under a 3-clause BSD license. All other
+ ;; source files are in the public domain.
+ (license (list license:public-domain license:bsd-3))))
diff --git a/gnu/packages/dav.scm b/gnu/packages/dav.scm
index 507d00c1a6..be6c40f4ba 100644
--- a/gnu/packages/dav.scm
+++ b/gnu/packages/dav.scm
@@ -52,13 +52,13 @@ clients.")
(define-public vdirsyncer
(package
(name "vdirsyncer")
- (version "0.12.1")
+ (version "0.13.1")
(source (origin
(method url-fetch)
(uri (pypi-uri name version))
(sha256
(base32
- "1y3xpl83p4y1m5ks44drhwpygzwbjwhraycrhxlkhwk8bhnsifrz"))))
+ "1c4kipcc7dx1rn5j1a1x7wckz09mm9ihwakf3ramwn1y78q5zanb"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
diff --git a/gnu/packages/dejagnu.scm b/gnu/packages/dejagnu.scm
index 60fd2124f0..ba34e36c6a 100644
--- a/gnu/packages/dejagnu.scm
+++ b/gnu/packages/dejagnu.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2016 Efraim Flashner <efraim@flasher.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -26,7 +27,7 @@
(define-public dejagnu
(package
(name "dejagnu")
- (version "1.5.3")
+ (version "1.6")
(source
(origin
(method url-fetch)
@@ -34,50 +35,48 @@
version ".tar.gz"))
(sha256
(base32
- "069z3qrdv35cm2sbnfr5yjzplrqj9f61cchxis7j9mm19hv8x6q9"))))
+ "0qypaakd2065jgpcv84zcsibl8gph3p334gb2qdmhsrbirhlmdh0"))))
(build-system gnu-build-system)
(inputs `(("expect" ,expect)))
(arguments
- '(#:phases (alist-replace
- 'check
- (lambda _
- ;; Note: The test-suite *requires* /dev/pts among the
- ;; `build-chroot-dirs' of the build daemon when
- ;; building in a chroot. See
- ;; <http://thread.gmane.org/gmane.linux.distributions.nixos/1036>
- ;; for details.
- (if (and (directory-exists? "/dev/pts")
- (directory-exists? "/proc"))
- (begin
- ;; Provide `runtest' with a log name, otherwise
- ;; it tries to run `whoami', which fails when in
- ;; a chroot.
- (setenv "LOGNAME" "guix-builder")
+ '(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ ;; Note: The test-suite *requires* /dev/pts among the
+ ;; `build-chroot-dirs' of the build daemon when
+ ;; building in a chroot. See
+ ;; <http://thread.gmane.org/gmane.linux.distributions.nixos/1036>
+ ;; for details.
+ (if (and (directory-exists? "/dev/pts")
+ (directory-exists? "/proc"))
+ (begin
+ ;; Provide `runtest' with a log name, otherwise it
+ ;; tries to run `whoami', which fails when in a chroot.
+ (setenv "LOGNAME" "guix-builder")
- ;; The test-suite needs to have a non-empty stdin:
- ;; <http://lists.gnu.org/archive/html/bug-dejagnu/2003-06/msg00002.html>.
- (zero?
- (system "make check < /dev/zero")))
- (begin
- (display "test suite cannot be run, skipping\n")
- #t)))
- (alist-cons-after
- 'install 'post-install
- (lambda* (#:key inputs outputs #:allow-other-keys)
- ;; Use the right `expect' binary.
- (let ((out (assoc-ref outputs "out"))
- (expect (assoc-ref inputs "expect")))
- (substitute* (string-append out "/bin/runtest")
- (("^mypath.*$" all)
- (string-append all
- "export PATH="
- expect "/bin:$PATH\n")))))
- %standard-phases))))
+ ;; The test-suite needs to have a non-empty stdin:
+ ;; <http://lists.gnu.org/archive/html/bug-dejagnu/2003-06/msg00002.html>.
+ (zero?
+ (system "make check < /dev/zero")))
+ (begin
+ (display "test suite cannot be run, skipping\n")
+ #t))))
+ (add-after 'install 'post-install
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ ;; Use the right `expect' binary.
+ (let ((out (assoc-ref outputs "out"))
+ (expect (assoc-ref inputs "expect")))
+ (substitute* (string-append out "/bin/runtest")
+ (("^mypath.*$" all)
+ (string-append all
+ "export PATH="
+ expect "/bin:$PATH\n")))))))))
(home-page
- "http://www.gnu.org/software/dejagnu/")
+ "https://www.gnu.org/software/dejagnu/")
(synopsis "GNU software testing framework")
(description
"DejaGnu is a framework for testing software. In effect, it serves as
a front-end for all tests written for a program. Thus, each program can have
multiple test suites, which are then all managed by a single harness.")
- (license gpl2+)))
+ (license gpl3+)))
diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm
index 4a20f0c1a5..1b345dba1f 100644
--- a/gnu/packages/emacs.scm
+++ b/gnu/packages/emacs.scm
@@ -266,14 +266,14 @@ editor (without an X toolkit)" )
(define-public geiser
(package
(name "geiser")
- (version "0.8.1")
+ (version "0.9")
(source (origin
(method url-fetch)
(uri (string-append "mirror://savannah/geiser/" version
"/geiser-" version ".tar.gz"))
(sha256
(base32
- "163zh8qf1q8l485d94a51a9xixirj8r2xvrbgxyw06vkaqrz5qvc"))))
+ "1n772ysl1dmn0vy3gk230ymyjm14h93zw99y6h2rqp1ixy7v43dm"))))
(build-system gnu-build-system)
(arguments
'(#:phases (alist-cons-after
@@ -298,34 +298,8 @@ metadata.")
(license license:bsd-3)))
(define-public geiser-next
- ;; Geiser's upcoming version supports guile-next, and 0.8.1 does not.
- ;; When the next Geiser release comes out, we can remove this.
- (let ((commit "2e335695fc1a4a0b520b50deb761b958194cbec4"))
- (package
- (inherit geiser)
- (name "geiser-next")
- (version (string-append "0.8.1-1"
- (string-take commit 7)))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "git://git.sv.gnu.org/geiser.git")
- (commit commit)))
- (sha256
- (base32
- "00rmpn8zncq1fiah5m12l26z0s28bh7ql63kxdvksqdgfrisnmgf"))))
- (native-inputs
- `(("autoconf" ,autoconf)
- ("automake" ,automake)
- ("texinfo" ,texinfo)
- ,@(package-native-inputs geiser)))
- (arguments
- (substitute-keyword-arguments (package-arguments geiser)
- ((#:phases phases)
- `(modify-phases ,phases
- (add-after 'unpack 'autogen
- (lambda _
- (zero? (system* "sh" "autogen.sh")))))))))))
+ ;; This has become "geiser".
+ (deprecated-package "geiser-next" geiser))
(define-public paredit
(package
@@ -424,7 +398,7 @@ configuration files, such as .gitattributes, .gitignore, and .git/config.")
(define-public emacs-with-editor
(package
(name "emacs-with-editor")
- (version "2.5.2")
+ (version "2.5.6")
(source (origin
(method url-fetch)
(uri (string-append
@@ -433,7 +407,7 @@ configuration files, such as .gitattributes, .gitignore, and .git/config.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0k57f2wqng7510nzyzgjgbapplia23l3zrphl816nfm4s58sy1ka"))))
+ "14vypqj3wqym5yd0nggfm1xdgq5hv1kwxkg6i8ymlpxcdfxj45w7"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-dash" ,emacs-dash)))
@@ -2156,7 +2130,7 @@ dark background.")
(define-public emacs-smartparens
(package
(name "emacs-smartparens")
- (version "1.7.1")
+ (version "1.8.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2165,7 +2139,7 @@ dark background.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1b47ppkzsj8j8a2p0bmvq05rhm2d2lsm3wlc0sg542r4zr6nji8s"))))
+ "0xsqiklg0q4w6gj0js1hvsz4lkypvcx6c9kzb1mz232gwlqx1azw"))))
(build-system emacs-build-system)
(propagated-inputs `(("emacs-dash" ,emacs-dash)))
(home-page "https://github.com/Fuco1/smartparens")
@@ -2185,15 +2159,16 @@ well as completely new features.")
(define-public emacs-hl-todo
(package
(name "emacs-hl-todo")
- (version "1.7.0")
+ (version "1.7.1")
(source (origin
(method url-fetch)
(uri (string-append
"https://raw.githubusercontent.com/tarsius/hl-todo/"
version "/hl-todo.el"))
+ (file-name (string-append "hl-todo-" version ".el"))
(sha256
(base32
- "18zydm43zajlglhgr0bhdkd4pln27amd063k2ql6p1mvyam3j8ia"))))
+ "0flhz9vy8w1vvwwji92pi5k4659hl368bakj2qf2zfd26z8x583h"))))
(build-system emacs-build-system)
(home-page "https://github.com/tarsius/hl-todo")
(synopsis "Emacs mode to highlight TODO and similar keywords")
@@ -2258,7 +2233,7 @@ fully-functional one.")
(define-public emacs-hydra
(package
(name "emacs-hydra")
- (version "0.13.0")
+ (version "0.13.6")
(source
(origin
(method url-fetch)
@@ -2267,7 +2242,7 @@ fully-functional one.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "19ynkjlg3jj7x90xxbz885324h6nkxmzlb2c2c95xkr20zckn0lk"))))
+ "0575vh858gm35p57s49dy6pc2ij46dmj9zaa4z0cp98sqra3j3l0"))))
(build-system emacs-build-system)
(home-page "https://github.com/abo-abo/hydra")
(synopsis "Make Emacs bindings that stick around")
diff --git a/gnu/packages/embedded.scm b/gnu/packages/embedded.scm
new file mode 100644
index 0000000000..24eeef9fa7
--- /dev/null
+++ b/gnu/packages/embedded.scm
@@ -0,0 +1,165 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages embedded)
+ #:use-module (guix utils)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix svn-download)
+ #:use-module (guix git-download)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix build-system gnu)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages cross-base)
+ #:use-module (gnu packages flex)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages texinfo))
+
+;; We must not use the released GCC sources here, because the cross-compiler
+;; does not produce working binaries. Instead we take the very same SVN
+;; revision from the branch that is used for a release of the "GCC ARM
+;; embedded" project on launchpad.
+;; See https://launchpadlibrarian.net/218827644/release.txt
+(define-public gcc-arm-none-eabi-4.9
+ (let ((xgcc (cross-gcc "arm-none-eabi"
+ (cross-binutils "arm-none-eabi")))
+ (revision "1")
+ (svn-revision 227977))
+ (package (inherit xgcc)
+ (version (string-append (package-version xgcc) "-"
+ revision "." (number->string svn-revision)))
+ (source
+ (origin
+ (method svn-fetch)
+ (uri (svn-reference
+ (url "svn://gcc.gnu.org/svn/gcc/branches/ARM/embedded-4_9-branch/")
+ (revision svn-revision)))
+ (file-name (string-append "gcc-arm-embedded-" version "-checkout"))
+ (sha256
+ (base32
+ "113r98kygy8rrjfv2pd3z6zlfzbj543pq7xyq8bgh72c608mmsbr"))
+ (patches (origin-patches (package-source xgcc)))))
+ (native-inputs
+ `(("flex" ,flex)
+ ,@(package-native-inputs xgcc)))
+ (arguments
+ (substitute-keyword-arguments (package-arguments xgcc)
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (add-after 'unpack 'fix-genmultilib
+ (lambda _
+ (substitute* "gcc/genmultilib"
+ (("#!/bin/sh") (string-append "#!" (which "sh"))))
+ #t))))
+ ((#:configure-flags flags)
+ ;; The configure flags are largely identical to the flags used by the
+ ;; "GCC ARM embedded" project.
+ `(append (list "--enable-multilib"
+ "--with-newlib"
+ "--with-multilib-list=armv6-m,armv7-m,armv7e-m"
+ "--with-host-libstdcxx=-static-libgcc -Wl,-Bstatic,-lstdc++,-Bdynamic -lm"
+ "--enable-plugins"
+ "--disable-decimal-float"
+ "--disable-libffi"
+ "--disable-libgomp"
+ "--disable-libmudflap"
+ "--disable-libquadmath"
+ "--disable-libssp"
+ "--disable-libstdcxx-pch"
+ "--disable-nls"
+ "--disable-shared"
+ "--disable-threads"
+ "--disable-tls")
+ (delete "--disable-multilib" ,flags)))))
+ (native-search-paths
+ (list (search-path-specification
+ (variable "CROSS_C_INCLUDE_PATH")
+ (files '("arm-none-eabi/include")))
+ (search-path-specification
+ (variable "CROSS_CPLUS_INCLUDE_PATH")
+ (files '("arm-none-eabi/include")))
+ (search-path-specification
+ (variable "CROSS_LIBRARY_PATH")
+ (files '("arm-none-eabi/lib"))))))))
+
+(define-public newlib-arm-none-eabi
+ (package
+ (name "newlib")
+ (version "2.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "ftp://sourceware.org/pub/newlib/newlib-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "01i7qllwicf05vsvh39qj7qp5fdifpvvky0x95hjq39mbqiksnsl"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:out-of-source? #t
+ ;; The configure flags are identical to the flags used by the "GCC ARM
+ ;; embedded" project.
+ #:configure-flags '("--target=arm-none-eabi"
+ "--enable-newlib-io-long-long"
+ "--enable-newlib-register-fini"
+ "--disable-newlib-supplied-syscalls"
+ "--disable-nls")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-references-to-/bin/sh
+ (lambda _
+ (substitute* '("libgloss/arm/cpu-init/Makefile.in"
+ "libgloss/arm/Makefile.in"
+ "libgloss/libnosys/Makefile.in"
+ "libgloss/Makefile.in")
+ (("/bin/sh") (which "sh")))
+ #t)))))
+ (native-inputs
+ `(("xbinutils" ,(cross-binutils "arm-none-eabi"))
+ ("xgcc" ,gcc-arm-none-eabi-4.9)
+ ("texinfo" ,texinfo)))
+ (home-page "http://www.sourceware.org/newlib/")
+ (synopsis "C library for use on embedded systems")
+ (description "Newlib is a C library intended for use on embedded
+systems. It is a conglomeration of several library parts that are easily
+usable on embedded products.")
+ (license (license:non-copyleft
+ "https://www.sourceware.org/newlib/COPYING.NEWLIB"))))
+
+(define-public newlib-nano-arm-none-eabi
+ (package (inherit newlib-arm-none-eabi)
+ (name "newlib-nano")
+ (arguments
+ (substitute-keyword-arguments (package-arguments newlib-arm-none-eabi)
+ ;; The configure flags are identical to the flags used by the "GCC ARM
+ ;; embedded" project. They optimize newlib for use on small embedded
+ ;; systems with limited memory.
+ ((#:configure-flags flags)
+ ''("--target=arm-none-eabi"
+ "--enable-multilib"
+ "--disable-newlib-supplied-syscalls"
+ "--enable-newlib-reent-small"
+ "--disable-newlib-fvwrite-in-streamio"
+ "--disable-newlib-fseek-optimization"
+ "--disable-newlib-wide-orient"
+ "--enable-newlib-nano-malloc"
+ "--disable-newlib-unbuf-stream-opt"
+ "--enable-lite-exit"
+ "--enable-newlib-global-atexit"
+ "--enable-newlib-nano-formatted-io"
+ "--disable-nls"))))
+ (synopsis "Newlib variant for small systems with limited memory")))
diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm
index e28598d421..22857e84b5 100644
--- a/gnu/packages/fonts.scm
+++ b/gnu/packages/fonts.scm
@@ -704,18 +704,11 @@ symbols unable to be displayed properly.")
(package
(name "font-un")
(version "1.0.2-080608")
- ;; The upstream server at kldp.net is serving us broken MIME.
- ;; See <http://bugs.gnu.org/22908>.
(source (origin
(method url-fetch)
- (uri (list
- (string-append
- "http://krosos.sdf.org/static/unix/"
- "un-fonts-core-" version ".tar.gz")
- ;; XXX: The upstream server at kldp.net
- (string-append
- "https://kldp.net/projects/unfonts/download/4695?filename="
- "un-fonts-core-" version ".tar.gz")))
+ (uri (string-append
+ "https://kldp.net/unfonts/release/2607-"
+ "un-fonts-core-" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
@@ -838,22 +831,15 @@ glyph designs, not just an added slant.")
"unzip")
"/bin"))
(font-dir (string-append %output
- "/share/fonts/truetype"))
- (doc-dir (string-append %output "/share/doc/"
- ,name "-" ,version)))
+ "/share/fonts/truetype")))
(setenv "PATH" PATH)
(system* "unzip" (assoc-ref %build-inputs "source"))
(mkdir-p font-dir)
- (mkdir-p doc-dir)
(for-each (lambda (ttf)
(copy-file ttf
(string-append font-dir "/" ttf)))
- (find-files "." "\\.ttf$"))
- (for-each (lambda (doc)
- (copy-file doc
- (string-append doc-dir "/" doc)))
- (find-files "." "\\.txt$"))))))
+ (find-files "." "\\.ttf$"))))))
(native-inputs
`(("source" ,source)
("unzip" ,unzip)))
diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm
index 5054df8fca..60cff2e330 100644
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@ -465,7 +465,7 @@ smooth contours with constant curvature at the spline joins.")
(define-public libuninameslist
(package
(name "libuninameslist")
- (version "0.5.20150701")
+ (version "20160701")
(source
(origin
(method url-fetch)
@@ -474,17 +474,16 @@ smooth contours with constant curvature at the spline joins.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1j6147l100rppw7axlrkdx0p35fax6bz2zh1xgpg7a3b4pmqaj3v"))))
+ "12xxb301a66dh282pywpy00wxiaq5z8z20qm3pr2vql04r2g8d0x"))))
(build-system gnu-build-system)
(native-inputs `(("autoconf" ,autoconf)
("automake" ,automake)
("libtool" ,libtool)))
(arguments
- `(#:phases (alist-cons-after
- 'unpack 'bootstrap
- (lambda _
- (zero? (system* "autoreconf" "-vi")))
- %standard-phases)))
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'bootstrap
+ (lambda _ (zero? (system* "autoreconf" "-vi")))))))
(synopsis "Unicode names and annotation list")
(description
"LibUniNamesList holds www.unicode.org Nameslist.txt data which can be
diff --git a/gnu/packages/fpga.scm b/gnu/packages/fpga.scm
new file mode 100644
index 0000000000..bb199096dc
--- /dev/null
+++ b/gnu/packages/fpga.scm
@@ -0,0 +1,311 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages fpga)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system gnu)
+ #:use-module (guix build-system cmake)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages tcl)
+ #:use-module (gnu packages readline)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages bison)
+ #:use-module (gnu packages flex)
+ #:use-module (gnu packages gtk)
+ #:use-module (gnu packages libffi)
+ #:use-module (gnu packages zip)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages ghostscript)
+ #:use-module (gnu packages gperf)
+ #:use-module (gnu packages gawk)
+ #:use-module (gnu packages version-control)
+ #:use-module (gnu packages libftdi))
+
+(define-public abc
+ (let ((commit "5ae4b975c49c")
+ (revision "1"))
+ (package
+ (name "abc")
+ (version (string-append "0.0-" revision "-" (string-take commit 9)))
+ (source (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://bitbucket.org/alanmi/abc/get/" commit ".zip"))
+ (file-name (string-append name "-" version "-checkout.zip"))
+ (sha256
+ (base32
+ "1syygi1x40rdryih3galr4q8yg1w5bvdzl75hd27v1xq0l5bz3d0"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("unzip" ,unzip)))
+ (inputs
+ `(("readline" ,readline)))
+ (arguments
+ `(#:tests? #f ; no check target
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (out-bin (string-append out "/bin")))
+ (install-file "abc" out-bin)))))))
+ (home-page "http://people.eecs.berkeley.edu/~alanmi/abc/")
+ (synopsis "Sequential logic synthesis and formal verification")
+ (description "ABC is a program for sequential logic synthesis and
+formal verification.")
+ (license
+ (license:non-copyleft "https://fedoraproject.org/wiki/Licensing:MIT#Modern_Variants")))))
+
+(define-public iverilog
+ (package
+ (name "iverilog")
+ (version "10.1.1")
+ (source (origin
+ (method url-fetch)
+ (uri
+ (string-append "ftp://ftp.icarus.com/pub/eda/verilog/v10/"
+ "verilog-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1nnassxvq30rnn0r2p85rkb2zwxk97p109y13x3vr365wzgpbapx"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("flex" ,flex)
+ ("bison" ,bison)
+ ("ghostscript" ,ghostscript))) ; ps2pdf
+ (home-page "http://iverilog.icarus.com/")
+ (synopsis "FPGA Verilog simulation and synthesis tool")
+ (description "Icarus Verilog is a Verilog simulation and synthesis tool.
+It operates as a compiler, compiling source code written in Verilog
+(IEEE-1364) into some target format.
+For batch simulation, the compiler can generate an intermediate form
+called vvp assembly.
+This intermediate form is executed by the ``vvp'' command.
+For synthesis, the compiler generates netlists in the desired format.")
+ ;; GPL2 only because of:
+ ;; - ./driver/iverilog.man.in
+ ;; - ./iverilog-vpi.man.in
+ ;; - ./tgt-fpga/iverilog-fpga.man
+ ;; - ./vvp/vvp.man.in
+ ;; Otherwise would be GPL2+.
+ ;; You have to accept both GPL2 and LGPL2.1+.
+ (license (list license:gpl2 license:lgpl2.1+))))
+
+(define-public yosys
+ (package
+ (name "yosys")
+ (version "0.6")
+ (source (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://github.com/cliffordwolf/yosys/archive/"
+ name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "02j0c0m9dfyjccynalf0aggj6gy20k7iphpkg5cn6sdirlkv8gmx"))
+ (file-name (string-append name "-" version "-checkout.tar.gz"))
+ (modules '((guix build utils)))
+ (snippet
+ '(substitute* "Makefile"
+ (("ABCREV = .*") "ABCREV = default\n")))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:test-target "test"
+ #:make-flags (list "CC=gcc"
+ "CXX=g++"
+ (string-append "PREFIX=" %output))
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'configure
+ (lambda* (#:key inputs (make-flags '()) #:allow-other-keys)
+ (zero? (apply system* "make" "config-gcc" make-flags))))
+ (add-after 'configure 'prepare-abc
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let* ((sourceabc (assoc-ref inputs "abc"))
+ (sourcebin (string-append sourceabc "/bin"))
+ (source (string-append sourcebin "/abc")))
+ (mkdir-p "abc")
+ (call-with-output-file "abc/Makefile"
+ (lambda (port)
+ (format port ".PHONY: all\nall:\n\tcp -f abc abc-default\n")))
+ (copy-file source "abc/abc")
+ (zero? (system* "chmod" "+w" "abc/abc")))))
+ (add-before 'check 'fix-iverilog-references
+ (lambda* (#:key inputs native-inputs #:allow-other-keys)
+ (let* ((xinputs (or native-inputs inputs))
+ (xdirname (assoc-ref xinputs "iverilog"))
+ (iverilog (string-append xdirname "/bin/iverilog")))
+ (substitute* '("./manual/CHAPTER_StateOfTheArt/synth.sh"
+ "./manual/CHAPTER_StateOfTheArt/validate_tb.sh"
+ "./techlibs/ice40/tests/test_bram.sh"
+ "./techlibs/ice40/tests/test_ffs.sh"
+ "./techlibs/xilinx/tests/bram1.sh"
+ "./techlibs/xilinx/tests/bram2.sh"
+ "./tests/bram/run-single.sh"
+ "./tests/realmath/run-test.sh"
+ "./tests/simple/run-test.sh"
+ "./tests/techmap/mem_simple_4x1_runtest.sh"
+ "./tests/tools/autotest.sh"
+ "./tests/vloghtb/common.sh")
+ (("if ! which iverilog") "if ! true")
+ (("iverilog ") (string-append iverilog " "))
+ (("iverilog_bin=\".*\"") (string-append "iverilog_bin=\""
+ iverilog "\"")))
+ #t))))))
+ ;; TODO add xdot [patch the path to it here] as soon as I find out where it is.
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("python" ,python)
+ ("bison" ,bison)
+ ("flex" ,flex)
+ ("gawk" , gawk) ; for the tests and "make" progress pretty-printing
+ ("tcl" ,tcl) ; tclsh for the tests
+ ("iverilog" ,iverilog))) ; for the tests
+ (inputs
+ `(("tcl" ,tcl)
+ ("readline" ,readline)
+ ("libffi" ,libffi)
+ ("abc" ,abc)))
+ (home-page "http://www.clifford.at/yosys/")
+ (synopsis "FPGA Verilog RTL synthesizer")
+ (description "Yosys synthesizes Verilog-2005.")
+ (license license:isc)))
+
+(define-public icestorm
+ (let ((commit "12b2295c9087d94b75e374bb205ae4d76cf17e2f")
+ (revision "1"))
+ (package
+ (name "icestorm")
+ (version (string-append "0.0-" revision "-" (string-take commit 9)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/cliffordwolf/icestorm.git")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "1mmzlqvap6w8n4qzv3idvy51arkgn03692ssplwncy3akjrbsd2b"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:tests? #f ; no unit tests that don't need an FPGA exist.
+ #:make-flags (list "CC=gcc" "CXX=g++"
+ (string-append "PREFIX=" (assoc-ref %outputs "out")))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'remove-usr-local
+ (lambda _
+ (substitute* "iceprog/Makefile"
+ (("-I/usr/local/include") "")
+ (("-L/usr/local/lib") ""))
+ #t))
+ (delete 'configure))))
+ (inputs
+ `(("libftdi" ,libftdi)))
+ (native-inputs
+ `(("python-3" ,python)
+ ("pkg-config" ,pkg-config)))
+ (home-page "http://www.clifford.at/icestorm/")
+ (synopsis "Project IceStorm - Lattice iCE40 FPGAs bitstream tools")
+ (description "Project IceStorm - Lattice iCE40 FPGAs Bitstream Tools.
+Includes the actual FTDI connector.")
+ (license license:isc))))
+
+(define-public arachne-pnr
+ (let ((commit "52e69ed207342710080d85c7c639480e74a021d7")
+ (revision "1"))
+ (package
+ (name "arachne-pnr")
+ (version (string-append "0.0-" revision "-" (string-take commit 9)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/cseed/arachne-pnr.git")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "15bdw5yxj76lxrwksp6liwmr6l1x77isf4bs50ys9rsnmiwh8c3w"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:test-target "test"
+ #:phases (modify-phases %standard-phases
+ (replace 'configure
+ (lambda* (#:key outputs inputs #:allow-other-keys)
+ (substitute* '("Makefile")
+ (("DESTDIR = .*") (string-append "DESTDIR = "
+ (assoc-ref outputs "out")
+ "\n"))
+ (("ICEBOX = .*") (string-append "ICEBOX = "
+ (assoc-ref inputs "icestorm")
+ "/share/icebox\n")))
+ (substitute* '("./tests/fsm/generate.py"
+ "./tests/combinatorial/generate.py")
+ (("#!/usr/bin/python") "#!/usr/bin/python2"))
+ #t)))))
+ (inputs
+ `(("icestorm" ,icestorm)))
+ (native-inputs
+ `(("git" ,git) ; for determining its own version string
+ ("yosys" ,yosys) ; for tests
+ ("perl" ,perl) ; for shasum
+ ("python-2" ,python-2))) ; for tests
+ (home-page "https://github.com/cseed/arachne-pnr")
+ (synopsis "Place-and-Route tool for FPGAs")
+ (description "Arachne-PNR is a Place-and-Route Tool For FPGAs.")
+ (license license:gpl2))))
+
+(define-public gtkwave
+ (package
+ (name "gtkwave")
+ (version "3.3.76")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "http://gtkwave.sourceforge.net/"
+ name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1vlvavszb1jwwiixiagld88agjrjg0ix8qa4xnxj4ziw0q87jbmn"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("gperf" ,gperf)
+ ("pkg-config" ,pkg-config)))
+ (inputs
+ `(("tcl" ,tcl)
+ ("tk" ,tk)
+ ("gtk+-2" ,gtk+-2)))
+ (arguments
+ `(#:configure-flags
+ (list (string-append "--with-tcl="
+ (assoc-ref %build-inputs "tcl")
+ "/lib")
+ (string-append "--with-tk="
+ (assoc-ref %build-inputs "tk")
+ "/lib"))))
+
+ (synopsis "Waveform viewer for FPGA simulator trace files")
+ (description "This package is a waveform viewer for FPGA
+simulator trace files (FST).")
+ (home-page "http://gtkwave.sourceforge.net/")
+ ;; Exception against free government use in tcl_np.c and tcl_np.h
+ (license (list license:gpl2+ license:expat license:tcl/tk))))
diff --git a/gnu/packages/freeipmi.scm b/gnu/packages/freeipmi.scm
index 01f1389144..cd97d52f99 100644
--- a/gnu/packages/freeipmi.scm
+++ b/gnu/packages/freeipmi.scm
@@ -28,19 +28,19 @@
(define-public freeipmi
(package
(name "freeipmi")
- (version "1.5.3")
+ (version "1.5.4")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/freeipmi/freeipmi-"
version ".tar.gz"))
(sha256
(base32
- "0s4q7imc4r3g9lkd92bnvw70679q83b0irrlw895i5nc05dj4djx"))))
+ "1m8zvnyjyjap07vvc5z90nyghabbb6bjcyyc7qswj66qsmssf135"))))
(build-system gnu-build-system)
(inputs
`(("readline" ,readline)
("libgcrypt" ,libgcrypt)))
- (home-page "http://www.gnu.org/software/freeipmi/")
+ (home-page "https://www.gnu.org/software/freeipmi/")
(synopsis "Platform management, including sensor and power monitoring")
(description
"GNU FreeIPMI is a collection of in-band and out-of-band IPMI software
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index 8c8a35b121..72aff907ae 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -179,8 +179,10 @@ scriptable with Guile.")
(source
(origin
(method url-fetch)
- (uri (string-append "http://abbaye-for-linux.googlecode.com/files/"
- "abbaye-for-linux-src-" version ".tar.gz"))
+ (uri (string-append "https://storage.googleapis.com/"
+ "google-code-archive-downloads/v2/code.google.com/"
+ "abbaye-for-linux/abbaye-for-linux-src-"
+ version ".tar.gz"))
(sha256
(base32
"1wgvckgqa2084rbskxif58wbb83xbas8s1i8s7d57xbj08ryq8rk"))))
@@ -427,7 +429,7 @@ exec ~a/bin/freedink -refdir ~a/share/dink\n"
(define-public xboard
(package
(name "xboard")
- (version "4.9.0")
+ (version "4.9.1")
(source
(origin
(method url-fetch)
@@ -435,14 +437,15 @@ exec ~a/bin/freedink -refdir ~a/share/dink\n"
".tar.gz"))
(sha256
(base32
- "1av6r3s5vyclwf3c9i1pkr2442ryrf4ixhhf2i44a4j1xyhlp5jb"))))
+ "1mkh36xnnacnz9r00b5f9ld9309k32jv6mcavklbdnca8bl56bib"))))
(build-system gnu-build-system)
(inputs
`(("gtk+" ,gtk+-2)
("librsvg" ,librsvg)))
- (native-inputs `(("texinfo" ,texinfo)
- ("pkg-config" ,pkg-config)))
- (home-page "http://www.gnu.org/software/xboard")
+ (native-inputs
+ `(("texinfo" ,texinfo)
+ ("pkg-config" ,pkg-config)))
+ (home-page "https://www.gnu.org/software/xboard")
(synopsis "Graphical user interface for chess programs")
(description "GNU XBoard is a graphical board for all varieties of chess,
including international chess, xiangqi (Chinese chess), shogi (Japanese chess)
@@ -2784,12 +2787,11 @@ auto mapper with a VT100 map display.")
(source
(origin (method url-fetch)
(uri (string-append
- "https://github.com/sgimenez/laby/tarball/"
- name "-" version))
- (file-name (string-append name "-" version ".tar.gz"))
+ "https://github.com/sgimenez/laby/archive/"
+ name "-" version ".tar.gz"))
(sha256
(base32
- "113ip48308ps3lsw427xswgx3wdanils43nyal9n4jr6bcx1bj2j"))
+ "0gyrfa95l1qka7gbjf7l6mk7mbfvph00l0c995ia272qdw7rjhyf"))
(patches (search-patches "laby-make-install.patch"))))
(build-system gnu-build-system)
(inputs
diff --git a/gnu/packages/gcc.scm b/gnu/packages/gcc.scm
index b26e93e886..bed277b1e0 100644
--- a/gnu/packages/gcc.scm
+++ b/gnu/packages/gcc.scm
@@ -566,6 +566,13 @@ as the 'native-search-paths' field."
(("libgcj(_bc)?_la_LDFLAGS =" ldflags _)
(string-append ldflags " -Wl,-rpath=$(libdir)")))))
(add-after
+ 'unpack 'patch-testsuite
+ ;; dejagnu-1.6 removes the 'absolute' command
+ (lambda _
+ (substitute* "libjava/testsuite/lib/libjava.exp"
+ (("absolute") "file normalize"))
+ #t))
+ (add-after
'install 'install-javac-and-javap-wrappers
(lambda _
(let* ((javac (assoc-ref %build-inputs "javac.in"))
diff --git a/gnu/packages/gdb.scm b/gnu/packages/gdb.scm
index 80d53935e2..c6cc623f6c 100644
--- a/gnu/packages/gdb.scm
+++ b/gnu/packages/gdb.scm
@@ -37,14 +37,14 @@
(define-public gdb
(package
(name "gdb")
- (version "7.11.1")
+ (version "7.12")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/gdb/gdb-"
version ".tar.xz"))
(sha256
(base32
- "0w7wi1llznlqdqk2lmzygz2xylb2c9mh580s9i0rypkmwfj6s8g9"))))
+ "152g2qa8337cxif3lkvabjcxfd9jphfb2mza8f1p2c4bjk2z6kw3"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; FIXME "make check" fails on single-processor systems.
@@ -95,7 +95,7 @@
(native-inputs
`(("texinfo" ,texinfo)
("pkg-config" ,pkg-config)))
- (home-page "http://www.gnu.org/software/gdb/")
+ (home-page "https://www.gnu.org/software/gdb/")
(synopsis "The GNU debugger")
(description
"GDB is the GNU debugger. With it, you can monitor what a program is
diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 7d66ac97b8..b62a5f7f4d 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -5094,6 +5094,7 @@ software that do not provide their own configuration interface.")
("gvfs" ,gvfs)
("hicolor-icon-theme" ,hicolor-icon-theme)
("nautilus" ,nautilus)
+ ("pinentry-gnome3" ,pinentry-gnome3)
("pulseaudio" ,pulseaudio)
("shared-mime-info" ,shared-mime-info)
("totem" ,totem)
diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm
index c15a4afcd6..4972b37090 100644
--- a/gnu/packages/gnupg.scm
+++ b/gnu/packages/gnupg.scm
@@ -7,7 +7,8 @@
;;; Copyright © 2015, 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
-;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
+;;; Copyright © 2016 Nils Gillmann <ng0@libertad.pw>
+;;; Copyright © 2016 Christopher Baines <mail@cbaines.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -606,7 +607,7 @@ including tools for signing keys, keyring analysis, and party preparation.
(synopsis "GnuPG's interface to passphrase input")
(description
"Pinentry provides a console that allows users to enter a passphrase when
-@code{gpg} or @code{gpg2} is run and needs it.")
+@code{gpg} is run and needs it.")
(license license:gpl2+)))
(define-public pinentry-gtk2
@@ -619,7 +620,23 @@ including tools for signing keys, keyring analysis, and party preparation.
,@(package-inputs pinentry-tty)))
(description
"Pinentry provides a console and a GTK+ GUI that allows users to enter a
-passphrase when @code{gpg} or @code{gpg2} is run and needs it.")))
+passphrase when @code{gpg} is run and needs it.")))
+
+(define-public pinentry-gnome3
+ (package
+ (inherit pinentry-tty)
+ (name "pinentry-gnome3")
+ (inputs
+ `(("gtk+" ,gtk+-2)
+ ("gcr" ,gcr)
+ ("glib" ,glib)
+ ,@(package-inputs pinentry-tty)))
+ (arguments
+ `(#:configure-flags '("--enable-pinentry-gnome3")))
+ (description
+ "Pinentry provides a console and a GUI designed for use with GNOME@tie{}3
+that allows users to enter a passphrase when required by @code{gpg} or other
+software.")))
(define-public pinentry-qt
(package
@@ -632,7 +649,7 @@ passphrase when @code{gpg} or @code{gpg2} is run and needs it.")))
`(#:configure-flags '("CXXFLAGS=-std=gnu++11")))
(description
"Pinentry provides a console and a Qt GUI that allows users to enter a
-passphrase when @code{gpg} or @code{gpg2} is run and needs it.")))
+passphrase when @code{gpg} is run and needs it.")))
(define-public pinentry
(package (inherit pinentry-gtk2)
diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm
index d114dc0ad5..4927a516e2 100644
--- a/gnu/packages/gnuzilla.scm
+++ b/gnu/packages/gnuzilla.scm
@@ -28,6 +28,7 @@
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix build-system gnu)
+ #:use-module (gnu packages base)
#:use-module (gnu packages databases)
#:use-module (gnu packages glib)
#:use-module (gnu packages gstreamer)
@@ -185,7 +186,7 @@ in the Mozilla clients.")
(define-public nss
(package
(name "nss")
- (version "3.26")
+ (version "3.27.1")
(source (origin
(method url-fetch)
(uri (let ((version-with-underscores
@@ -196,7 +197,7 @@ in the Mozilla clients.")
"nss-" version ".tar.gz")))
(sha256
(base32
- "0r65s5q8kk0vr48s0zr8xi610k7h072lgkkpp4z6jlxr19bkly4i"))
+ "0sraxk26swlgl7rl742rkfp5k251v5z3lqw9k8ikin0cjfhkfdpx"))
;; Create nss.pc and nss-config.
(patches (search-patches "nss-pkgconfig.patch"))))
(build-system gnu-build-system)
@@ -290,38 +291,71 @@ PKCS #11, PKCS #12, S/MIME, X.509 v3 certificates, and other security
standards.")
(license license:mpl2.0)))
+(define (mozilla-patch file-name changeset hash)
+ "Return an origin for CHANGESET from the mozilla-esr45 repository."
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hg.mozilla.org/releases/mozilla-esr45/raw-rev/"
+ changeset))
+ (sha256 (base32 hash))
+ (file-name file-name)))
+
(define-public icecat
(package
(name "icecat")
- (version "38.8.0-gnu2")
+ (version "45.3.0-gnu1-beta")
(source
(origin
(method url-fetch)
- (uri (string-append "mirror://gnu/gnuzilla/"
- version "/"
- name "-" version ".tar.bz2"))
+ (uri (list (string-append "mirror://gnu/gnuzilla/" version "/"
+ name "-" version ".tar.bz2")
+ ;; XXX Temporary URI for 45.3 beta release.
+ ;; Remove when no longer needed.
+ (string-append "http://jenkins.trisquel.info/icecat/binaries/"
+ "icecat-45.3.0-gnu1.tar.bz2")))
(sha256
(base32
- "1yb7a1zsqpra9cgq8hrzrbm5v31drb9367cwvwiksz0ngqy342hb"))
- (patches (search-patches
- "icecat-avoid-bundled-includes.patch"
- "icecat-CVE-2016-2818-pt1.patch"
- "icecat-CVE-2016-2818-pt2.patch"
- "icecat-CVE-2016-2818-pt3.patch"
- "icecat-CVE-2016-2818-pt4.patch"
- "icecat-CVE-2016-2818-pt5.patch"
- "icecat-CVE-2016-2818-pt6.patch"
- "icecat-CVE-2016-2818-pt7.patch"
- "icecat-CVE-2016-2818-pt8.patch"
- "icecat-CVE-2016-2818-pt9.patch"
- "icecat-CVE-2016-2819.patch"
- "icecat-CVE-2016-2821.patch"
- "icecat-CVE-2016-2824.patch"
- "icecat-CVE-2016-2828.patch"
- "icecat-CVE-2016-2831.patch"))
+ "1hk5lwaqm8nkfm43sq521mzyrx0x3iiwvlcy62m7cq7grz9wixp6"))
+ (patches
+ `(,(search-patch "icecat-avoid-bundled-libraries.patch")
+ ,(mozilla-patch "icecat-CVE-2016-5250.patch" "6711ccb0184e" "1p0s91rw1j7ib6hy9gh5p0l33rja32rfgygh29jw4wq1hxfql8rk")
+ ,(mozilla-patch "icecat-CVE-2016-5257-pt1.patch" "b08f28db372e" "0fmifimavawbff700rzjibsnr16am6902gp965scvi1iy78754ia")
+ ,(mozilla-patch "icecat-CVE-2016-5257-pt2.patch" "a49fd7eb57ba" "1dyh0pjdmf64sjbj1x0mdjwfispacx9yny1kx9nzpf85myryr640")
+ ,(mozilla-patch "icecat-CVE-2016-5257-pt3.patch" "9707c3423a1e" "12nn8av0akza4ml1is9mfy8f7368mrkxsl32ly97r4irzh0iryh1")
+ ,(mozilla-patch "icecat-CVE-2016-5257-pt4.patch" "9d632865560a" "1msp1wqv0c317wqkm82hd9ajbg4a5mcr8pld5j8cx37ccv7f21g3")
+ ,(mozilla-patch "icecat-CVE-2016-5257-pt5.patch" "90697781ec9f" "1h6gcrw5ykf7r59phxqkhpfs7jsgzqn509qm43sj7mbpcvqvk5mg")
+ ,(mozilla-patch "icecat-CVE-2016-5257-pt6.patch" "dd9eb81853b9" "1lyqnn40sayziych8gqd5aj7il3zajf318y8ddj8dzz3c8id5dzc")
+ ,(mozilla-patch "icecat-CVE-2016-5257-pt7.patch" "d91fc76079e0" "022lhixa8dxa6ny9a4bh2di282i0lhyq0glqr9n4q3r8msfmf0ba")
+ ,(mozilla-patch "icecat-CVE-2016-5257-pt8.patch" "3e37ba5e0867" "1w8lncxaayq4xndhyp1hwlv00zggbayljq6rlypb8kdwgzfpi77w")
+ ,(mozilla-patch "icecat-CVE-2016-5257-pt9.patch" "3c4958a98908" "16bc6ai5qddnpm3yw24lry5s7i05xs0ycixzxiir4wmcgwcaayiy")
+ ,(mozilla-patch "icecat-CVE-2016-5261.patch" "bc2f5467b33d" "0i4b8ydmqg4blx541f56g9qrlm7gp6ih4cs7ixbds724cwk83b9f")
+ ,(mozilla-patch "icecat-CVE-2016-5270.patch" "7cd50d56bb61" "15nbp5axr59mczxgf37nli37jbw0jdknmxz7z71772pzjd2z07r9")
+ ,(mozilla-patch "icecat-CVE-2016-5272.patch" "6e43a01fee3c" "025xp1wdnz1gc5l2rsgbrwsh1pbysjiyfgz0g6rvr390r7ag1n74")
+ ,(mozilla-patch "icecat-CVE-2016-5274.patch" "10c9453407de" "1wqh6hj0dpa7r3hhlyrflcv3r3cg0xq4rb0zvhysi6l7lwb8q51r")
+ ,(mozilla-patch "icecat-CVE-2016-5276.patch" "fc818ab03f15" "1q64ipl172dcmyy9p8p3l3ljpdh1q1jg48lai0qn2xgknl7sdpks")
+ ,(mozilla-patch "icecat-CVE-2016-5277.patch" "7b668c5cec92" "1qmchn6qifgjakzac6i4hgnivy062pzgz9p1l11c1m3an1rh0isg")
+ ,(mozilla-patch "icecat-CVE-2016-5278.patch" "fd5052e343df" "1nzmzlnsz61w9aw4mjvgmlkz88aqv1w858rr0mbv07hwyrljfi84")
+ ,(mozilla-patch "icecat-CVE-2016-5280.patch" "30673bc9730b" "1qz1684v1rp86ngadcaqd68iqf472flnrnk971ryg4fbsyy8g1za")
+ ,(mozilla-patch "icecat-CVE-2016-5281-pt1.patch" "61405f1fd1df" "1fgmq67arwsl1nrl133fcb5cz6jbbcfjvbv8cd8cadhapin971a7")
+ ,(mozilla-patch "icecat-CVE-2016-5281-pt2.patch" "7776b6ec7b92" "1f7k8f4lk7nyghwajsxf6nb7yvzsaw3jwpa3316znsva12m548mn")
+ ,(mozilla-patch "icecat-CVE-2016-5284-pt1.patch" "55e768767416" "1gg7m12njbkn1jqf2gp2y7zd9ik3xhqkjb7znczna4l438h7ki83")
+ ,(mozilla-patch "icecat-CVE-2016-5284-pt2.patch" "3c42249975a5" "0gnanndkmhsp49rldv4kh0smkdcs7616v46hn567kfw8yfwqvnli")
+ ,(mozilla-patch "icecat-CVE-2016-5284-pt3.patch" "126e5d574811" "13gr08bzqy23adz0ciihb7cy9wdnkcn71i77a3y5b5apm6k54mwi")
+ ,(mozilla-patch "icecat-CVE-2016-5284-pt4.patch" "7b8bd7aae1a8" "0mq5gpq6ni8czfcs1rif4is0igh0054aw41ga0jqkq58g7lavkrf")
+ ,(mozilla-patch "icecat-CVE-2016-5284-pt5.patch" "0799490f4e6f" "1ypv6i48nabbhcqbach8fbgz9bmnhm7q5z9dnfid44z8g54l3f33")
+ ,(mozilla-patch "icecat-CVE-2016-5284-pt6.patch" "fc990e4ae8bc" "1s2cj505ajwwiy4xvn5zlmyzqpgahxmqqvis0a6xm6mjbjh02gm4")
+ ,(mozilla-patch "icecat-bug-1251088.patch" "5ffa912ed83e" "0v5lpv3c89c2d4y5acn0kyijv096axdnrvaj5ya5yypzfcaqxv24")
+ ,(mozilla-patch "icecat-bug-1292590.patch" "d4b5b8f3e373" "0w8cxn6ryhgxryy8k8i06yw4mknv509ns9ff1avd0hmgxa83mcdp")
+ ,(mozilla-patch "icecat-bug-1298169.patch" "adce603ae36d" "0mgs85cwx61bk17r7npl311l4m8yn4667wyhgjmm2ajiys6nn0yl")
+ ,(mozilla-patch "icecat-bug-1301496.patch" "97268426bb6f" "1z7hg796cgag025gm9pp2szz7w870s7naagdri1dlsilj797v8hr")
+ ,(mozilla-patch "icecat-bug-1299519.patch" "fc055950b6b8" "05iml5k3rzc653jk4imd111sh18625jxfxkcj12kjdihl0gdr4x4")
+ ,(mozilla-patch "icecat-bug-1303710.patch" "6f845c23565b" "01dlbnmpsnwr448fajs276y62gl03r74k1hxnwsg6ihwhnfdvn5a")
+ ,(mozilla-patch "icecat-bug-1301343.patch" "e5d51ca7a3c0" "0hshcz24hc6pkz5pcqxhajm17ibwrlfn1s00frfnpjjy56vacfz0")
+ ,(mozilla-patch "icecat-bug-1299686.patch" "576f1725a57e" "1lic9d3r8r1vcniw1g3ca71390lw3dmwjsw55dp6z96hyjbcq3fd")))
(modules '((guix build utils)))
(snippet
'(begin
+ (use-modules (ice-9 ftw))
;; Remove bundled libraries that we don't use, since they may
;; contain unpatched security flaws, they waste disk space and
;; network bandwidth, and may cause confusion.
@@ -358,6 +392,12 @@ standards.")
"gfx/cairo"
"js/src/ctypes/libffi"
"db/sqlite3"))
+ ;; Delete .pyc files, typically present in icecat source tarballs
+ (for-each delete-file (find-files "." "\\.pyc$"))
+ ;; Delete obj-* directories, found in icecat-45.3.0-gnu1-beta
+ (for-each delete-file-recursively
+ (scandir "." (lambda (name)
+ (string-prefix? "obj-" name))))
#t))))
(build-system gnu-build-system)
(inputs
@@ -391,7 +431,21 @@ standards.")
("mit-krb5" ,mit-krb5)
("nspr" ,nspr)
("nss" ,nss)
- ("sqlite" ,sqlite)
+
+ ;; XXX Work around the fact that our 'sqlite' package was not built
+ ;; with -DSQLITE_ENABLE_DBSTAT_VTAB.
+ ("sqlite" ,(package
+ (inherit sqlite)
+ (arguments
+ `(#:configure-flags
+ ;; Add -DSQLITE_SECURE_DELETE, -DSQLITE_ENABLE_UNLOCK_NOTIFY and
+ ;; -DSQLITE_ENABLE_DBSTAT_VTAB to CFLAGS. GNU Icecat will refuse
+ ;; to use the system SQLite unless these options are enabled.
+ (list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE "
+ "-DSQLITE_ENABLE_UNLOCK_NOTIFY "
+ "-DSQLITE_ENABLE_DBSTAT_VTAB"))))))
+ ;;("sqlite" ,sqlite)
+
("startup-notification" ,startup-notification)
("unzip" ,unzip)
("yasm" ,yasm)
@@ -401,7 +455,8 @@ standards.")
`(("perl" ,perl)
("python" ,python-2) ; Python 3 not supported
("python2-pysqlite" ,python2-pysqlite)
- ("pkg-config" ,pkg-config)))
+ ("pkg-config" ,pkg-config)
+ ("which" ,which)))
(arguments
`(#:tests? #f ; no check target
#:out-of-source? #t ; must be built outside of the source directory
@@ -432,6 +487,11 @@ standards.")
"--disable-debug"
"--disable-debug-symbols"
+ ;; Temporary hack to work around missing
+ ;; "unofficial" branding in
+ ;; icecat-45.3.0-gnu1-beta.
+ "--enable-official-branding"
+
;; Avoid bundled libraries.
"--with-system-zlib"
"--with-system-bz2"
@@ -597,5 +657,4 @@ features built-in privacy-protecting features.")
(properties
`((ftp-directory . "/gnu/gnuzilla")
(cpe-name . "firefox_esr")
- (cpe-version . ,(string-drop-right version
- (string-length "-gnu1")))))))
+ (cpe-version . ,(first (string-split version #\-)))))))
diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm
index e1b27519e0..6bb5e87a94 100644
--- a/gnu/packages/guile.scm
+++ b/gnu/packages/guile.scm
@@ -219,6 +219,7 @@ without requiring the source code to be rewritten.")
(snippet '(for-each delete-file
(find-files "prebuilt" "\\.go$")))))
(synopsis "Snapshot of what will become version 2.2 of GNU Guile")
+ (properties '((timeout . 72000))) ; 20 hours
(native-search-paths
(list (search-path-specification
(variable "GUILE_LOAD_PATH")
diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index cf17c4f3d8..52e4bc3484 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -1170,12 +1170,10 @@ version 1.3).")
(build-system haskell-build-system)
(inputs
`(("ghc-blaze-builder" ,ghc-blaze-builder)
- ("ghc-directory" ,ghc-directory)
("ghc-network" ,ghc-network)
("ghc-random" ,ghc-random)
("ghc-stm" ,ghc-stm)
("ghc-text" ,ghc-text)
- ("ghc-transformers" ,ghc-transformers)
("ghc-zlib" ,ghc-zlib)))
(native-inputs
`(("ghc-quickcheck" ,ghc-quickcheck)
@@ -6320,6 +6318,204 @@ definition lists, tables, and other features. A compatibility mode is
provided for those who need a drop-in replacement for Markdown.pl.")
(license license:gpl2+)))
+(define-public ghc-hs-bibutils
+ (package
+ (name "ghc-hs-bibutils")
+ (version "5.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://hackage.haskell.org/package/hs-bibutils/hs-bibutils-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0pf5lh179rw9jkmw16ss3kiwydlj6zgfk868mjl5s57kx55z7ycm"))))
+ (build-system haskell-build-system)
+ (inputs `(("ghc-syb" ,ghc-syb)))
+ (home-page "https://hackage.haskell.org/package/hs-bibutils")
+ (synopsis "Haskell bindings to bibutils")
+ (description
+ "This package provides Haskell bindings to @code{bibutils}, a library
+that interconverts between various bibliography formats using a common
+MODS-format XML intermediate.")
+ (license license:gpl2+)))
+
+(define-public ghc-rfc5051
+ (package
+ (name "ghc-rfc5051")
+ (version "0.1.0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/rfc5051/"
+ "rfc5051-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0av4c3qvwbkbzrjrrg601ay9pds7wscqqp2lc2z78mv2lllap3g3"))))
+ (build-system haskell-build-system)
+ (home-page "http://hackage.haskell.org/package/rfc5051")
+ (synopsis "Simple unicode collation as per RFC5051")
+ (description
+ "This library implements @code{unicode-casemap}, the simple, non
+locale-sensitive unicode collation algorithm described in RFC 5051. Proper
+unicode collation can be done using @code{text-icu}, but that is a big
+dependency that depends on a large C library, and @code{rfc5051} might be
+better for some purposes.")
+ (license license:bsd-3)))
+
+(define-public ghc-conduit-extra
+ (package
+ (name "ghc-conduit-extra")
+ (version "1.1.13.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "conduit-extra/conduit-extra-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "108vsn9dpsfwvar7nssw6wkqy26rxlf3p4ran6swa5xh8l6d5k4z"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-conduit" ,ghc-conduit)
+ ("ghc-exceptions" ,ghc-exceptions)
+ ("ghc-monad-control" ,ghc-monad-control)
+ ("ghc-text" ,ghc-text)
+ ("ghc-transformers-base" ,ghc-transformers-base)
+ ("ghc-async" ,ghc-async)
+ ("ghc-attoparsec" ,ghc-attoparsec)
+ ("ghc-blaze-builder" ,ghc-blaze-builder)
+ ("ghc-network" ,ghc-network)
+ ("ghc-primitive" ,ghc-primitive)
+ ("ghc-resourcet" ,ghc-resourcet)
+ ("ghc-stm" ,ghc-stm)
+ ("ghc-streaming-commons" ,ghc-streaming-commons)
+ ("ghc-hspec" ,ghc-hspec)
+ ("ghc-bytestring-builder" ,ghc-bytestring-builder)
+ ("ghc-quickcheck" ,ghc-quickcheck)))
+ (native-inputs
+ `(("hspec-discover" ,hspec-discover)))
+ (home-page "http://github.com/snoyberg/conduit")
+ (synopsis "Conduit adapters for common libraries")
+ (description
+ "The @code{conduit} package itself maintains relative small dependencies.
+The purpose of this package is to collect commonly used utility functions
+wrapping other library dependencies, without depending on heavier-weight
+dependencies. The basic idea is that this package should only depend on
+@code{haskell-platform} packages and @code{conduit}.")
+ (license license:expat)))
+
+(define-public ghc-xml-types
+ (package
+ (name "ghc-xml-types")
+ (version "0.3.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/xml-types/"
+ "xml-types-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1jgqxsa9p2q3h6nymbfmvhldqrqlwrhrzmwadlyc0li50x0d8dwr"))))
+ (build-system haskell-build-system)
+ (inputs `(("ghc-text" ,ghc-text)))
+ (home-page "https://john-millikin.com/software/haskell-xml/")
+ (synopsis "Basic types for representing XML")
+ (description "This package provides basic types for representing XML
+documents.")
+ (license license:expat)))
+
+(define-public ghc-xml-conduit
+ (package
+ (name "ghc-xml-conduit")
+ (version "1.3.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/xml-conduit/"
+ "xml-conduit-" version ".tar.gz"))
+ (sha256
+ (base32
+ "10yw8jiksw21jgwqjjd1ixflavcblisgkp9qq3ba05vadc35lqr5"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-conduit" ,ghc-conduit)
+ ("ghc-conduit-extra" ,ghc-conduit-extra)
+ ("ghc-resourcet" ,ghc-resourcet)
+ ("ghc-text" ,ghc-text)
+ ("ghc-xml-types" ,ghc-xml-types)
+ ("ghc-attoparsec" ,ghc-attoparsec)
+ ("ghc-blaze-builder" ,ghc-blaze-builder)
+ ("ghc-blaze-markup" ,ghc-blaze-markup)
+ ("ghc-blaze-html" ,ghc-blaze-html)
+ ("ghc-data-default" ,ghc-data-default)
+ ("ghc-monad-control" ,ghc-monad-control)
+ ("ghc-hspec" ,ghc-hspec)
+ ("ghc-hunit" ,ghc-hunit)))
+ (home-page "http://github.com/snoyberg/xml")
+ (synopsis "Utilities for dealing with XML with the conduit package")
+ (description
+ "This package provides pure-Haskell utilities for dealing with XML with
+the @code{conduit} package.")
+ (license license:expat)))
+
+(define-public ghc-pandoc-citeproc
+ (package
+ (name "ghc-pandoc-citeproc")
+ (version "0.10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "pandoc-citeproc/pandoc-citeproc-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "00mprphppk51ylsrkg817mbk23f9fsfvkwzbys9qqbcjbrxi2r94"))))
+ (build-system haskell-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; Tests need to be run after installation.
+ (delete 'check)
+ (add-after 'install 'post-install-check
+ (assoc-ref %standard-phases 'check)))))
+ (inputs
+ `(("ghc-mtl" ,ghc-mtl)
+ ("ghc-pandoc-types" ,ghc-pandoc-types)
+ ("ghc-pandoc" ,ghc-pandoc)
+ ("ghc-tagsoup" ,ghc-tagsoup)
+ ("ghc-aeson" ,ghc-aeson)
+ ("ghc-text" ,ghc-text)
+ ("ghc-vector" ,ghc-vector)
+ ("ghc-xml-conduit" ,ghc-xml-conduit)
+ ("ghc-unordered-containers" ,ghc-unordered-containers)
+ ("ghc-data-default" ,ghc-data-default)
+ ("ghc-setenv" ,ghc-setenv)
+ ("ghc-split" ,ghc-split)
+ ("ghc-yaml" ,ghc-yaml)
+ ("ghc-hs-bibutils" ,ghc-hs-bibutils)
+ ("ghc-rfc5051" ,ghc-rfc5051)
+ ("ghc-syb" ,ghc-syb)
+ ("ghc-parsec" ,ghc-parsec)
+ ("ghc-old-locale" ,ghc-old-locale)
+ ("ghc-aeson-pretty" ,ghc-aeson-pretty)
+ ("ghc-attoparsec" ,ghc-attoparsec)
+ ("ghc-temporary" ,ghc-temporary)))
+ (home-page "https://github.com/jgm/pandoc-citeproc")
+ (synopsis "Library for using pandoc with citeproc")
+ (description
+ "The @code{pandoc-citeproc} library exports functions for using the
+citeproc system with pandoc. It relies on @code{citeproc-hs}, a library for
+rendering bibliographic reference citations into a variety of styles using a
+macro language called @dfn{Citation Style Language} (CSL). This package also
+contains an executable @code{pandoc-citeproc}, which works as a pandoc filter,
+and also has a mode for converting bibliographic databases a YAML format
+suitable for inclusion in pandoc YAML metadata.")
+ (license license:bsd-3)))
+
(define-public ghc-union-find
(package
(name "ghc-union-find")
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index 920a293dbf..7f4327badc 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -636,12 +636,15 @@ graphics image formats like PNG, BMP, JPEG, TIFF and others.")
"/lib/python2.7/site-packages")
;; OpenEXR is not enabled by default.
"-DWITH_OPENEXR=1"
+ ;; Fix rounding error on 32-bit machines
+ "-DCMAKE_C_FLAGS=-ffloat-store"
;; The header files of ilmbase are not found when included
;; by the header files of openexr, and an explicit flag
;; needs to be set.
(string-append "-DCMAKE_CXX_FLAGS=-I"
(assoc-ref %build-inputs "ilmbase")
- "/include/OpenEXR"))))
+ "/include/OpenEXR"
+ " -ffloat-store"))))
(synopsis "Computer vision library")
(description
"VIGRA stands for Vision with Generic Algorithms. It is an image
diff --git a/gnu/packages/irc.scm b/gnu/packages/irc.scm
index ba073bc771..a516629dbf 100644
--- a/gnu/packages/irc.scm
+++ b/gnu/packages/irc.scm
@@ -3,7 +3,7 @@
;;; Copyright © 2014 Kevin Lemonnier <lemonnierk@ulrar.net>
;;; Copyright © 2015 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2015, 2016 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
+;;; Copyright © 2016 ng0 <ngillmann@runbox.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -26,6 +26,7 @@
#:use-module (guix packages)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system python)
#:use-module (gnu packages)
#:use-module (gnu packages aspell)
#:use-module (gnu packages autogen)
@@ -48,7 +49,8 @@
#:use-module (gnu packages python)
#:use-module (gnu packages qt)
#:use-module (gnu packages tcl)
- #:use-module (gnu packages tls))
+ #:use-module (gnu packages tls)
+ #:use-module (gnu packages web))
(define-public quassel
(package
@@ -291,3 +293,39 @@ and extensible with plugins and scripts.")
(description
"sic is a simple IRC client, even more minimalistic than ii.")
(license license:expat)))
+
+(define-public limnoria
+ (package
+ (name "limnoria")
+ (version "2016.08.07")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "limnoria" version))
+ (sha256
+ (base32
+ "0w1d98hfhn4iqrczam7zahhqsvxa79n3xfcrm4jwkg5lba4f9ccm"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-pytz" ,python-pytz)
+ ("python-chardet" ,python-chardet)
+ ("python-dateutil" ,python-dateutil)
+ ("python-gnupg" ,python-gnupg)
+ ("python-feedparser" ,python-feedparser)
+ ("python-sqlalchemy" ,python-sqlalchemy)
+ ("python-socksipy-branch" ,python-socksipy-branch)
+ ("python-ecdsa" ,python-ecdsa)))
+ (native-inputs
+ `(("python-mock" ,python-mock)))
+ ;; Despite the existence of a test folder there is no test phase.
+ ;; We need to package https://github.com/ProgVal/irctest and write
+ ;; our own testphase.
+ (arguments
+ `(#:tests? #f))
+ (home-page "https://github.com/ProgVal/Limnoria")
+ (synopsis "Modified version of Supybot (an IRC bot and framework)")
+ (description
+ "Modified version of Supybot with Python 3 and IRCv3 support,
+embedded web server, translations (fr, fi, it, hu, de), and many
+other enhancements and bug fixes.")
+ (license license:bsd-3)))
diff --git a/gnu/packages/libupnp.scm b/gnu/packages/libupnp.scm
index 2f9a5741d7..b9209bf04b 100644
--- a/gnu/packages/libupnp.scm
+++ b/gnu/packages/libupnp.scm
@@ -17,6 +17,7 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages libupnp)
+ #:use-module (gnu packages)
#:use-module (guix licenses)
#:use-module (guix packages)
#:use-module (guix download)
@@ -31,6 +32,7 @@
(method url-fetch)
(uri (string-append "mirror://sourceforge/pupnp/pupnp/libUPnP%20"
version "/" name "-" version ".tar.bz2"))
+ (patches (search-patches "libupnp-CVE-2016-6255.patch"))
(sha256
(base32
"0qrsdsb1qm85hc4jy04qph895613d148f0x1mmk6z99y3q43fdgf"))))
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index b77ca774b4..58b74f487c 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -34,6 +34,7 @@
(define-module (gnu packages linux)
#:use-module (gnu packages)
+ #:use-module (gnu packages acl)
#:use-module (gnu packages admin)
#:use-module (gnu packages algebra)
#:use-module (gnu packages attr)
@@ -321,14 +322,14 @@ It has been modified to remove all non-free binary blobs.")
(define %intel-compatible-systems '("x86_64-linux" "i686-linux"))
(define-public linux-libre
- (make-linux-libre "4.8"
- "0fnax2qb597zg2gchab9n9fn7551vccmqfcvq5k3ckz24y50yknm"
+ (make-linux-libre "4.8.1"
+ "0l57ab8v52nvx4d898qfvkl7c6zlrm7qd080z6jg0bg0adn4w5lf"
%intel-compatible-systems
#:configuration-file kernel-config))
(define-public linux-libre-4.4
- (make-linux-libre "4.4.23"
- "07akixpxlcrpfsadnppyk2hbggqf7j2hzlkg56k0yh3dhyglxv86"
+ (make-linux-libre "4.4.24"
+ "1wg1d9rq29612psr5v4krabx7nv1y1gzfshq7wpx6i1lpqf3lill"
%intel-compatible-systems
#:configuration-file kernel-config))
@@ -339,8 +340,8 @@ It has been modified to remove all non-free binary blobs.")
#:configuration-file kernel-config))
;; Avoid rebuilding kernel variants when there is a minor version bump.
-(define %linux-libre-version "4.7.6")
-(define %linux-libre-hash "0716lpzq3w2pdc0nrrx06gqzdfzhkrjq7g37v4ws9wjlzak8hkvy")
+(define %linux-libre-version "4.8.1")
+(define %linux-libre-hash "0l57ab8v52nvx4d898qfvkl7c6zlrm7qd080z6jg0bg0adn4w5lf")
(define-public linux-libre-arm-generic
(make-linux-libre %linux-libre-version
@@ -1657,14 +1658,14 @@ time.")
(define-public lvm2
(package
(name "lvm2")
- (version "2.02.109")
+ (version "2.02.166")
(source (origin
(method url-fetch)
(uri (string-append "ftp://sources.redhat.com/pub/lvm2/releases/LVM2."
version ".tgz"))
(sha256
(base32
- "1rv5ivg0l1w3nwzwdkqixm96h5bzg7ib4rr196ysb2lw42jmpjbv"))
+ "150v0mawd2swdvypcmkjd3h3s4n5i1220h6sxx94a8jvp1kb0871"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -1683,16 +1684,27 @@ time.")
(inputs
`(("udev" ,eudev)))
(arguments
- '(#:phases (alist-cons-after
- 'configure 'set-makefile-shell
- (lambda _
- ;; Use 'sh', not 'bash', so that '. lib/utils.sh' works as
- ;; expected.
- (setenv "SHELL" (which "sh"))
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-after 'configure 'set-makefile-shell
+ (lambda _
+ ;; Use 'sh', not 'bash', so that '. lib/utils.sh' works as
+ ;; expected.
+ (setenv "SHELL" (which "sh"))
- ;; Replace /bin/sh with the right file name.
- (patch-makefile-SHELL "make.tmpl"))
- %standard-phases)
+ ;; Replace /bin/sh with the right file name.
+ (patch-makefile-SHELL "make.tmpl")
+ #t))
+ (add-before 'strip 'make-objects-writable
+ (lambda* (#:key outputs #:allow-other-keys)
+ ;; Make compiled objects writable so they can be stripped.
+ (let ((out (assoc-ref outputs "out")))
+ (for-each (lambda (file)
+ (chmod file #o755))
+ (append
+ (find-files (string-append out "/lib"))
+ (find-files (string-append out "/sbin"))))
+ #t))))
#:configure-flags (list (string-append "--sysconfdir="
(assoc-ref %outputs "out")
@@ -2996,3 +3008,35 @@ and other hardware errors on x86 systems. It can also perform user-defined
tasks, such as bringing bad pages off-line, when configurable error thresholds
are exceeded.")
(license license:gpl2)))
+
+(define-public mtd-utils
+ (package
+ (name "mtd-utils")
+ (version "1.5.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "ftp://ftp.infradead.org/pub/mtd-utils/"
+ "mtd-utils-" version ".tar.bz2"))
+ (sha256
+ (base32
+ "007lhsd8yb34l899r4m37whhzdw815cz4fnjbpnblfha524p7dax"))))
+ (inputs
+ `(("acl" ,acl)
+ ("libuuid" ,util-linux)
+ ("lzo", lzo)
+ ("zlib" ,zlib)))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:test-target "tests"
+ #:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out")))
+ #:phases (modify-phases %standard-phases
+ (delete 'configure))))
+ (synopsis "MTD Flash Storage Utilities")
+ (description "This package provides utilities for testing, partitioning, etc
+of flash storage.")
+ (home-page "http://www.linux-mtd.infradead.org/")
+ (license
+ (list license:gpl2 ; Almost everything is gpl2 or gpl2+
+ license:mpl1.1 ; All ftl* files
+ license:expat)))) ; libiniparser
diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 2e50897594..d0837606f3 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -33,6 +33,8 @@
#:use-module (guix git-download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system asdf)
+ #:use-module (guix build-system trivial)
#:use-module (gnu packages base)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages bdw-gc)
@@ -47,6 +49,17 @@
#:use-module (ice-9 match)
#:use-module (srfi srfi-1))
+(define (asdf-substitutions lisp)
+ ;; Prepend XDG_DATA_DIRS/LISP-bundle-systems to ASDF's
+ ;; 'default-system-source-registry'.
+ `((("\\(,dir \"systems/\"\\)\\)")
+ (format #f
+ "(,dir \"~a-bundle-systems\")))
+
+ ,@(loop :for dir :in (xdg-data-dirs \"common-lisp/\")
+ :collect `(:directory (,dir \"systems\"))"
+ ,lisp))))
+
(define-public gcl
(package
(name "gcl")
@@ -112,7 +125,12 @@ interface to the Tk widget system.")
"https://common-lisp.net/project/ecl/static/files/release/"
name "-" version ".tgz"))
(sha256
- (base32 "16ab8qs3awvdxy8xs8jy82v8r04x4wr70l9l2j45vgag18d2nj1d"))))
+ (base32 "16ab8qs3awvdxy8xs8jy82v8r04x4wr70l9l2j45vgag18d2nj1d"))
+ (modules '((guix build utils)))
+ (snippet
+ ;; Add ecl-bundle-systems to 'default-system-source-registry'.
+ `(substitute* "contrib/asdf/asdf.lisp"
+ ,@(asdf-substitutions name)))))
(build-system gnu-build-system)
;; src/configure uses 'which' to confirm the existence of 'gzip'.
(native-inputs `(("which" ,which)))
@@ -153,6 +171,10 @@ interface to the Tk widget system.")
`("LIBRARY_PATH" suffix ,library-directories)
`("LD_LIBRARY_PATH" suffix ,library-directories)))))
(add-after 'wrap 'check (assoc-ref %standard-phases 'check)))))
+ (native-search-paths
+ (list (search-path-specification
+ (variable "XDG_DATA_DIRS")
+ (files '("share")))))
(home-page "http://ecls.sourceforge.net/")
(synopsis "Embeddable Common Lisp")
(description "ECL is an implementation of the Common Lisp language as
@@ -226,7 +248,12 @@ an interpreter, a compiler, a debugger, and much more.")
(uri (string-append "mirror://sourceforge/sbcl/sbcl/" version "/sbcl-"
version "-source.tar.bz2"))
(sha256
- (base32 "0fjdqnb2rsm2vi9794ywp27jr239ddvzc4xfr0dk49jd4v7p2kc5"))))
+ (base32 "0fjdqnb2rsm2vi9794ywp27jr239ddvzc4xfr0dk49jd4v7p2kc5"))
+ (modules '((guix build utils)))
+ (snippet
+ ;; Add sbcl-bundle-systems to 'default-system-source-registry'.
+ `(substitute* "contrib/asdf/asdf.lisp"
+ ,@(asdf-substitutions name)))))
(build-system gnu-build-system)
(outputs '("out" "doc"))
;; Bootstrap with CLISP.
@@ -315,6 +342,10 @@ an interpreter, a compiler, a debugger, and much more.")
#t))))
;; No 'check' target, though "make.sh" (build phase) runs tests.
#:tests? #f))
+ (native-search-paths
+ (list (search-path-specification
+ (variable "XDG_DATA_DIRS")
+ (files '("share")))))
(home-page "http://www.sbcl.org/")
(synopsis "Common Lisp implementation")
(description "Steel Bank Common Lisp (SBCL) is a high performance Common
@@ -492,3 +523,552 @@ simple, elegant Scheme dialect. It is a lisp-1 with lexical scope.
The core is 12 builtin special forms and 33 builtin functions.")
(home-page "https://github.com/JeffBezanson/femtolisp")
(license license:bsd-3))))
+
+(define-public sbcl-alexandria
+ (let ((revision "1")
+ (commit "926a066611b7b11cb71e26c827a271e500888c30"))
+ (package
+ (name "sbcl-alexandria")
+ (version (string-append "0.0.0-" revision "." (string-take commit 7)))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://gitlab.common-lisp.net/alexandria/alexandria.git")
+ (commit commit)))
+ (sha256
+ (base32
+ "18yncicdkh294j05rhgm23gzi36y9qy6vrfba8vg69jrxjp1hx8l"))
+ (file-name (string-append "alexandria-" version "-checkout"))))
+ (build-system asdf-build-system/sbcl)
+ (synopsis "Collection of portable utilities for Common Lisp")
+ (description
+ "Alexandria is a collection of portable utilities. It does not contain
+conceptual extensions to Common Lisp. It is conservative in scope, and
+portable between implementations.")
+ (home-page "https://common-lisp.net/project/alexandria/")
+ (license license:public-domain))))
+
+(define-public cl-alexandria
+ (sbcl-package->cl-source-package sbcl-alexandria))
+
+(define-public ecl-alexandria
+ (sbcl-package->ecl-package sbcl-alexandria))
+
+(define-public sbcl-fiveam
+ (package
+ (name "sbcl-fiveam")
+ (version "1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/sionescu/fiveam/archive/v"
+ version ".tar.gz"))
+ (sha256
+ (base32 "0f48pcbhqs3wwwzjl5nk57d4hcbib4l9xblxc66b8c2fhvhmhxnv"))
+ (file-name (string-append "fiveam-" version ".tar.gz"))))
+ (inputs `(("sbcl-alexandria" ,sbcl-alexandria)))
+ (build-system asdf-build-system/sbcl)
+ (synopsis "Common Lisp testing framework")
+ (description "FiveAM is a simple (as far as writing and running tests
+goes) regression testing framework. It has been designed with Common Lisp's
+interactive development model in mind.")
+ (home-page "https://common-lisp.net/project/fiveam/")
+ (license license:bsd-3)))
+
+(define-public cl-fiveam
+ (sbcl-package->cl-source-package sbcl-fiveam))
+
+(define-public ecl-fiveam
+ (sbcl-package->ecl-package sbcl-fiveam))
+
+(define-public sbcl-bordeaux-threads
+ (package
+ (name "sbcl-bordeaux-threads")
+ (version "0.8.5")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/sionescu/bordeaux-threads/archive/v"
+ version ".tar.gz"))
+ (sha256
+ (base32 "10ryrcx832fwqdawb6jmknymi7wpdzhi30qzx7cbrk0cpnka71w2"))
+ (file-name
+ (string-append "bordeaux-threads-" version ".tar.gz"))))
+ (inputs `(("sbcl-alexandria" ,sbcl-alexandria)))
+ (native-inputs `(("tests:cl-fiveam" ,sbcl-fiveam)))
+ (build-system asdf-build-system/sbcl)
+ (synopsis "Portable shared-state concurrency library for Common Lisp")
+ (description "BORDEAUX-THREADS is a proposed standard for a minimal
+MP/Threading interface. It is similar to the CLIM-SYS threading and lock
+support.")
+ (home-page "https://common-lisp.net/project/bordeaux-threads/")
+ (license license:x11)))
+
+(define-public cl-bordeaux-threads
+ (sbcl-package->cl-source-package sbcl-bordeaux-threads))
+
+(define-public ecl-bordeaux-threads
+ (sbcl-package->ecl-package sbcl-bordeaux-threads))
+
+(define-public sbcl-trivial-gray-streams
+ (let ((revision "1")
+ (commit "0483ade330508b4b2edeabdb47d16ec9437ee1cb"))
+ (package
+ (name "sbcl-trivial-gray-streams")
+ (version (string-append "0.0.0-" revision "." (string-take commit 7)))
+ (source
+ (origin
+ (method git-fetch)
+ (uri
+ (git-reference
+ (url "https://github.com/trivial-gray-streams/trivial-gray-streams.git")
+ (commit commit)))
+ (sha256
+ (base32 "0m3rpf2x0zmdk3nf1qfa01j6a55vj7gkwhyw78qslcgbjlgh8p4d"))
+ (file-name
+ (string-append "trivial-gray-streams-" version "-checkout"))))
+ (build-system asdf-build-system/sbcl)
+ (synopsis "Compatibility layer for Gray streams implementations")
+ (description "Gray streams is an interface proposed for inclusion with
+ANSI CL by David N. Gray. The proposal did not make it into ANSI CL, but most
+popular CL implementations implement it. This package provides an extremely
+thin compatibility layer for gray streams.")
+ (home-page "http://www.cliki.net/trivial-gray-streams")
+ (license license:x11))))
+
+(define-public cl-trivial-gray-streams
+ (sbcl-package->cl-source-package sbcl-trivial-gray-streams))
+
+(define-public ecl-trivial-gray-streams
+ (sbcl-package->ecl-package sbcl-trivial-gray-streams))
+
+(define-public sbcl-flexi-streams
+ (package
+ (name "sbcl-flexi-streams")
+ (version "1.0.12")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/edicl/flexi-streams/archive/v"
+ version ".tar.gz"))
+ (sha256
+ (base32 "16grnxvs7vqm5s6myf8a5s7vwblzq1kgwj8i7ahz8vwvihm9gzfi"))
+ (file-name (string-append "flexi-streams-" version ".tar.gz"))))
+ (build-system asdf-build-system/sbcl)
+ (inputs `(("sbcl-trivial-gray-streams" ,sbcl-trivial-gray-streams)))
+ (synopsis "Implementation of virtual bivalent streams for Common Lisp")
+ (description "Flexi-streams is an implementation of \"virtual\" bivalent
+streams that can be layered atop real binary or bivalent streams and that can
+be used to read and write character data in various single- or multi-octet
+encodings which can be changed on the fly. It also supplies in-memory binary
+streams which are similar to string streams.")
+ (home-page "http://weitz.de/flexi-streams/")
+ (license license:bsd-3)))
+
+(define-public cl-flexi-streams
+ (sbcl-package->cl-source-package sbcl-flexi-streams))
+
+(define-public ecl-flexi-streams
+ (sbcl-package->ecl-package sbcl-flexi-streams))
+
+(define-public sbcl-cl-ppcre
+ (package
+ (name "sbcl-cl-ppcre")
+ (version "2.0.11")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/edicl/cl-ppcre/archive/v"
+ version ".tar.gz"))
+ (sha256
+ (base32 "1i7daxf0wnydb0pgwiym7qh2wy70n14lxd6dyv28sy0naa8p31gd"))
+ (file-name (string-append "cl-ppcre-" version ".tar.gz"))))
+ (build-system asdf-build-system/sbcl)
+ (native-inputs `(("tests:cl-flexi-streams" ,sbcl-flexi-streams)))
+ (synopsis "Portable regular expression library for Common Lisp")
+ (description "CL-PPCRE is a portable regular expression library for Common
+Lisp, which is compatible with perl. It is pretty fast, thread-safe, and
+compatible with ANSI-compliant Common Lisp implementations.")
+ (home-page "http://weitz.de/cl-ppcre/")
+ (license license:bsd-2)))
+
+(define-public cl-ppcre
+ (sbcl-package->cl-source-package sbcl-cl-ppcre))
+
+(define-public ecl-cl-ppcre
+ (sbcl-package->ecl-package sbcl-cl-ppcre))
+
+(define-public sbcl-clx
+ (let ((revision "1")
+ (commit "1c62774b03c1cf3fe6e5cb532df8b14b44c96b95"))
+ (package
+ (name "sbcl-clx")
+ (version (string-append "0.0.0-" revision "." (string-take commit 7)))
+ (source
+ (origin
+ (method git-fetch)
+ (uri
+ (git-reference
+ (url "https://github.com/sharplispers/clx.git")
+ (commit commit)))
+ (sha256
+ (base32 "0qffag03ns52kwq9xjns2qg1yr0bf3ba507iwq5cmx5xz0b0rmjm"))
+ (file-name (string-append "clx-" version "-checkout"))
+ (patches
+ (list
+ (search-patch "clx-remove-demo.patch")))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ ;; These removed files cause the compiled system to crash when
+ ;; loading.
+ (delete-file-recursively "demo")
+ (delete-file "test/trapezoid.lisp")
+ (substitute* "clx.asd"
+ (("\\(:file \"trapezoid\"\\)") ""))))))
+ (build-system asdf-build-system/sbcl)
+ (arguments
+ '(#:special-dependencies '("sb-bsd-sockets")))
+ (home-page "http://www.cliki.net/portable-clx")
+ (synopsis "X11 client library for Common Lisp")
+ (description "CLX is an X11 client library for Common Lisp. The code was
+originally taken from a CMUCL distribution, was modified somewhat in order to
+make it compile and run under SBCL, then a selection of patches were added
+from other CLXes around the net.")
+ (license license:x11))))
+
+(define-public cl-clx
+ (sbcl-package->cl-source-package sbcl-clx))
+
+(define-public ecl-clx
+ (sbcl-package->ecl-package sbcl-clx))
+
+(define-public sbcl-stumpwm
+ (package
+ (name "sbcl-stumpwm")
+ (version "0.9.9")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/stumpwm/stumpwm/archive/"
+ version ".tar.gz"))
+ (sha256
+ (base32 "1fqabij4zcsqg1ywgdv2irp1ys23dwc8ms9ai55lb2i47hgv7z3x"))
+ (file-name (string-append "stumpwm-" version ".tar.gz"))))
+ (build-system asdf-build-system/sbcl)
+ (inputs `(("sbcl-cl-ppcre" ,sbcl-cl-ppcre)
+ ("sbcl-clx" ,sbcl-clx)))
+ (outputs '("out" "bin"))
+ (arguments
+ '(#:special-dependencies '("sb-posix")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'create-symlinks 'build-program
+ (lambda* (#:key lisp outputs inputs #:allow-other-keys)
+ (build-program
+ lisp
+ (string-append (assoc-ref outputs "bin") "/bin/stumpwm")
+ #:inputs inputs
+ #:entry-program '((stumpwm:stumpwm) 0))))
+ (add-after 'build-program 'create-desktop-file
+ (lambda* (#:key outputs lisp binary? #:allow-other-keys)
+ (let ((output (or (assoc-ref outputs "bin")
+ (assoc-ref outputs "out")))
+ (xsessions "/share/xsessions"))
+ (mkdir-p (string-append output xsessions))
+ (with-output-to-file
+ (string-append output xsessions
+ "/stumpwm.desktop")
+ (lambda _
+ (format #t
+ "[Desktop Entry]~@
+ Name=stumpwm~@
+ Comment=The Stump Window Manager~@
+ Exec=~a/bin/stumpwm~@
+ TryExec=~@*~a/bin/stumpwm~@
+ Icon=~@
+ Type=Application~%"
+ output)))
+ #t))))))
+ (synopsis "Window manager written in Common Lisp")
+ (description "Stumpwm is a window manager written entirely in Common Lisp.
+It attempts to be highly customizable while relying entirely on the keyboard
+for input. These design decisions reflect the growing popularity of
+productive, customizable lisp based systems.")
+ (home-page "http://github.com/stumpwm/stumpwm")
+ (license license:gpl2+)
+ (properties `((ecl-variant . ,(delay ecl-stumpwm))))))
+
+(define-public cl-stumpwm
+ (sbcl-package->cl-source-package sbcl-stumpwm))
+
+(define-public ecl-stumpwm
+ (let ((base (sbcl-package->ecl-package sbcl-stumpwm)))
+ (package
+ (inherit base)
+ (outputs '("out"))
+ (arguments '()))))
+
+(define sbcl-slynk-boot0
+ (let ((revision "1")
+ (commit "5706cd45d484a4f25795abe8e643509d31968aa2"))
+ (package
+ (name "sbcl-slynk")
+ (version (string-append "1.0.0-beta-" revision "." (string-take commit 7)))
+ (source
+ (origin
+ (method git-fetch)
+ (uri
+ (git-reference
+ (url "https://github.com/joaotavora/sly.git")
+ (commit commit)))
+ (sha256
+ (base32 "0h4gg3sndl2bf6jdnx9nrf14p9hhi43hagrl0f4v4l11hczl8w81"))
+ (file-name (string-append "slynk-" version "-checkout"))
+ (modules '((guix build utils)
+ (ice-9 ftw)))
+ (snippet
+ '(begin
+ ;; Move the contribs into the main source directory for easier
+ ;; access
+ (substitute* "slynk/slynk.asd"
+ (("\\.\\./contrib")
+ "contrib")
+ (("\\(defsystem :slynk-util")
+ "(defsystem :slynk-util :depends-on (:slynk)"))
+ (substitute* "contrib/slynk-trace-dialog.lisp"
+ (("\\(slynk::reset-inspector\\)") ; Causes problems on load
+ "nil"))
+ (substitute* "contrib/slynk-profiler.lisp"
+ (("slynk:to-line")
+ "slynk-pprint-to-line"))
+ (rename-file "contrib" "slynk/contrib")
+ ;; Move slynk's contents into the base directory for easier
+ ;; access
+ (for-each
+ (lambda (file)
+ (unless (string-prefix? "." file)
+ (rename-file (string-append "slynk/" file)
+ (string-append "./" (basename file)))))
+ (scandir "slynk"))))))
+ (build-system asdf-build-system/sbcl)
+ (arguments
+ `(#:tests? #f)) ; No test suite
+ (synopsis "Common Lisp IDE for Emacs")
+ (description "SLY is a fork of SLIME. It also features a completely
+redesigned REPL based on Emacs's own full-featured comint.el, live code
+annotations, and a consistent interactive button interface. Everything can be
+copied to the REPL. One can create multiple inspectors with independent
+history.")
+ (home-page "https://github.com/joaotavora/sly")
+ (license license:public-domain)
+ (properties `((cl-source-variant . ,(delay cl-slynk)))))))
+
+(define-public cl-slynk
+ (sbcl-package->cl-source-package sbcl-slynk-boot0))
+
+(define ecl-slynk-boot0
+ (sbcl-package->ecl-package sbcl-slynk-boot0))
+
+(define sbcl-slynk-arglists
+ (package
+ (inherit sbcl-slynk-boot0)
+ (name "sbcl-slynk-arglists")
+ (inputs `(("sbcl-slynk" ,sbcl-slynk-boot0)))
+ (arguments
+ `(#:asd-file "slynk.asd"
+ ,@(package-arguments sbcl-slynk-boot0)))))
+
+(define ecl-slynk-arglists
+ (sbcl-package->ecl-package sbcl-slynk-arglists))
+
+(define sbcl-slynk-util
+ (package
+ (inherit sbcl-slynk-arglists)
+ (name "sbcl-slynk-util")))
+
+(define ecl-slynk-util
+ (sbcl-package->ecl-package sbcl-slynk-util))
+
+(define sbcl-slynk-fancy-inspector
+ (package
+ (inherit sbcl-slynk-arglists)
+ (name "sbcl-slynk-fancy-inspector")
+ (inputs `(("sbcl-slynk-util" ,sbcl-slynk-util)
+ ,@(package-inputs sbcl-slynk-arglists)))))
+
+(define ecl-slynk-fancy-inspector
+ (sbcl-package->ecl-package sbcl-slynk-fancy-inspector))
+
+(define sbcl-slynk-package-fu
+ (package
+ (inherit sbcl-slynk-arglists)
+ (name "sbcl-slynk-package-fu")))
+
+(define ecl-slynk-package-fu
+ (sbcl-package->ecl-package sbcl-slynk-package-fu))
+
+(define sbcl-slynk-mrepl
+ (package
+ (inherit sbcl-slynk-arglists)
+ (name "sbcl-slynk-mrepl")))
+
+(define ecl-slynk-mrepl
+ (sbcl-package->ecl-package sbcl-slynk-mrepl))
+
+(define sbcl-slynk-trace-dialog
+ (package
+ (inherit sbcl-slynk-arglists)
+ (name "sbcl-slynk-trace-dialog")))
+
+(define ecl-slynk-trace-dialog
+ (sbcl-package->ecl-package sbcl-slynk-trace-dialog))
+
+(define sbcl-slynk-profiler
+ (package
+ (inherit sbcl-slynk-arglists)
+ (name "sbcl-slynk-profiler")))
+
+(define ecl-slynk-profiler
+ (sbcl-package->ecl-package sbcl-slynk-profiler))
+
+(define sbcl-slynk-stickers
+ (package
+ (inherit sbcl-slynk-arglists)
+ (name "sbcl-slynk-stickers")))
+
+(define ecl-slynk-stickers
+ (sbcl-package->ecl-package sbcl-slynk-stickers))
+
+(define sbcl-slynk-indentation
+ (package
+ (inherit sbcl-slynk-arglists)
+ (name "sbcl-slynk-indentation")))
+
+(define ecl-slynk-indentation
+ (sbcl-package->ecl-package sbcl-slynk-indentation))
+
+(define sbcl-slynk-retro
+ (package
+ (inherit sbcl-slynk-arglists)
+ (name "sbcl-slynk-retro")))
+
+(define ecl-slynk-retro
+ (sbcl-package->ecl-package sbcl-slynk-retro))
+
+(define slynk-systems
+ '("slynk"
+ "slynk-util"
+ "slynk-arglists"
+ "slynk-fancy-inspector"
+ "slynk-package-fu"
+ "slynk-mrepl"
+ "slynk-profiler"
+ "slynk-trace-dialog"
+ "slynk-stickers"
+ "slynk-indentation"
+ "slynk-retro"))
+
+(define-public sbcl-slynk
+ (package
+ (inherit sbcl-slynk-boot0)
+ (inputs
+ `(("slynk" ,sbcl-slynk-boot0)
+ ("slynk-util" ,sbcl-slynk-util)
+ ("slynk-arglists" ,sbcl-slynk-arglists)
+ ("slynk-fancy-inspector" ,sbcl-slynk-fancy-inspector)
+ ("slynk-package-fu" ,sbcl-slynk-package-fu)
+ ("slynk-mrepl" ,sbcl-slynk-mrepl)
+ ("slynk-profiler" ,sbcl-slynk-profiler)
+ ("slynk-trace-dialog" ,sbcl-slynk-trace-dialog)
+ ("slynk-stickers" ,sbcl-slynk-stickers)
+ ("slynk-indentation" ,sbcl-slynk-indentation)
+ ("slynk-retro" ,sbcl-slynk-retro)))
+ (native-inputs `(("sbcl" ,sbcl)))
+ (build-system trivial-build-system)
+ (source #f)
+ (outputs '("out" "image"))
+ (arguments
+ `(#:modules ((guix build union)
+ (guix build utils)
+ (guix build lisp-utils))
+ #:builder
+ (begin
+ (use-modules (ice-9 match)
+ (srfi srfi-1)
+ (guix build union)
+ (guix build lisp-utils))
+
+ (union-build
+ (assoc-ref %outputs "out")
+ (filter-map
+ (match-lambda
+ ((name . path)
+ (if (string-prefix? "slynk" name) path #f)))
+ %build-inputs))
+
+ (prepend-to-source-registry
+ (string-append (assoc-ref %outputs "out") "//"))
+ (build-image "sbcl"
+ (string-append
+ (assoc-ref %outputs "image")
+ "/bin/slynk")
+ #:inputs %build-inputs
+ #:dependencies ',slynk-systems))))))
+
+(define-public ecl-slynk
+ (package
+ (inherit sbcl-slynk)
+ (name "ecl-slynk")
+ (inputs
+ (map (match-lambda
+ ((name pkg . _)
+ (list name (sbcl-package->ecl-package pkg))))
+ (package-inputs sbcl-slynk)))
+ (native-inputs '())
+ (outputs '("out"))
+ (arguments
+ '(#:modules ((guix build union))
+ #:builder
+ (begin
+ (use-modules (ice-9 match)
+ (guix build union))
+ (match %build-inputs
+ (((names . paths) ...)
+ (union-build (assoc-ref %outputs "out")
+ paths))))))))
+
+(define-public sbcl-stumpwm+slynk
+ (package
+ (inherit sbcl-stumpwm)
+ (name "sbcl-stumpwm-with-slynk")
+ (outputs '("out"))
+ (native-inputs
+ `(("stumpwm" ,sbcl-stumpwm)
+ ("slynk" ,sbcl-slynk)))
+ (arguments
+ (substitute-keyword-arguments (package-arguments sbcl-stumpwm)
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (replace 'build-program
+ (lambda* (#:key lisp inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (program (string-append out "/bin/stumpwm")))
+ (build-program lisp program
+ #:inputs inputs
+ #:entry-program '((stumpwm:stumpwm) 0)
+ #:dependencies '("stumpwm"
+ ,@slynk-systems))
+ ;; Remove unneeded file.
+ (delete-file (string-append out "/bin/stumpwm-exec.fasl"))
+ #t)))
+ (delete 'copy-source)
+ (delete 'build)
+ (delete 'check)
+ (delete 'link-dependencies)
+ (delete 'cleanup)
+ (delete 'create-symlinks)))))))
diff --git a/gnu/packages/lynx.scm b/gnu/packages/lynx.scm
index 3182b3e3f9..6e4ed6cd13 100644
--- a/gnu/packages/lynx.scm
+++ b/gnu/packages/lynx.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
+;;; Copyright © 2016 Kei Kebreau <kei@openmailbox.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -33,14 +34,15 @@
(define-public lynx
(package
(name "lynx")
- (version "2.8.8rel.2")
+ (version "2.8.9dev.9")
(source (origin
(method url-fetch)
(uri (string-append
"http://invisible-mirror.net/archives/lynx/tarballs"
"/lynx" version ".tar.bz2"))
(sha256
- (base32 "1rxysl08acqll5b87368f04kckl8sggy1qhnq59gsxyny1ffg039"))))
+ (base32
+ "1m72ga89hywm097kazcm8w6sqrfjnl83gh31pkbhk4zhzhfpzxgh"))))
(build-system gnu-build-system)
(native-inputs `(("pkg-config" ,pkg-config)
("perl" ,perl)))
@@ -53,19 +55,21 @@
("gzip" ,gzip)
("bzip2" ,bzip2)))
(arguments
- `(#:configure-flags '("--with-pkg-config"
- "--with-screen=ncurses"
- "--with-zlib"
- "--with-bzlib"
- "--with-gnutls"
- ;; "--with-socks5" ; XXX TODO
- "--enable-widec"
- "--enable-ascii-ctypes"
- "--enable-local-docs"
- "--enable-htmlized-cfg"
- "--enable-gzip-help"
- "--enable-nls"
- "--enable-ipv6")
+ `(#:configure-flags
+ (let ((gnutls (assoc-ref %build-inputs "gnutls")))
+ `("--with-pkg-config"
+ "--with-screen=ncurses"
+ "--with-zlib"
+ "--with-bzlib"
+ ,(string-append "--with-gnutls=" gnutls)
+ ;; "--with-socks5" ; XXX TODO
+ "--enable-widec"
+ "--enable-ascii-ctypes"
+ "--enable-local-docs"
+ "--enable-htmlized-cfg"
+ "--enable-gzip-help"
+ "--enable-nls"
+ "--enable-ipv6"))
#:tests? #f ; no check target
#:phases (alist-replace
'install
diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 09c15e267f..baa5a96185 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -302,7 +302,7 @@ and corrections. It is based on a Bayesian filter.")
(define-public offlineimap
(package
(name "offlineimap")
- (version "7.0.7")
+ (version "7.0.8")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/OfflineIMAP/offlineimap/"
@@ -310,7 +310,7 @@ and corrections. It is based on a Bayesian filter.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1719xnw0xah5knypd5vrpsxi337576q1r8axpziw8wa7zms7abl0"))))
+ "0smxh5ag3cbn92kp49jq950j5m2pivs9kr04prpd1lw62hy7gnhr"))))
(build-system python-build-system)
(inputs `(("python2-pysqlite" ,python2-pysqlite)
("python2-six" ,python2-six)))
diff --git a/gnu/packages/man.scm b/gnu/packages/man.scm
index ddb7a3e283..2d99438420 100644
--- a/gnu/packages/man.scm
+++ b/gnu/packages/man.scm
@@ -134,7 +134,7 @@ the traditional flat-text whatis databases.")
(define-public man-pages
(package
(name "man-pages")
- (version "4.06")
+ (version "4.08")
(source (origin
(method url-fetch)
(uri
@@ -147,7 +147,7 @@ the traditional flat-text whatis databases.")
"man-pages-" version ".tar.xz")))
(sha256
(base32
- "0vv056k9yyf05dqal9m2pq3pv9c8lnp7i5rjxvcnic6aq7vyrafb"))))
+ "1d32ki8nkwd2xiln619jihqn7s15ydrg7386n4hxq530sys7svic"))))
(build-system gnu-build-system)
(arguments
'(#:phases (alist-delete 'configure %standard-phases)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 3bb2a386b0..97f545b8e5 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -14,6 +14,7 @@
;;; Copyright © 2016 Kei Kebreau <kei@openmailbox.org>
;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2016 Thomas Danckaert <post@thomasdanckaert.be>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -483,6 +484,42 @@ extremely large and complex data collections.")
(license (license:x11-style
"http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING"))))
+(define-public hdf-eos5
+ (package
+ (name "hdf-eos5")
+ (version "1.15")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "ftp://edhs1.gsfc.nasa.gov\
+/edhs/hdfeos5/latest_release/HDF-EOS5." version ".tar.Z"))
+ (sha256
+ (base32
+ "1p83333nzzy8rn5chxlm0hrkjjnhh2w1ji8ac0f9q4xzg838i58i"))
+ (patches (search-patches "hdf-eos5-build-shared.patch"
+ "hdf-eos5-remove-gctp.patch"
+ "hdf-eos5-fix-szip.patch"
+ "hdf-eos5-fortrantests.patch"))))
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (build-system gnu-build-system)
+ (inputs
+ `(("hdf5" ,hdf5)
+ ("zlib" ,zlib)
+ ("gctp" ,gctp)))
+ (arguments
+ `(#:configure-flags '("--enable-install-include" "--enable-shared"
+ "CC=h5cc -Df2cFortran" "LIBS=-lgctp")
+ #:parallel-tests? #f))
+ (synopsis "HDF5-based data format for NASA's Earth Observing System")
+ (description
+ "HDF-EOS5 is a software library built on HDF5 to support the construction
+of data structures used in NASA's Earth Observing System (Grid, Point and
+Swath).")
+ (home-page "http://www.hdfeos.org/software/library.php#HDF-EOS5")
+
+ ;; Source files carry a permissive license header.
+ (license (license:non-copyleft home-page))))
+
(define-public hdf5-parallel-openmpi
(package (inherit hdf5)
(name "hdf5-parallel-openmpi")
diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm
index 5a618c2742..0089da1112 100644
--- a/gnu/packages/messaging.scm
+++ b/gnu/packages/messaging.scm
@@ -6,6 +6,7 @@
;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 ng0 <ngillmann@runbox.com>
+;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -32,6 +33,7 @@
#:use-module (guix build-system glib-or-gtk)
#:use-module (guix build-system python)
#:use-module (gnu packages)
+ #:use-module (gnu packages aidc)
#:use-module (gnu packages autotools)
#:use-module (gnu packages avahi)
#:use-module (gnu packages check)
@@ -166,14 +168,14 @@ identi.ca and status.net).")
(define-public hexchat
(package
(name "hexchat")
- (version "2.12.1")
+ (version "2.12.2")
(source (origin
(method url-fetch)
(uri (string-append "https://dl.hexchat.net/hexchat/hexchat-"
version ".tar.xz"))
(sha256
(base32
- "0svwz9ldrry1sn35jywgpacjj1cf3xl3k74ynwn8rjvxs73b00aj"))))
+ "1xnclfbrgbkqndxygi5f27q00jd7yy54jbd1061jmhxa6wzpibbd"))))
(build-system gnu-build-system)
(native-inputs `(("pkg-config" ,pkg-config)
("intltool" ,intltool)))
@@ -661,6 +663,58 @@ protocols.")
instant messenger with audio and video chat capabilities.")
(home-page "http://utox.org/")
(license license:gpl3)))
+
+(define-public qtox
+ (package
+ (name "qtox")
+ (version "1.5.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/qTox/qTox/archive/v"
+ version ".tar.gz"))
+ (sha256
+ (base32 "0y15mc39x54k1kz36cw9412kl1p1p6nzlx97gagv4gg3vybfhbjv"))
+ (file-name (string-append name "-" version ".tar.gz"))))
+ (inputs
+ `(("ffmpeg" ,ffmpeg)
+ ("glib" ,glib)
+ ("gtk+" ,gtk+-2)
+ ("libsodium" ,libsodium)
+ ("libtoxcore" ,libtoxcore)
+ ("libvpx" ,libvpx)
+ ("libxscrnsaver" ,libxscrnsaver)
+ ("libx11" ,libx11)
+ ("openal" ,openal)
+ ("qrencode" ,qrencode)
+ ("qt" ,qt)
+ ("sqlcipher" ,sqlcipher)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("qmake" ,qt)))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-reproducibility-issues
+ (lambda _
+ (substitute* "src/main.cpp"
+ (("__DATE__") "\"\"")
+ (("__TIME__") "\"\"")
+ (("TIMESTAMP") "\"\""))
+ #t))
+ (replace 'configure
+ (lambda* (#:key outputs #:allow-other-keys)
+ (zero?
+ (system* "qmake"
+ (string-append "PREFIX="
+ (assoc-ref outputs "out")))))))))
+ (home-page "https://qtox.github.io/")
+ (synopsis "Tox chat client using Qt")
+ (description "qTox is a Tox client that follows the Tox design
+guidelines. It provides an easy to use application that allows you to
+connect with friends and family without anyone else listening in.")
+ (license license:gpl3+)))
(define-public pybitmessage
(package
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index adaf78e4a3..40f3948bb6 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -1318,14 +1318,14 @@ browser.")
(define-public drumstick
(package
(name "drumstick")
- (version "1.0.2")
+ (version "1.1.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/drumstick/"
version "/drumstick-" version ".tar.bz2"))
(sha256
(base32
- "0l47gy9yywrc860db5g3wdqg8yc8qdb2lqq6wvw1dfim5j0vbail"))))
+ "13pkfqrav30bbcddgf1imd7jk6lpqbxkz1qv31718pdl446jq7df"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ; no test target
@@ -1457,7 +1457,7 @@ capabilities, custom envelopes, effects, etc.")
(define-public yoshimi
(package
(name "yoshimi")
- (version "1.3.8.2")
+ (version "1.4.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/yoshimi/"
@@ -1465,7 +1465,7 @@ capabilities, custom envelopes, effects, etc.")
"/yoshimi-" version ".tar.bz2"))
(sha256
(base32
- "0wl4ln6v1nkkx56kfah23chyrhga2vi93i82g0s200c4s4184xr8"))))
+ "133sx42wb66g803pcrgdwph40wh94knvab3yfqkgm0001jv4v14y"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ; there are no tests
@@ -1485,7 +1485,17 @@ capabilities, custom envelopes, effects, etc.")
(("-msse -msse2 -mfpmath=sse") "")
(("-march=(athlon64|core2)" flag)
(string-append flag " -msse -msse2 -mfpmath=sse")))
- #t)))))
+ #t))
+ ;; Yoshimi tries to find ncurses with pkg-config, but our ncurses
+ ;; package does not install .pc files.
+ (add-after 'unpack 'find-ncurses
+ (lambda _
+ (substitute* "src/CMakeLists.txt"
+ (("LIBNCURSES REQUIRED") "LIBNCURSES")
+ (("NCURSES REQUIRED") "NCURSES")
+ (("FATAL_ERROR \"libncurses") "STATUS \"libncurses")
+ (("\\$\\{NCURSES_LIBRARIES\\}") "ncurses"))
+ #t)))))
(inputs
`(("boost" ,boost)
("fftwf" ,fftwf)
@@ -1575,6 +1585,42 @@ JACK for audio and ALSA sequencer for MIDI as multimedia infrastructures and
follows a traditional multi-track tape recorder control paradigm.")
(license license:gpl2+)))
+(define-public gxtuner
+ (package
+ (name "gxtuner")
+ (version "2.3")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/brummer10/gxtuner/"
+ "archive/v" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1abpxiydn4c9wssz6895hnad9ipkcy3rkgzbnanvwb46nm44x6if"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:make-flags
+ (list (string-append "PREFIX=" (assoc-ref %outputs "out"))
+ (string-append "INCLUDE_L_DIR="
+ (assoc-ref %build-inputs "zita-resampler")
+ "/include/"))
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (inputs
+ `(("gtk+" ,gtk+-2)
+ ("jack" ,jack-1)
+ ("fftwf" ,fftwf)
+ ("cairo" ,cairo)
+ ("zita-resampler" ,zita-resampler)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (home-page "https://github.com/brummer10/gxtuner")
+ (synopsis "Guitar tuner")
+ (description "GXtuner is a simple guitar tuner for JACK with an
+analogue-like user interface.")
+ (license license:gpl2+)))
+
(define-public pianobar
(package
(name "pianobar")
diff --git a/gnu/packages/ncdu.scm b/gnu/packages/ncdu.scm
index da4b587822..b2e2ae2d83 100644
--- a/gnu/packages/ncdu.scm
+++ b/gnu/packages/ncdu.scm
@@ -27,14 +27,14 @@
(define-public ncdu
(package
(name "ncdu")
- (version "1.11")
+ (version "1.12")
(source (origin
(method url-fetch)
- (uri (string-append "http://dev.yorhel.nl/download/ncdu-"
+ (uri (string-append "https://dev.yorhel.nl/download/ncdu-"
version ".tar.gz"))
(sha256
(base32
- "0yxv87hpal05p6nii6rlnai5a8958689l9vz020w4qvlwiragbnh"))))
+ "16j9fyw73y1lk05a35i4q9i66laklgsx41lz5rxfr8m28x3lw3l2"))))
(build-system gnu-build-system)
(inputs `(("ncurses" ,ncurses)))
(synopsis "Ncurses based disk usage analyzer")
@@ -44,6 +44,6 @@ to do with a simple SSH connection. ncdu aims to be fast, simple and easy to
use, and should be able to run in any minimal POSIX-like environment with
ncurses installed.")
(license (x11-style
- (string-append "http://g.blicky.net/ncdu.git/plain/COPYING?id=v"
+ (string-append "https://g.blicky.net/ncdu.git/plain/COPYING?id=v"
version)))
- (home-page "http://dev.yorhel.nl/ncdu")))
+ (home-page "https://dev.yorhel.nl/ncdu")))
diff --git a/gnu/packages/patches/clx-remove-demo.patch b/gnu/packages/patches/clx-remove-demo.patch
new file mode 100644
index 0000000000..c5fffea0d0
--- /dev/null
+++ b/gnu/packages/patches/clx-remove-demo.patch
@@ -0,0 +1,27 @@
+--- a/clx.asd 2016-02-16 00:06:48.161596976 -0500
++++ b/clx.asd 2016-02-16 00:06:54.793774658 -0500
+@@ -79,24 +79,6 @@
+ (:file "xtest")
+ (:file "screensaver")
+ (:file "xinerama")))
+- (:module demo
+- :default-component-class example-source-file
+- :components
+- ((:file "bezier")
+- ;; KLUDGE: this requires "bezier" for proper operation,
+- ;; but we don't declare that dependency here, because
+- ;; asdf doesn't load example files anyway.
+- (:file "beziertest")
+- (:file "clclock")
+- (:file "clipboard")
+- (:file "clx-demos")
+- (:file "gl-test")
+- ;; FIXME: compiling this generates 30-odd spurious code
+- ;; deletion notes. Find out why, and either fix or
+- ;; workaround the problem.
+- (:file "mandel")
+- (:file "menu")
+- (:file "zoid")))
+ (:module test
+ :default-component-class example-source-file
+ :components
diff --git a/gnu/packages/patches/hdf-eos5-build-shared.patch b/gnu/packages/patches/hdf-eos5-build-shared.patch
new file mode 100644
index 0000000000..f4ae5c73e3
--- /dev/null
+++ b/gnu/packages/patches/hdf-eos5-build-shared.patch
@@ -0,0 +1,31 @@
+Make shared library linking work.
+---
+ src/Makefile.in | 5 +----
+ 1 file changed, 1 insertion(+), 4 deletions(-)
+
+diff --git a/src/Makefile.in b/src/Makefile.in
+index 86880e5..24efffe 100644
+--- a/src/Makefile.in
++++ b/src/Makefile.in
+@@ -72,7 +72,7 @@ LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) \
+ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
+ $(AM_CFLAGS) $(CFLAGS) -DH5_USE_16_API
+ CCLD = $(CC)
+-LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
++LINK = HDF5_USE_SHLIB=yes $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+ $(AM_LDFLAGS) $(LDFLAGS) -o $@
+ SOURCES = $(libhe5_hdfeos_la_SOURCES)
+ DIST_SOURCES = $(libhe5_hdfeos_la_SOURCES)
+@@ -124,9 +124,6 @@ INSTALL_PROGRAM = @INSTALL_PROGRAM@
+ INSTALL_SCRIPT = @INSTALL_SCRIPT@
+ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+
+-# Set LDFLAGS to allow the HDF-EOS library to use extern variables from
+-# HDF5
+-LDFLAGS = -Wl,-single_module
+ LIBOBJS = @LIBOBJS@
+ LIBS = @LIBS@
+ LIBTOOL = @LIBTOOL@
+--
+2.10.0
+
diff --git a/gnu/packages/patches/hdf-eos5-fix-szip.patch b/gnu/packages/patches/hdf-eos5-fix-szip.patch
new file mode 100644
index 0000000000..799f542ef3
--- /dev/null
+++ b/gnu/packages/patches/hdf-eos5-fix-szip.patch
@@ -0,0 +1,30 @@
+Ill-placed #endif causes missing symbol errors when compiling without
+szip. Reported to upstream maintainer.
+---
+ src/EHapi.c | 3 +--
+ 1 file changed, 1 insertion(+), 2 deletions(-)
+
+diff --git a/src/EHapi.c b/src/EHapi.c
+index 46a9b5c..208f447 100755
+--- a/src/EHapi.c
++++ b/src/EHapi.c
+@@ -11379,6 +11379,7 @@ int HE5_szip_can_encode(void )
+ return(-1);
+ }
+
++#endif /* H5_HAVE_FILTER_SZIP */
+
+
+ /*----------------------------------------------------------------------------|
+@@ -11509,8 +11510,6 @@ HE5_EHHEisHE5(char *filename)
+ }
+ }
+
+-#endif /* H5_HAVE_FILTER_SZIP */
+-
+
+ #ifndef __cplusplus
+
+--
+2.10.0
+
diff --git a/gnu/packages/patches/hdf-eos5-fortrantests.patch b/gnu/packages/patches/hdf-eos5-fortrantests.patch
new file mode 100644
index 0000000000..7333056342
--- /dev/null
+++ b/gnu/packages/patches/hdf-eos5-fortrantests.patch
@@ -0,0 +1,156 @@
+Fix fortran line length/indentation issues in Fortran test programs.
+Reported to upstream maintainer.
+
+diff --git a/samples/he5_gd_writedataF_32.f b/samples/he5_gd_writedataF_32.f
+index 515edf9..9c86299 100755
+--- a/samples/he5_gd_writedataF_32.f
++++ b/samples/he5_gd_writedataF_32.f
+@@ -77,26 +77,26 @@ c ------------------------------
+
+ attr4 = "ABCDEFGH"
+ count(1) = 8
+- status = he5_gdwrattr(gdid,"GLOBAL_CHAR_ATTR",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_gdwrattr(gdid,"GLOBAL_CHAR_ATTR"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+ write(*,*) 'Status returned by he5_gdwrattr(): ',status
+
+ attr4 = "111"
+ count(1) = 3
+- status = he5_gdwrgattr(gdid,"GLOBAL_CHAR_ATTR_1",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_gdwrgattr(gdid,"GLOBAL_CHAR_ATTR_1"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+ write(*,*) 'Status returned by he5_gdwrgattr(): ',status
+
+ attr4 = "222222"
+ count(1) = 6
+- status = he5_ehwrglatt(gdfid,"GLOBAL_CHAR_ATTR_2",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_ehwrglatt(gdfid,"GLOBAL_CHAR_ATTR_2"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+ write(*,*) 'Status returned by he5_ehwrglatt(): ',status
+
+ attr5 = "abcdefgh111111111111"
+ count(1) = 20
+- status = he5_gdwrlattr(gdid,"Vegetation","LocalAttribute_0",
+- 1 HE5T_NATIVE_CHAR,count,attr5)
++ status = he5_gdwrlattr(gdid,"Vegetation"
++ & ,"LocalAttribute_0",HE5T_NATIVE_CHAR,count,attr5)
+ write(*,*) 'Status returned by he5_gdwrlattr(): ',status
+
+ endif
+diff --git a/samples/he5_gd_writedataF_64.f b/samples/he5_gd_writedataF_64.f
+index eff04f5..62a7398 100755
+--- a/samples/he5_gd_writedataF_64.f
++++ b/samples/he5_gd_writedataF_64.f
+@@ -77,26 +77,26 @@ c ------------------------------
+
+ attr4 = "ABCDEFGH"
+ count(1) = 8
+- status = he5_gdwrattr(gdid,"GLOBAL_CHAR_ATTR",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_gdwrattr(gdid,"GLOBAL_CHAR_ATTR"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+ write(*,*) 'Status returned by he5_gdwrattr(): ',status
+
+ attr4 = "111"
+ count(1) = 3
+- status = he5_gdwrgattr(gdid,"GLOBAL_CHAR_ATTR_1",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_gdwrgattr(gdid,"GLOBAL_CHAR_ATTR_1"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+ write(*,*) 'Status returned by he5_gdwrgattr(): ',status
+
+ attr4 = "222222"
+ count(1) = 6
+- status = he5_ehwrglatt(gdfid,"GLOBAL_CHAR_ATTR_2",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_ehwrglatt(gdfid,"GLOBAL_CHAR_ATTR_2"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+ write(*,*) 'Status returned by he5_ehwrglatt(): ',status
+
+ attr5 = "abcdefgh111111111111"
+ count(1) = 20
+- status = he5_gdwrlattr(gdid,"Vegetation","LocalAttribute_0",
+- 1 HE5T_NATIVE_CHAR,count,attr5)
++ status = he5_gdwrlattr(gdid,"Vegetation"
++ & ,"LocalAttribute_0",HE5T_NATIVE_CHAR,count,attr5)
+ write(*,*) 'Status returned by he5_gdwrlattr(): ',status
+
+ endif
+diff --git a/samples/he5_sw_writedataF_32.f b/samples/he5_sw_writedataF_32.f
+index 7abab9b..fedd49a 100755
+--- a/samples/he5_sw_writedataF_32.f
++++ b/samples/he5_sw_writedataF_32.f
+@@ -173,20 +173,21 @@ c Write Global Attribute
+ c ----------------------
+ attr4 = "ABCDEFGH"
+ count(1) = 8
+- status = he5_swwrattr(swid,"GLOBAL_CHAR_ATTR",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_swwrattr(swid,"GLOBAL_CHAR_ATTR"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+ write(*,*) 'Status returned by he5_swwrattr(): ',status
+
+ attr4 = "111"
+ count(1) = 3
+- status = he5_swwrgattr(swid,"GLOBAL_CHAR_ATTR_1",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_swwrgattr(swid,"GLOBAL_CHAR_ATTR_1"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+ write(*,*) 'Status returned by he5_swwrgattr(): ',status
+
+ attr4 = "222222"
+ count(1) = 6
+- status = he5_ehwrglatt(swfid,"GLOBAL_CHAR_ATTR_2",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_ehwrglatt(swfid
++ & ,"GLOBAL_CHAR_ATTR_2",HE5T_NATIVE_CHAR
++ & ,count,attr4)
+ write(*,*) 'Status returned by he5_ehwrglatt(): ',status
+
+ c Write Local Attribute
+diff --git a/samples/he5_sw_writedataF_64.f b/samples/he5_sw_writedataF_64.f
+index 79e34bd..e5d74cb 100755
+--- a/samples/he5_sw_writedataF_64.f
++++ b/samples/he5_sw_writedataF_64.f
+@@ -162,25 +162,27 @@ c Write Global Attribute
+ c ----------------------
+ attr4 = "ABCDEFGH"
+ count(1) = 8
+- status = he5_swwrattr(swid,"GLOBAL_CHAR_ATTR",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_swwrattr(swid,"GLOBAL_CHAR_ATTR"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+
+ attr4 = "111"
+ count(1) = 3
+- status = he5_swwrgattr(swid,"GLOBAL_CHAR_ATTR_1",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_swwrgattr(swid,"GLOBAL_CHAR_ATTR_1"
++ & ,HE5T_NATIVE_CHAR,count,attr4)
+
+ attr4 = "222222"
+ count(1) = 6
+- status = he5_ehwrglatt(swfid,"GLOBAL_CHAR_ATTR_2",HE5T_NATIVE_CHAR,
+- 1 count,attr4)
++ status = he5_ehwrglatt(swfid
++ & ,"GLOBAL_CHAR_ATTR_2",HE5T_NATIVE_CHAR
++ & ,count,attr4)
+
+ c Write Local Attribute
+ c ---------------------
+ attr5 = "abababababababababab"
+ count(1) = 20
+- status = he5_swwrlattr(swid,"Density","LocalAttribute_0",
+- 1 HE5T_NATIVE_CHAR,count,attr5)
++ status = he5_swwrlattr(swid,"Density"
++ & ,"LocalAttribute_0",HE5T_NATIVE_CHAR,count
++ & ,attr5)
+
+
+ endif
+--
+2.10.0
+
diff --git a/gnu/packages/patches/hdf-eos5-remove-gctp.patch b/gnu/packages/patches/hdf-eos5-remove-gctp.patch
new file mode 100644
index 0000000000..3b78357129
--- /dev/null
+++ b/gnu/packages/patches/hdf-eos5-remove-gctp.patch
@@ -0,0 +1,55 @@
+Don't build/install/use bundled gctp code/headers.
+
+* cproj.h, proj.h: part of GCTP, therefore already present.
+* HE5_config.h, tutils.h: used for library building and testing.
+
+diff --git a/Makefile.in b/Makefile.in
+index f160d0d..367b537 100644
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -206,7 +206,7 @@ LIBGCTP = $(top_builddir)/gctp/src/libGctp.la
+ @TESTDRIVERS_CONDITIONAL_TRUE@TESTDRIVERS = testdrivers
+ @INSTALL_INCLUDE_CONDITIONAL_FALSE@INCLUDE =
+ @INSTALL_INCLUDE_CONDITIONAL_TRUE@INCLUDE = include
+-SUBDIRS = gctp src $(INCLUDE) samples $(TESTDRIVERS)
++SUBDIRS = src $(INCLUDE) samples $(TESTDRIVERS)
+ all: all-recursive
+
+ .SUFFIXES:
+diff --git a/samples/Makefile.in b/samples/Makefile.in
+index 59331dd..64fda89 100644
+--- a/samples/Makefile.in
++++ b/samples/Makefile.in
+@@ -206,7 +206,6 @@ he5_gd_datainfo_SOURCES = he5_gd_datainfo.c
+ he5_gd_datainfo_OBJECTS = he5_gd_datainfo.$(OBJEXT)
+ he5_gd_datainfo_LDADD = $(LDADD)
+ am__DEPENDENCIES_1 = $(top_builddir)/src/libhe5_hdfeos.la
+-am__DEPENDENCIES_2 = $(top_builddir)/gctp/src/libGctp.la
+ he5_gd_datainfo_DEPENDENCIES = $(am__DEPENDENCIES_1) \
+ $(am__DEPENDENCIES_2)
+ he5_gd_defexternalfld_SOURCES = he5_gd_defexternalfld.c
+@@ -1093,7 +1092,7 @@ sharedstatedir = @sharedstatedir@
+ sysconfdir = @sysconfdir@
+ target_alias = @target_alias@
+ LIBHDFEOS5 = $(top_builddir)/src/libhe5_hdfeos.la
+-LIBGCTP = $(top_builddir)/gctp/src/libGctp.la
++LIBGCTP =
+
+ # Boilerplate definitions file
+
+diff --git a/include/Makefile.in b/include/Makefile.in
+index a572128..64dabb5 100644
+--- a/include/Makefile.in
++++ b/include/Makefile.in
+@@ -190,8 +190,7 @@ LIBGCTP = $(top_builddir)/gctp/src/libGctp.la
+ # Boilerplate include
+
+ # Headers to install
+-include_HEADERS = HE5_GctpFunc.h HE5_HdfEosDef.h HE5_config.h cproj.h ease.h \
+- isin.h proj.h tutils.h cfortHdf.h
++include_HEADERS = HE5_GctpFunc.h HE5_HdfEosDef.h ease.h isin.h cfortHdf.h
+
+ all: HE5_config.h
+ $(MAKE) $(AM_MAKEFLAGS) all-am
+--
+2.10.0
diff --git a/gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch b/gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch
deleted file mode 100644
index 57bc45f3c2..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch
+++ /dev/null
@@ -1,62 +0,0 @@
- changeset: 312039:4290826b078c
- user: Timothy Nikkel <tnikkel@gmail.com>
- Date: Fri May 13 06:09:38 2016 +0200
- summary: Bug 1261230. r=mats, a=ritu
-
-diff -r 45a59425b498 -r 4290826b078c layout/generic/nsSubDocumentFrame.cpp
---- a/layout/generic/nsSubDocumentFrame.cpp Tue May 10 14:12:20 2016 +0200
-+++ b/layout/generic/nsSubDocumentFrame.cpp Fri May 13 06:09:38 2016 +0200
-@@ -132,6 +132,7 @@
- nsCOMPtr<nsIDocument> oldContainerDoc;
- nsView* detachedViews =
- frameloader->GetDetachedSubdocView(getter_AddRefs(oldContainerDoc));
-+ frameloader->SetDetachedSubdocView(nullptr, nullptr);
- if (detachedViews) {
- if (oldContainerDoc == aContent->OwnerDoc()) {
- // Restore stashed presentation.
-@@ -142,7 +143,6 @@
- frameloader->Hide();
- }
- }
-- frameloader->SetDetachedSubdocView(nullptr, nullptr);
- }
-
- nsContentUtils::AddScriptRunner(new AsyncFrameInit(this));
-@@ -936,13 +936,16 @@
- if (!mPresShell->IsDestroying()) {
- mPresShell->FlushPendingNotifications(Flush_Frames);
- }
-+
-+ // Either the frame has been constructed by now, or it never will be,
-+ // either way we want to clear the stashed views.
-+ mFrameLoader->SetDetachedSubdocView(nullptr, nullptr);
-+
- nsSubDocumentFrame* frame = do_QueryFrame(mFrameElement->GetPrimaryFrame());
- if ((!frame && mHideViewerIfFrameless) ||
- mPresShell->IsDestroying()) {
- // Either the frame element has no nsIFrame or the presshell is being
-- // destroyed. Hide the nsFrameLoader, which destroys the presentation,
-- // and clear our references to the stashed presentation.
-- mFrameLoader->SetDetachedSubdocView(nullptr, nullptr);
-+ // destroyed. Hide the nsFrameLoader, which destroys the presentation.
- mFrameLoader->Hide();
- }
- return NS_OK;
-@@ -968,7 +971,7 @@
- // Detach the subdocument's views and stash them in the frame loader.
- // We can then reattach them if we're being reframed (for example if
- // the frame has been made position:fixed).
-- nsFrameLoader* frameloader = FrameLoader();
-+ RefPtr<nsFrameLoader> frameloader = FrameLoader();
- if (frameloader) {
- nsView* detachedViews = ::BeginSwapDocShellsForViews(mInnerView->GetFirstChild());
- frameloader->SetDetachedSubdocView(detachedViews, mContent->OwnerDoc());
-@@ -977,7 +980,7 @@
- // safely determine whether the frame is being reframed or destroyed.
- nsContentUtils::AddScriptRunner(
- new nsHideViewer(mContent,
-- mFrameLoader,
-+ frameloader,
- PresContext()->PresShell(),
- (mDidCreateDoc || mCallingShow)));
- }
diff --git a/gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch b/gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch
deleted file mode 100644
index 843e2eb244..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch
+++ /dev/null
@@ -1,29 +0,0 @@
- changeset: 312044:09418166fd77
- user: Jon Coppeard <jcoppeard@mozilla.com>
- Date: Wed May 11 10:14:45 2016 +0100
- summary: Bug 1264575 - Add missing pre-barrier in Ion r=jandem a=ritu
-
-diff -r 9cc65cca1f71 -r 09418166fd77 js/src/jit-test/tests/self-hosting/bug1264575.js
---- /dev/null Thu Jan 01 00:00:00 1970 +0000
-+++ b/js/src/jit-test/tests/self-hosting/bug1264575.js Wed May 11 10:14:45 2016 +0100
-@@ -0,0 +1,7 @@
-+function f(x, [y]) {}
-+f(0, []);
-+// jsfunfuzz-generated
-+let i = 0;
-+for (var z of [0, 0, 0]) {
-+ verifyprebarriers();
-+}
-diff -r 9cc65cca1f71 -r 09418166fd77 js/src/jit/MCallOptimize.cpp
---- a/js/src/jit/MCallOptimize.cpp Mon May 16 15:11:24 2016 -0400
-+++ b/js/src/jit/MCallOptimize.cpp Wed May 11 10:14:45 2016 +0100
-@@ -2263,7 +2263,8 @@
-
- callInfo.setImplicitlyUsedUnchecked();
-
-- MStoreFixedSlot* store = MStoreFixedSlot::New(alloc(), callInfo.getArg(0), slot, callInfo.getArg(2));
-+ MStoreFixedSlot* store =
-+ MStoreFixedSlot::NewBarriered(alloc(), callInfo.getArg(0), slot, callInfo.getArg(2));
- current->add(store);
- current->push(store);
-
diff --git a/gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch b/gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch
deleted file mode 100644
index fab003158c..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch
+++ /dev/null
@@ -1,18 +0,0 @@
- changeset: 312051:9ec3d076fbee
- parents: 312049:e0a272d5e162
- user: Eric Faust <efaustbmo@gmail.com>
- Date: Wed May 04 15:54:43 2016 -0700
- summary: Bug 1269729 - Handle another OOM case on ARM. (r=jolesen) a=ritu
-
-diff -r e0a272d5e162 -r 9ec3d076fbee js/src/jit/arm/CodeGenerator-arm.cpp
---- a/js/src/jit/arm/CodeGenerator-arm.cpp Tue May 17 08:26:37 2016 -0400
-+++ b/js/src/jit/arm/CodeGenerator-arm.cpp Wed May 04 15:54:43 2016 -0700
-@@ -1116,7 +1116,7 @@
- for (int32_t i = 0; i < cases; i++) {
- CodeLabel cl;
- masm.writeCodePointer(cl.dest());
-- ool->addCodeLabel(cl);
-+ masm.propagateOOM(ool->addCodeLabel(cl));
- }
- addOutOfLineCode(ool, mir);
- }
diff --git a/gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch b/gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch
deleted file mode 100644
index 0973203e0f..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch
+++ /dev/null
@@ -1,61 +0,0 @@
- changeset: 312055:b74f1ab939d2
- user: Olli Pettay <Olli.Pettay@helsinki.fi>
- Date: Mon May 16 21:42:24 2016 +0300
- summary: Bug 1273202, make sure to not keep objects alive too long because of some useless event dispatching, r=jwatt a=ritu
-
-diff -r 072992bf176d -r b74f1ab939d2 dom/html/HTMLInputElement.cpp
---- a/dom/html/HTMLInputElement.cpp Sun May 15 17:03:06 2016 +0300
-+++ b/dom/html/HTMLInputElement.cpp Mon May 16 21:42:24 2016 +0300
-@@ -1168,7 +1168,7 @@
- mFileList->Disconnect();
- }
- if (mNumberControlSpinnerIsSpinning) {
-- StopNumberControlSpinnerSpin();
-+ StopNumberControlSpinnerSpin(eDisallowDispatchingEvents);
- }
- DestroyImageLoadingContent();
- FreeData();
-@@ -3721,7 +3721,7 @@
- }
-
- void
--HTMLInputElement::StopNumberControlSpinnerSpin()
-+HTMLInputElement::StopNumberControlSpinnerSpin(SpinnerStopState aState)
- {
- if (mNumberControlSpinnerIsSpinning) {
- if (nsIPresShell::GetCapturingContent() == this) {
-@@ -3732,11 +3732,16 @@
-
- mNumberControlSpinnerIsSpinning = false;
-
-- FireChangeEventIfNeeded();
-+ if (aState == eAllowDispatchingEvents) {
-+ FireChangeEventIfNeeded();
-+ }
-
- nsNumberControlFrame* numberControlFrame =
- do_QueryFrame(GetPrimaryFrame());
- if (numberControlFrame) {
-+ MOZ_ASSERT(aState == eAllowDispatchingEvents,
-+ "Shouldn't have primary frame for the element when we're not "
-+ "allowed to dispatch events to it anymore.");
- numberControlFrame->SpinnerStateChanged();
- }
- }
-diff -r 072992bf176d -r b74f1ab939d2 dom/html/HTMLInputElement.h
---- a/dom/html/HTMLInputElement.h Sun May 15 17:03:06 2016 +0300
-+++ b/dom/html/HTMLInputElement.h Mon May 16 21:42:24 2016 +0300
-@@ -721,7 +721,12 @@
- HTMLInputElement* GetOwnerNumberControl();
-
- void StartNumberControlSpinnerSpin();
-- void StopNumberControlSpinnerSpin();
-+ enum SpinnerStopState {
-+ eAllowDispatchingEvents,
-+ eDisallowDispatchingEvents
-+ };
-+ void StopNumberControlSpinnerSpin(SpinnerStopState aState =
-+ eAllowDispatchingEvents);
- void StepNumberControlForUserEvent(int32_t aDirection);
-
- /**
diff --git a/gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch b/gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch
deleted file mode 100644
index cd98d0b28b..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch
+++ /dev/null
@@ -1,266 +0,0 @@
- changeset: 312063:88bea96c802a
- user: Andrea Marchesini <amarchesini@mozilla.com>
- Date: Tue May 10 10:52:19 2016 +0200
- summary: Bug 1267130 - Improve the URL segment calculation, r=valentin a=ritu
-
-diff -r 28dcecced055 -r 88bea96c802a netwerk/base/nsStandardURL.cpp
---- a/netwerk/base/nsStandardURL.cpp Wed May 18 11:55:29 2016 +1200
-+++ b/netwerk/base/nsStandardURL.cpp Tue May 10 10:52:19 2016 +0200
-@@ -475,19 +475,28 @@
- }
-
- uint32_t
--nsStandardURL::AppendSegmentToBuf(char *buf, uint32_t i, const char *str, URLSegment &seg, const nsCString *escapedStr, bool useEscaped)
-+nsStandardURL::AppendSegmentToBuf(char *buf, uint32_t i, const char *str,
-+ const URLSegment &segInput, URLSegment &segOutput,
-+ const nsCString *escapedStr,
-+ bool useEscaped, int32_t *diff)
- {
-- if (seg.mLen > 0) {
-+ MOZ_ASSERT(segInput.mLen == segOutput.mLen);
-+
-+ if (diff) *diff = 0;
-+
-+ if (segInput.mLen > 0) {
- if (useEscaped) {
-- seg.mLen = escapedStr->Length();
-- memcpy(buf + i, escapedStr->get(), seg.mLen);
-+ MOZ_ASSERT(diff);
-+ segOutput.mLen = escapedStr->Length();
-+ *diff = segOutput.mLen - segInput.mLen;
-+ memcpy(buf + i, escapedStr->get(), segOutput.mLen);
-+ } else {
-+ memcpy(buf + i, str + segInput.mPos, segInput.mLen);
- }
-- else
-- memcpy(buf + i, str + seg.mPos, seg.mLen);
-- seg.mPos = i;
-- i += seg.mLen;
-+ segOutput.mPos = i;
-+ i += segOutput.mLen;
- } else {
-- seg.mPos = i;
-+ segOutput.mPos = i;
- }
- return i;
- }
-@@ -598,6 +607,20 @@
- }
- }
-
-+ // We must take a copy of every single segment because they are pointing to
-+ // the |spec| while we are changing their value, in case we must use
-+ // encoded strings.
-+ URLSegment username(mUsername);
-+ URLSegment password(mPassword);
-+ URLSegment host(mHost);
-+ URLSegment path(mPath);
-+ URLSegment filepath(mFilepath);
-+ URLSegment directory(mDirectory);
-+ URLSegment basename(mBasename);
-+ URLSegment extension(mExtension);
-+ URLSegment query(mQuery);
-+ URLSegment ref(mRef);
-+
- //
- // generate the normalized URL string
- //
-@@ -607,9 +630,10 @@
- char *buf;
- mSpec.BeginWriting(buf);
- uint32_t i = 0;
-+ int32_t diff = 0;
-
- if (mScheme.mLen > 0) {
-- i = AppendSegmentToBuf(buf, i, spec, mScheme);
-+ i = AppendSegmentToBuf(buf, i, spec, mScheme, mScheme);
- net_ToLowerCase(buf + mScheme.mPos, mScheme.mLen);
- i = AppendToBuf(buf, i, "://", 3);
- }
-@@ -619,15 +643,22 @@
-
- // append authority
- if (mUsername.mLen > 0) {
-- i = AppendSegmentToBuf(buf, i, spec, mUsername, &encUsername, useEncUsername);
-- if (mPassword.mLen >= 0) {
-+ i = AppendSegmentToBuf(buf, i, spec, username, mUsername,
-+ &encUsername, useEncUsername, &diff);
-+ ShiftFromPassword(diff);
-+ if (password.mLen >= 0) {
- buf[i++] = ':';
-- i = AppendSegmentToBuf(buf, i, spec, mPassword, &encPassword, useEncPassword);
-+ i = AppendSegmentToBuf(buf, i, spec, password, mPassword,
-+ &encPassword, useEncPassword, &diff);
-+ ShiftFromHost(diff);
- }
- buf[i++] = '@';
- }
-- if (mHost.mLen > 0) {
-- i = AppendSegmentToBuf(buf, i, spec, mHost, &encHost, useEncHost);
-+ if (host.mLen > 0) {
-+ i = AppendSegmentToBuf(buf, i, spec, host, mHost, &encHost, useEncHost,
-+ &diff);
-+ ShiftFromPath(diff);
-+
- net_ToLowerCase(buf + mHost.mPos, mHost.mLen);
- MOZ_ASSERT(mPort >= -1, "Invalid negative mPort");
- if (mPort != -1 && mPort != mDefaultPort) {
-@@ -652,21 +683,23 @@
- }
- else {
- uint32_t leadingSlash = 0;
-- if (spec[mPath.mPos] != '/') {
-+ if (spec[path.mPos] != '/') {
- LOG(("adding leading slash to path\n"));
- leadingSlash = 1;
- buf[i++] = '/';
- // basename must exist, even if empty (bugs 113508, 429347)
- if (mBasename.mLen == -1) {
-- mBasename.mPos = i;
-- mBasename.mLen = 0;
-+ mBasename.mPos = basename.mPos = i;
-+ mBasename.mLen = basename.mLen = 0;
- }
- }
-
- // record corrected (file)path starting position
- mPath.mPos = mFilepath.mPos = i - leadingSlash;
-
-- i = AppendSegmentToBuf(buf, i, spec, mDirectory, &encDirectory, useEncDirectory);
-+ i = AppendSegmentToBuf(buf, i, spec, directory, mDirectory,
-+ &encDirectory, useEncDirectory, &diff);
-+ ShiftFromBasename(diff);
-
- // the directory must end with a '/'
- if (buf[i-1] != '/') {
-@@ -674,7 +707,9 @@
- mDirectory.mLen++;
- }
-
-- i = AppendSegmentToBuf(buf, i, spec, mBasename, &encBasename, useEncBasename);
-+ i = AppendSegmentToBuf(buf, i, spec, basename, mBasename,
-+ &encBasename, useEncBasename, &diff);
-+ ShiftFromExtension(diff);
-
- // make corrections to directory segment if leadingSlash
- if (leadingSlash) {
-@@ -687,18 +722,24 @@
-
- if (mExtension.mLen >= 0) {
- buf[i++] = '.';
-- i = AppendSegmentToBuf(buf, i, spec, mExtension, &encExtension, useEncExtension);
-+ i = AppendSegmentToBuf(buf, i, spec, extension, mExtension,
-+ &encExtension, useEncExtension, &diff);
-+ ShiftFromQuery(diff);
- }
- // calculate corrected filepath length
- mFilepath.mLen = i - mFilepath.mPos;
-
- if (mQuery.mLen >= 0) {
- buf[i++] = '?';
-- i = AppendSegmentToBuf(buf, i, spec, mQuery, &encQuery, useEncQuery);
-+ i = AppendSegmentToBuf(buf, i, spec, query, mQuery,
-+ &encQuery, useEncQuery,
-+ &diff);
-+ ShiftFromRef(diff);
- }
- if (mRef.mLen >= 0) {
- buf[i++] = '#';
-- i = AppendSegmentToBuf(buf, i, spec, mRef, &encRef, useEncRef);
-+ i = AppendSegmentToBuf(buf, i, spec, ref, mRef, &encRef, useEncRef,
-+ &diff);
- }
- // calculate corrected path length
- mPath.mLen = i - mPath.mPos;
-@@ -953,6 +994,39 @@
- #undef GOT_PREF
- }
-
-+#define SHIFT_FROM(name, what) \
-+void \
-+nsStandardURL::name(int32_t diff) \
-+{ \
-+ if (!diff) return; \
-+ if (what.mLen >= 0) { \
-+ CheckedInt<int32_t> pos = what.mPos; \
-+ pos += diff; \
-+ MOZ_ASSERT(pos.isValid()); \
-+ what.mPos = pos.value(); \
-+ }
-+
-+#define SHIFT_FROM_NEXT(name, what, next) \
-+ SHIFT_FROM(name, what) \
-+ next(diff); \
-+}
-+
-+#define SHIFT_FROM_LAST(name, what) \
-+ SHIFT_FROM(name, what) \
-+}
-+
-+SHIFT_FROM_NEXT(ShiftFromAuthority, mAuthority, ShiftFromUsername)
-+SHIFT_FROM_NEXT(ShiftFromUsername, mUsername, ShiftFromPassword)
-+SHIFT_FROM_NEXT(ShiftFromPassword, mPassword, ShiftFromHost)
-+SHIFT_FROM_NEXT(ShiftFromHost, mHost, ShiftFromPath)
-+SHIFT_FROM_NEXT(ShiftFromPath, mPath, ShiftFromFilepath)
-+SHIFT_FROM_NEXT(ShiftFromFilepath, mFilepath, ShiftFromDirectory)
-+SHIFT_FROM_NEXT(ShiftFromDirectory, mDirectory, ShiftFromBasename)
-+SHIFT_FROM_NEXT(ShiftFromBasename, mBasename, ShiftFromExtension)
-+SHIFT_FROM_NEXT(ShiftFromExtension, mExtension, ShiftFromQuery)
-+SHIFT_FROM_NEXT(ShiftFromQuery, mQuery, ShiftFromRef)
-+SHIFT_FROM_LAST(ShiftFromRef, mRef)
-+
- //----------------------------------------------------------------------------
- // nsStandardURL::nsISupports
- //----------------------------------------------------------------------------
-diff -r 28dcecced055 -r 88bea96c802a netwerk/base/nsStandardURL.h
---- a/netwerk/base/nsStandardURL.h Wed May 18 11:55:29 2016 +1200
-+++ b/netwerk/base/nsStandardURL.h Tue May 10 10:52:19 2016 +0200
-@@ -77,6 +77,7 @@
-
- URLSegment() : mPos(0), mLen(-1) {}
- URLSegment(uint32_t pos, int32_t len) : mPos(pos), mLen(len) {}
-+ URLSegment(const URLSegment& aCopy) : mPos(aCopy.mPos), mLen(aCopy.mLen) {}
- void Reset() { mPos = 0; mLen = -1; }
- // Merge another segment following this one to it if they're contiguous
- // Assumes we have something like "foo;bar" where this object is 'foo' and right
-@@ -177,7 +178,10 @@
- bool NormalizeIDN(const nsCSubstring &host, nsCString &result);
- void CoalescePath(netCoalesceFlags coalesceFlag, char *path);
-
-- uint32_t AppendSegmentToBuf(char *, uint32_t, const char *, URLSegment &, const nsCString *esc=nullptr, bool useEsc = false);
-+ uint32_t AppendSegmentToBuf(char *, uint32_t, const char *,
-+ const URLSegment &input, URLSegment &output,
-+ const nsCString *esc=nullptr,
-+ bool useEsc = false, int32_t* diff = nullptr);
- uint32_t AppendToBuf(char *, uint32_t, const char *, uint32_t);
-
- nsresult BuildNormalizedSpec(const char *spec);
-@@ -216,17 +220,17 @@
- const nsDependentCSubstring Ref() { return Segment(mRef); }
-
- // shift the URLSegments to the right by diff
-- void ShiftFromAuthority(int32_t diff) { mAuthority.mPos += diff; ShiftFromUsername(diff); }
-- void ShiftFromUsername(int32_t diff) { mUsername.mPos += diff; ShiftFromPassword(diff); }
-- void ShiftFromPassword(int32_t diff) { mPassword.mPos += diff; ShiftFromHost(diff); }
-- void ShiftFromHost(int32_t diff) { mHost.mPos += diff; ShiftFromPath(diff); }
-- void ShiftFromPath(int32_t diff) { mPath.mPos += diff; ShiftFromFilepath(diff); }
-- void ShiftFromFilepath(int32_t diff) { mFilepath.mPos += diff; ShiftFromDirectory(diff); }
-- void ShiftFromDirectory(int32_t diff) { mDirectory.mPos += diff; ShiftFromBasename(diff); }
-- void ShiftFromBasename(int32_t diff) { mBasename.mPos += diff; ShiftFromExtension(diff); }
-- void ShiftFromExtension(int32_t diff) { mExtension.mPos += diff; ShiftFromQuery(diff); }
-- void ShiftFromQuery(int32_t diff) { mQuery.mPos += diff; ShiftFromRef(diff); }
-- void ShiftFromRef(int32_t diff) { mRef.mPos += diff; }
-+ void ShiftFromAuthority(int32_t diff);
-+ void ShiftFromUsername(int32_t diff);
-+ void ShiftFromPassword(int32_t diff);
-+ void ShiftFromHost(int32_t diff);
-+ void ShiftFromPath(int32_t diff);
-+ void ShiftFromFilepath(int32_t diff);
-+ void ShiftFromDirectory(int32_t diff);
-+ void ShiftFromBasename(int32_t diff);
-+ void ShiftFromExtension(int32_t diff);
-+ void ShiftFromQuery(int32_t diff);
-+ void ShiftFromRef(int32_t diff);
-
- // fastload helper functions
- nsresult ReadSegment(nsIBinaryInputStream *, URLSegment &);
diff --git a/gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch b/gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch
deleted file mode 100644
index 143b02fa58..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch
+++ /dev/null
@@ -1,17 +0,0 @@
- changeset: 312067:380ddd689680
- user: Timothy Nikkel <tnikkel@gmail.com>
- Date: Tue May 10 22:58:26 2016 -0500
- summary: Bug 1261752. Part 1. r=mats a=ritu
-
-diff -r 02df988a56ae -r 380ddd689680 view/nsViewManager.cpp
---- a/view/nsViewManager.cpp Thu May 26 10:06:15 2016 -0700
-+++ b/view/nsViewManager.cpp Tue May 10 22:58:26 2016 -0500
-@@ -416,7 +416,7 @@
- if (aWidget->NeedsPaint()) {
- // If an ancestor widget was hidden and then shown, we could
- // have a delayed resize to handle.
-- for (nsViewManager *vm = this; vm;
-+ for (RefPtr<nsViewManager> vm = this; vm;
- vm = vm->mRootView->GetParent()
- ? vm->mRootView->GetParent()->GetViewManager()
- : nullptr) {
diff --git a/gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch b/gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch
deleted file mode 100644
index 23c509d6c1..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch
+++ /dev/null
@@ -1,33 +0,0 @@
- changeset: 312068:73cc9a2d8fc1
- user: Timothy Nikkel <tnikkel@gmail.com>
- Date: Tue May 10 22:58:47 2016 -0500
- summary: Bug 1261752. Part 2. r=mats a=ritu
-
-diff -r 380ddd689680 -r 73cc9a2d8fc1 view/nsViewManager.cpp
---- a/view/nsViewManager.cpp Tue May 10 22:58:26 2016 -0500
-+++ b/view/nsViewManager.cpp Tue May 10 22:58:47 2016 -0500
-@@ -372,7 +372,7 @@
- }
- }
- if (rootShell->GetViewManager() != this) {
-- return; // 'this' might have been destroyed
-+ return; // presentation might have been torn down
- }
- if (aFlushDirtyRegion) {
- nsAutoScriptBlocker scriptBlocker;
-@@ -1069,6 +1069,7 @@
- if (mPresShell) {
- mPresShell->GetPresContext()->RefreshDriver()->RevokeViewManagerFlush();
-
-+ RefPtr<nsViewManager> strongThis(this);
- CallWillPaintOnObservers();
-
- ProcessPendingUpdatesForView(mRootView, true);
-@@ -1085,6 +1086,7 @@
-
- if (mHasPendingWidgetGeometryChanges) {
- mHasPendingWidgetGeometryChanges = false;
-+ RefPtr<nsViewManager> strongThis(this);
- ProcessPendingUpdatesForView(mRootView, false);
- }
- }
diff --git a/gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch b/gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch
deleted file mode 100644
index ee5e54e805..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch
+++ /dev/null
@@ -1,267 +0,0 @@
- changeset: 312069:3c2bd9158ad3
- user: Timothy Nikkel <tnikkel@gmail.com>
- Date: Tue May 10 22:58:47 2016 -0500
- summary: Bug 1261752. Part 3. r=mats a=ritu
-
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 layout/forms/nsComboboxControlFrame.cpp
---- a/layout/forms/nsComboboxControlFrame.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/layout/forms/nsComboboxControlFrame.cpp Tue May 10 22:58:47 2016 -0500
-@@ -1417,7 +1417,11 @@
- // The popup's visibility doesn't update until the minimize animation has
- // finished, so call UpdateWidgetGeometry to update it right away.
- nsViewManager* viewManager = mDropdownFrame->GetView()->GetViewManager();
-- viewManager->UpdateWidgetGeometry();
-+ viewManager->UpdateWidgetGeometry(); // might destroy us
-+ }
-+
-+ if (!weakFrame.IsAlive()) {
-+ return consume;
- }
-
- return consume;
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 view/nsViewManager.cpp
---- a/view/nsViewManager.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/view/nsViewManager.cpp Tue May 10 22:58:47 2016 -0500
-@@ -670,15 +670,16 @@
-
- void nsViewManager::WillPaintWindow(nsIWidget* aWidget)
- {
-- if (aWidget) {
-- nsView* view = nsView::GetViewFor(aWidget);
-- LayerManager *manager = aWidget->GetLayerManager();
-+ RefPtr<nsIWidget> widget(aWidget);
-+ if (widget) {
-+ nsView* view = nsView::GetViewFor(widget);
-+ LayerManager* manager = widget->GetLayerManager();
- if (view &&
- (view->ForcedRepaint() || !manager->NeedsWidgetInvalidation())) {
- ProcessPendingUpdates();
- // Re-get the view pointer here since the ProcessPendingUpdates might have
- // destroyed it during CallWillPaintOnObservers.
-- view = nsView::GetViewFor(aWidget);
-+ view = nsView::GetViewFor(widget);
- if (view) {
- view->SetForcedRepaint(false);
- }
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 widget/PuppetWidget.cpp
---- a/widget/PuppetWidget.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/widget/PuppetWidget.cpp Tue May 10 22:58:47 2016 -0500
-@@ -823,6 +823,8 @@
- mDirtyRegion.SetEmpty();
- mPaintTask.Revoke();
-
-+ RefPtr<PuppetWidget> strongThis(this);
-+
- mAttachedWidgetListener->WillPaintWindow(this);
-
- if (mAttachedWidgetListener) {
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 widget/cocoa/nsChildView.mm
---- a/widget/cocoa/nsChildView.mm Tue May 10 22:58:47 2016 -0500
-+++ b/widget/cocoa/nsChildView.mm Tue May 10 22:58:47 2016 -0500
-@@ -3716,6 +3716,8 @@
-
- - (void)viewWillDraw
- {
-+ nsAutoRetainCocoaObject kungFuDeathGrip(self);
-+
- if (mGeckoChild) {
- // The OS normally *will* draw our NSWindow, no matter what we do here.
- // But Gecko can delete our parent widget(s) (along with mGeckoChild)
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 widget/gonk/nsWindow.cpp
---- a/widget/gonk/nsWindow.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/widget/gonk/nsWindow.cpp Tue May 10 22:58:47 2016 -0500
-@@ -196,7 +196,7 @@
- return;
- }
-
-- nsWindow *targetWindow = (nsWindow *)sTopWindows[0];
-+ RefPtr<nsWindow> targetWindow = (nsWindow *)sTopWindows[0];
- while (targetWindow->GetLastChild())
- targetWindow = (nsWindow *)targetWindow->GetLastChild();
-
-@@ -205,15 +205,15 @@
- listener->WillPaintWindow(targetWindow);
- }
-
-- LayerManager* lm = targetWindow->GetLayerManager();
-- if (mozilla::layers::LayersBackend::LAYERS_CLIENT == lm->GetBackendType()) {
-- // No need to do anything, the compositor will handle drawing
-- } else {
-- NS_RUNTIMEABORT("Unexpected layer manager type");
-- }
--
- listener = targetWindow->GetWidgetListener();
- if (listener) {
-+ LayerManager* lm = targetWindow->GetLayerManager();
-+ if (mozilla::layers::LayersBackend::LAYERS_CLIENT == lm->GetBackendType()) {
-+ // No need to do anything, the compositor will handle drawing
-+ } else {
-+ NS_RUNTIMEABORT("Unexpected layer manager type");
-+ }
-+
- listener->DidPaintWindow();
- }
- }
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 widget/gtk/nsWindow.cpp
---- a/widget/gtk/nsWindow.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/widget/gtk/nsWindow.cpp Tue May 10 22:58:47 2016 -0500
-@@ -469,6 +469,12 @@
- }
- }
-
-+nsIWidgetListener*
-+nsWindow::GetListener()
-+{
-+ return mAttachedWidgetListener ? mAttachedWidgetListener : mWidgetListener;
-+}
-+
- nsresult
- nsWindow::DispatchEvent(WidgetGUIEvent* aEvent, nsEventStatus& aStatus)
- {
-@@ -481,8 +487,7 @@
- aEvent->refPoint.y = GdkCoordToDevicePixels(aEvent->refPoint.y);
-
- aStatus = nsEventStatus_eIgnore;
-- nsIWidgetListener* listener =
-- mAttachedWidgetListener ? mAttachedWidgetListener : mWidgetListener;
-+ nsIWidgetListener* listener = GetListener();
- if (listener) {
- aStatus = listener->HandleEvent(aEvent, mUseAttachedEvents);
- }
-@@ -2119,8 +2124,7 @@
- if (!mGdkWindow || mIsFullyObscured || !mHasMappedToplevel)
- return FALSE;
-
-- nsIWidgetListener *listener =
-- mAttachedWidgetListener ? mAttachedWidgetListener : mWidgetListener;
-+ nsIWidgetListener *listener = GetListener();
- if (!listener)
- return FALSE;
-
-@@ -2149,6 +2153,8 @@
- clientLayers->SendInvalidRegion(region);
- }
-
-+ RefPtr<nsWindow> strongThis(this);
-+
- // Dispatch WillPaintWindow notification to allow scripts etc. to run
- // before we paint
- {
-@@ -2161,8 +2167,7 @@
-
- // Re-get the listener since the will paint notification might have
- // killed it.
-- listener =
-- mAttachedWidgetListener ? mAttachedWidgetListener : mWidgetListener;
-+ listener = GetListener();
- if (!listener)
- return FALSE;
- }
-@@ -2223,6 +2228,13 @@
- // If this widget uses OMTC...
- if (GetLayerManager()->GetBackendType() == LayersBackend::LAYERS_CLIENT) {
- listener->PaintWindow(this, region);
-+
-+ // Re-get the listener since the will paint notification might have
-+ // killed it.
-+ listener = GetListener();
-+ if (!listener)
-+ return TRUE;
-+
- listener->DidPaintWindow();
- return TRUE;
- }
-@@ -2307,6 +2319,13 @@
- if (GetLayerManager()->GetBackendType() == LayersBackend::LAYERS_BASIC) {
- AutoLayerManagerSetup setupLayerManager(this, ctx, layerBuffering);
- painted = listener->PaintWindow(this, region);
-+
-+ // Re-get the listener since the will paint notification might have
-+ // killed it.
-+ listener = GetListener();
-+ if (!listener)
-+ return TRUE;
-+
- }
- }
-
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 widget/gtk/nsWindow.h
---- a/widget/gtk/nsWindow.h Tue May 10 22:58:47 2016 -0500
-+++ b/widget/gtk/nsWindow.h Tue May 10 22:58:47 2016 -0500
-@@ -359,6 +359,7 @@
- GdkWindow** aWindow, gint* aButton,
- gint* aRootX, gint* aRootY);
- void ClearCachedResources();
-+ nsIWidgetListener* GetListener();
-
- GtkWidget *mShell;
- MozContainer *mContainer;
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 widget/qt/nsWindow.cpp
---- a/widget/qt/nsWindow.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/widget/qt/nsWindow.cpp Tue May 10 22:58:47 2016 -0500
-@@ -857,18 +857,28 @@
-
- // EVENTS
-
-+nsIWidgetListener*
-+nsWindow::GetPaintListener()
-+{
-+ return mAttachedWidgetListener ? mAttachedWidgetListener : mWidgetListener;
-+}
-+
- void
- nsWindow::OnPaint()
- {
- LOGDRAW(("nsWindow::%s [%p]\n", __FUNCTION__, (void *)this));
-- nsIWidgetListener* listener =
-- mAttachedWidgetListener ? mAttachedWidgetListener : mWidgetListener;
-+ nsIWidgetListener* listener = GetPaintListener();
- if (!listener) {
- return;
- }
-
- listener->WillPaintWindow(this);
-
-+ nsIWidgetListener* listener = GetPaintListener();
-+ if (!listener) {
-+ return;
-+ }
-+
- switch (GetLayerManager()->GetBackendType()) {
- case mozilla::layers::LayersBackend::LAYERS_CLIENT: {
- nsIntRegion region(nsIntRect(0, 0, mWidget->width(), mWidget->height()));
-@@ -879,6 +889,11 @@
- NS_ERROR("Invalid layer manager");
- }
-
-+ nsIWidgetListener* listener = GetPaintListener();
-+ if (!listener) {
-+ return;
-+ }
-+
- listener->DidPaintWindow();
- }
-
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 widget/qt/nsWindow.h
---- a/widget/qt/nsWindow.h Tue May 10 22:58:47 2016 -0500
-+++ b/widget/qt/nsWindow.h Tue May 10 22:58:47 2016 -0500
-@@ -254,6 +254,7 @@
- bool needDispatch;
- } MozCachedMoveEvent;
-
-+ nsIWidgetListener* GetPaintListener();
- bool CheckForRollup(double aMouseX, double aMouseY, bool aIsWheel);
- void* SetupPluginPort(void);
- nsresult SetWindowIconList(const nsTArray<nsCString> &aIconList);
-diff -r 73cc9a2d8fc1 -r 3c2bd9158ad3 widget/windows/nsWindowGfx.cpp
---- a/widget/windows/nsWindowGfx.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/widget/windows/nsWindowGfx.cpp Tue May 10 22:58:47 2016 -0500
-@@ -298,6 +298,8 @@
- clientLayerManager->SendInvalidRegion(region);
- }
-
-+ RefPtr<nsWindow> strongThis(this);
-+
- nsIWidgetListener* listener = GetPaintListener();
- if (listener) {
- listener->WillPaintWindow(this);
diff --git a/gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch b/gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch
deleted file mode 100644
index a72698cc0b..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch
+++ /dev/null
@@ -1,188 +0,0 @@
- changeset: 312075:ee870911fabb
- user: Timothy Nikkel <tnikkel@gmail.com>
- Date: Wed May 04 16:12:48 2016 -0500
- summary: Bug 1265577. r=mats, a=lizzard
-
-diff -r 751208d22b91 -r ee870911fabb dom/base/nsFrameLoader.cpp
---- a/dom/base/nsFrameLoader.cpp Thu May 26 17:07:49 2016 -0400
-+++ b/dom/base/nsFrameLoader.cpp Wed May 04 16:12:48 2016 -0500
-@@ -155,7 +155,7 @@
- nsFrameLoader::nsFrameLoader(Element* aOwner, bool aNetworkCreated)
- : mOwnerContent(aOwner)
- , mAppIdSentToPermissionManager(nsIScriptSecurityManager::NO_APP_ID)
-- , mDetachedSubdocViews(nullptr)
-+ , mDetachedSubdocFrame(nullptr)
- , mIsPrerendered(false)
- , mDepthTooGreat(false)
- , mIsTopLevelContent(false)
-@@ -2507,18 +2507,18 @@
- }
-
- void
--nsFrameLoader::SetDetachedSubdocView(nsView* aDetachedViews,
-- nsIDocument* aContainerDoc)
-+nsFrameLoader::SetDetachedSubdocFrame(nsIFrame* aDetachedFrame,
-+ nsIDocument* aContainerDoc)
- {
-- mDetachedSubdocViews = aDetachedViews;
-+ mDetachedSubdocFrame = aDetachedFrame;
- mContainerDocWhileDetached = aContainerDoc;
- }
-
--nsView*
--nsFrameLoader::GetDetachedSubdocView(nsIDocument** aContainerDoc) const
-+nsIFrame*
-+nsFrameLoader::GetDetachedSubdocFrame(nsIDocument** aContainerDoc) const
- {
- NS_IF_ADDREF(*aContainerDoc = mContainerDocWhileDetached);
-- return mDetachedSubdocViews;
-+ return mDetachedSubdocFrame.GetFrame();
- }
-
- void
-diff -r 751208d22b91 -r ee870911fabb dom/base/nsFrameLoader.h
---- a/dom/base/nsFrameLoader.h Thu May 26 17:07:49 2016 -0400
-+++ b/dom/base/nsFrameLoader.h Wed May 04 16:12:48 2016 -0500
-@@ -23,6 +23,7 @@
- #include "mozilla/Attributes.h"
- #include "FrameMetrics.h"
- #include "nsStubMutationObserver.h"
-+#include "nsIFrame.h"
-
- class nsIURI;
- class nsSubDocumentFrame;
-@@ -197,23 +198,23 @@
- void SetRemoteBrowser(nsITabParent* aTabParent);
-
- /**
-- * Stashes a detached view on the frame loader. We do this when we're
-+ * Stashes a detached nsIFrame on the frame loader. We do this when we're
- * destroying the nsSubDocumentFrame. If the nsSubdocumentFrame is
-- * being reframed we'll restore the detached view when it's recreated,
-+ * being reframed we'll restore the detached nsIFrame when it's recreated,
- * otherwise we'll discard the old presentation and set the detached
-- * subdoc view to null. aContainerDoc is the document containing the
-+ * subdoc nsIFrame to null. aContainerDoc is the document containing the
- * the subdoc frame. This enables us to detect when the containing
- * document has changed during reframe, so we can discard the presentation
- * in that case.
- */
-- void SetDetachedSubdocView(nsView* aDetachedView,
-- nsIDocument* aContainerDoc);
-+ void SetDetachedSubdocFrame(nsIFrame* aDetachedFrame,
-+ nsIDocument* aContainerDoc);
-
- /**
-- * Retrieves the detached view and the document containing the view,
-- * as set by SetDetachedSubdocView().
-+ * Retrieves the detached nsIFrame and the document containing the nsIFrame,
-+ * as set by SetDetachedSubdocFrame().
- */
-- nsView* GetDetachedSubdocView(nsIDocument** aContainerDoc) const;
-+ nsIFrame* GetDetachedSubdocFrame(nsIDocument** aContainerDoc) const;
-
- /**
- * Applies a new set of sandbox flags. These are merged with the sandbox
-@@ -326,12 +327,12 @@
- nsRefPtr<nsFrameMessageManager> mMessageManager;
- nsCOMPtr<nsIInProcessContentFrameMessageManager> mChildMessageManager;
- private:
-- // Stores the root view of the subdocument while the subdocument is being
-+ // Stores the root frame of the subdocument while the subdocument is being
- // reframed. Used to restore the presentation after reframing.
-- nsView* mDetachedSubdocViews;
-+ nsWeakFrame mDetachedSubdocFrame;
- // Stores the containing document of the frame corresponding to this
- // frame loader. This is reference is kept valid while the subframe's
-- // presentation is detached and stored in mDetachedSubdocViews. This
-+ // presentation is detached and stored in mDetachedSubdocFrame. This
- // enables us to detect whether the frame has moved documents during
- // a reframe, so that we know not to restore the presentation.
- nsCOMPtr<nsIDocument> mContainerDocWhileDetached;
-diff -r 751208d22b91 -r ee870911fabb layout/generic/nsSubDocumentFrame.cpp
---- a/layout/generic/nsSubDocumentFrame.cpp Thu May 26 17:07:49 2016 -0400
-+++ b/layout/generic/nsSubDocumentFrame.cpp Wed May 04 16:12:48 2016 -0500
-@@ -130,13 +130,16 @@
- nsRefPtr<nsFrameLoader> frameloader = FrameLoader();
- if (frameloader) {
- nsCOMPtr<nsIDocument> oldContainerDoc;
-- nsView* detachedViews =
-- frameloader->GetDetachedSubdocView(getter_AddRefs(oldContainerDoc));
-- frameloader->SetDetachedSubdocView(nullptr, nullptr);
-- if (detachedViews) {
-- if (oldContainerDoc == aContent->OwnerDoc()) {
-+ nsIFrame* detachedFrame =
-+ frameloader->GetDetachedSubdocFrame(getter_AddRefs(oldContainerDoc));
-+ frameloader->SetDetachedSubdocFrame(nullptr, nullptr);
-+ MOZ_ASSERT(oldContainerDoc || !detachedFrame);
-+ if (oldContainerDoc) {
-+ nsView* detachedView =
-+ detachedFrame ? detachedFrame->GetView() : nullptr;
-+ if (detachedView && oldContainerDoc == aContent->OwnerDoc()) {
- // Restore stashed presentation.
-- ::InsertViewsInReverseOrder(detachedViews, mInnerView);
-+ ::InsertViewsInReverseOrder(detachedView, mInnerView);
- ::EndSwapDocShellsForViews(mInnerView->GetFirstChild());
- } else {
- // Presentation is for a different document, don't restore it.
-@@ -252,11 +255,12 @@
- nsRefPtr<nsFrameLoader> frameloader = FrameLoader();
- if (frameloader) {
- nsCOMPtr<nsIDocument> oldContainerDoc;
-- nsView* detachedViews =
-- frameloader->GetDetachedSubdocView(getter_AddRefs(oldContainerDoc));
-- if (detachedViews) {
-- nsSize size = detachedViews->GetBounds().Size();
-- nsPresContext* presContext = detachedViews->GetFrame()->PresContext();
-+ nsIFrame* detachedFrame =
-+ frameloader->GetDetachedSubdocFrame(getter_AddRefs(oldContainerDoc));
-+ nsView* view = detachedFrame ? detachedFrame->GetView() : nullptr;
-+ if (view) {
-+ nsSize size = view->GetBounds().Size();
-+ nsPresContext* presContext = detachedFrame->PresContext();
- return nsIntSize(presContext->AppUnitsToDevPixels(size.width),
- presContext->AppUnitsToDevPixels(size.height));
- }
-@@ -939,7 +943,7 @@
-
- // Either the frame has been constructed by now, or it never will be,
- // either way we want to clear the stashed views.
-- mFrameLoader->SetDetachedSubdocView(nullptr, nullptr);
-+ mFrameLoader->SetDetachedSubdocFrame(nullptr, nullptr);
-
- nsSubDocumentFrame* frame = do_QueryFrame(mFrameElement->GetPrimaryFrame());
- if ((!frame && mHideViewerIfFrameless) ||
-@@ -974,15 +978,25 @@
- RefPtr<nsFrameLoader> frameloader = FrameLoader();
- if (frameloader) {
- nsView* detachedViews = ::BeginSwapDocShellsForViews(mInnerView->GetFirstChild());
-- frameloader->SetDetachedSubdocView(detachedViews, mContent->OwnerDoc());
-
-- // We call nsFrameLoader::HideViewer() in a script runner so that we can
-- // safely determine whether the frame is being reframed or destroyed.
-- nsContentUtils::AddScriptRunner(
-- new nsHideViewer(mContent,
-- frameloader,
-- PresContext()->PresShell(),
-- (mDidCreateDoc || mCallingShow)));
-+ if (detachedViews && detachedViews->GetFrame()) {
-+ MOZ_ASSERT(mContent->OwnerDoc());
-+ frameloader->SetDetachedSubdocFrame(
-+ detachedViews->GetFrame(), mContent->OwnerDoc());
-+
-+ // We call nsFrameLoader::HideViewer() in a script runner so that we can
-+ // safely determine whether the frame is being reframed or destroyed.
-+ nsContentUtils::AddScriptRunner(
-+ new nsHideViewer(mContent,
-+ frameloader,
-+ PresContext()->PresShell(),
-+ (mDidCreateDoc || mCallingShow)));
-+ } else {
-+ frameloader->SetDetachedSubdocFrame(nullptr, nullptr);
-+ if (mDidCreateDoc || mCallingShow) {
-+ frameloader->Hide();
-+ }
-+ }
- }
-
- nsLeafFrame::DestroyFrom(aDestructRoot);
diff --git a/gnu/packages/patches/icecat-CVE-2016-2819.patch b/gnu/packages/patches/icecat-CVE-2016-2819.patch
deleted file mode 100644
index cbb833d43d..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2819.patch
+++ /dev/null
@@ -1,102 +0,0 @@
- changeset: 312054:072992bf176d
- user: Henri Sivonen <hsivonen@hsivonen.fi>
- Date: Sun May 15 17:03:06 2016 +0300
- summary: Bug 1270381. r=wchen. a=ritu
-
-diff -r d30748143c21 -r 072992bf176d parser/html/javasrc/TreeBuilder.java
---- a/parser/html/javasrc/TreeBuilder.java Mon May 09 18:05:32 2016 -0700
-+++ b/parser/html/javasrc/TreeBuilder.java Sun May 15 17:03:06 2016 +0300
-@@ -39,6 +39,11 @@
- import java.util.HashMap;
- import java.util.Map;
-
-+import org.xml.sax.ErrorHandler;
-+import org.xml.sax.Locator;
-+import org.xml.sax.SAXException;
-+import org.xml.sax.SAXParseException;
-+
- import nu.validator.htmlparser.annotation.Auto;
- import nu.validator.htmlparser.annotation.Const;
- import nu.validator.htmlparser.annotation.IdType;
-@@ -54,11 +59,6 @@
- import nu.validator.htmlparser.common.TokenHandler;
- import nu.validator.htmlparser.common.XmlViolationPolicy;
-
--import org.xml.sax.ErrorHandler;
--import org.xml.sax.Locator;
--import org.xml.sax.SAXException;
--import org.xml.sax.SAXParseException;
--
- public abstract class TreeBuilder<T> implements TokenHandler,
- TreeBuilderState<T> {
-
-@@ -1924,7 +1924,6 @@
- break starttagloop;
- }
- generateImpliedEndTags();
-- // XXX is the next if dead code?
- if (errorHandler != null && !isCurrent("table")) {
- errNoCheckUnclosedElementsOnStack();
- }
-@@ -2183,11 +2182,11 @@
- pop();
- }
- break;
-- } else if (node.isSpecial()
-+ } else if (eltPos == 0 || (node.isSpecial()
- && (node.ns != "http://www.w3.org/1999/xhtml"
-- || (node.name != "p"
-- && node.name != "address"
-- && node.name != "div"))) {
-+ || (node.name != "p"
-+ && node.name != "address"
-+ && node.name != "div")))) {
- break;
- }
- eltPos--;
-@@ -3878,7 +3877,7 @@
- pop();
- }
- break endtagloop;
-- } else if (node.isSpecial()) {
-+ } else if (eltPos == 0 || node.isSpecial()) {
- errStrayEndTag(name);
- break endtagloop;
- }
-@@ -4745,6 +4744,7 @@
- int furthestBlockPos = formattingEltStackPos + 1;
- while (furthestBlockPos <= currentPtr) {
- StackNode<T> node = stack[furthestBlockPos]; // weak ref
-+ assert furthestBlockPos > 0: "How is formattingEltStackPos + 1 not > 0?";
- if (node.isSpecial()) {
- break;
- }
-diff -r d30748143c21 -r 072992bf176d parser/html/nsHtml5TreeBuilder.cpp
---- a/parser/html/nsHtml5TreeBuilder.cpp Mon May 09 18:05:32 2016 -0700
-+++ b/parser/html/nsHtml5TreeBuilder.cpp Sun May 15 17:03:06 2016 +0300
-@@ -1102,7 +1102,7 @@
- pop();
- }
- break;
-- } else if (node->isSpecial() && (node->ns != kNameSpaceID_XHTML || (node->name != nsHtml5Atoms::p && node->name != nsHtml5Atoms::address && node->name != nsHtml5Atoms::div))) {
-+ } else if (!eltPos || (node->isSpecial() && (node->ns != kNameSpaceID_XHTML || (node->name != nsHtml5Atoms::p && node->name != nsHtml5Atoms::address && node->name != nsHtml5Atoms::div)))) {
- break;
- }
- eltPos--;
-@@ -2749,7 +2749,7 @@
- pop();
- }
- NS_HTML5_BREAK(endtagloop);
-- } else if (node->isSpecial()) {
-+ } else if (!eltPos || node->isSpecial()) {
- errStrayEndTag(name);
- NS_HTML5_BREAK(endtagloop);
- }
-@@ -3593,6 +3593,7 @@
- int32_t furthestBlockPos = formattingEltStackPos + 1;
- while (furthestBlockPos <= currentPtr) {
- nsHtml5StackNode* node = stack[furthestBlockPos];
-+ MOZ_ASSERT(furthestBlockPos > 0, "How is formattingEltStackPos + 1 not > 0?");
- if (node->isSpecial()) {
- break;
- }
diff --git a/gnu/packages/patches/icecat-CVE-2016-2821.patch b/gnu/packages/patches/icecat-CVE-2016-2821.patch
deleted file mode 100644
index 8255d60009..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2821.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- changeset: 312045:7aea44059251
- user: Olli Pettay <Olli.Pettay@helsinki.fi>
- Date: Fri May 13 20:10:22 2016 +0300
- summary: Bug 1271460, don't leak editor created element objects, r=ehsan a=ritu
-
-diff -r 09418166fd77 -r 7aea44059251 editor/libeditor/nsHTMLInlineTableEditor.cpp
---- a/editor/libeditor/nsHTMLInlineTableEditor.cpp Wed May 11 10:14:45 2016 +0100
-+++ b/editor/libeditor/nsHTMLInlineTableEditor.cpp Fri May 13 20:10:22 2016 +0300
-@@ -109,7 +109,6 @@
-
- // get the root content node.
- nsCOMPtr<nsIContent> bodyContent = GetRoot();
-- NS_ENSURE_TRUE(bodyContent, NS_ERROR_FAILURE);
-
- DeleteRefToAnonymousNode(mAddColumnBeforeButton, bodyContent, ps);
- mAddColumnBeforeButton = nullptr;
diff --git a/gnu/packages/patches/icecat-CVE-2016-2824.patch b/gnu/packages/patches/icecat-CVE-2016-2824.patch
deleted file mode 100644
index 72772ed15f..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2824.patch
+++ /dev/null
@@ -1,85 +0,0 @@
- changeset: 312070:4b54feddf36c
- user: JerryShih <hshih@mozilla.com>
- Date: Wed May 25 16:27:41 2016 +0200
- summary: Bug 1248580 - strip the uploading element num according to the uniform array size. r=jgilbert a=ritu
-
-diff -r 3c2bd9158ad3 -r 4b54feddf36c dom/canvas/WebGLContextValidate.cpp
---- a/dom/canvas/WebGLContextValidate.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/dom/canvas/WebGLContextValidate.cpp Wed May 25 16:27:41 2016 +0200
-@@ -1531,9 +1531,10 @@
- if (!loc->ValidateArrayLength(setterElemSize, setterArraySize, this, funcName))
- return false;
-
-+ MOZ_ASSERT((size_t)loc->mActiveInfo->mElemCount > loc->mArrayIndex);
-+ size_t uniformElemCount = loc->mActiveInfo->mElemCount - loc->mArrayIndex;
- *out_rawLoc = loc->mLoc;
-- *out_numElementsToUpload = std::min((size_t)loc->mActiveInfo->mElemCount,
-- setterArraySize / setterElemSize);
-+ *out_numElementsToUpload = std::min(uniformElemCount, setterArraySize / setterElemSize);
- return true;
- }
-
-diff -r 3c2bd9158ad3 -r 4b54feddf36c dom/canvas/WebGLProgram.cpp
---- a/dom/canvas/WebGLProgram.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/dom/canvas/WebGLProgram.cpp Wed May 25 16:27:41 2016 +0200
-@@ -510,8 +510,14 @@
- const NS_LossyConvertUTF16toASCII userName(userName_wide);
-
- nsDependentCString baseUserName;
-- bool isArray;
-- size_t arrayIndex;
-+ bool isArray = false;
-+ // GLES 2.0.25, Section 2.10, p35
-+ // If the the uniform location is an array, then the location of the first
-+ // element of that array can be retrieved by either using the name of the
-+ // uniform array, or the name of the uniform array appended with "[0]".
-+ // The ParseName() can't recognize this rule. So always initialize
-+ // arrayIndex with 0.
-+ size_t arrayIndex = 0;
- if (!ParseName(userName, &baseUserName, &isArray, &arrayIndex))
- return nullptr;
-
-@@ -536,7 +542,8 @@
- return nullptr;
-
- nsRefPtr<WebGLUniformLocation> locObj = new WebGLUniformLocation(mContext, LinkInfo(),
-- loc, activeInfo);
-+ loc, arrayIndex,
-+ activeInfo);
- return locObj.forget();
- }
-
-diff -r 3c2bd9158ad3 -r 4b54feddf36c dom/canvas/WebGLUniformLocation.cpp
---- a/dom/canvas/WebGLUniformLocation.cpp Tue May 10 22:58:47 2016 -0500
-+++ b/dom/canvas/WebGLUniformLocation.cpp Wed May 25 16:27:41 2016 +0200
-@@ -16,10 +16,13 @@
-
- WebGLUniformLocation::WebGLUniformLocation(WebGLContext* webgl,
- const webgl::LinkedProgramInfo* linkInfo,
-- GLuint loc, const WebGLActiveInfo* activeInfo)
-+ GLuint loc,
-+ size_t arrayIndex,
-+ const WebGLActiveInfo* activeInfo)
- : WebGLContextBoundObject(webgl)
- , mLinkInfo(linkInfo)
- , mLoc(loc)
-+ , mArrayIndex(arrayIndex)
- , mActiveInfo(activeInfo)
- { }
-
-diff -r 3c2bd9158ad3 -r 4b54feddf36c dom/canvas/WebGLUniformLocation.h
---- a/dom/canvas/WebGLUniformLocation.h Tue May 10 22:58:47 2016 -0500
-+++ b/dom/canvas/WebGLUniformLocation.h Wed May 25 16:27:41 2016 +0200
-@@ -41,10 +41,11 @@
-
- const WeakPtr<const webgl::LinkedProgramInfo> mLinkInfo;
- const GLuint mLoc;
-+ const size_t mArrayIndex;
- const WebGLActiveInfo* const mActiveInfo;
-
- WebGLUniformLocation(WebGLContext* webgl, const webgl::LinkedProgramInfo* linkInfo,
-- GLuint loc, const WebGLActiveInfo* activeInfo);
-+ GLuint loc, size_t arrayIndex, const WebGLActiveInfo* activeInfo);
-
- bool ValidateForProgram(WebGLProgram* prog, WebGLContext* webgl,
- const char* funcName) const;
diff --git a/gnu/packages/patches/icecat-CVE-2016-2828.patch b/gnu/packages/patches/icecat-CVE-2016-2828.patch
deleted file mode 100644
index 951eb4fc46..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2828.patch
+++ /dev/null
@@ -1,185 +0,0 @@
- changeset: 312096:dc190bd03d24
- tag: FIREFOX_45_2_0esr_BUILD2
- tag: FIREFOX_45_2_0esr_RELEASE
- user: Jeff Gilbert <jgilbert@mozilla.com>
- Date: Thu Apr 14 13:50:04 2016 -0700
- summary: Bug 1224199 - Destroy SharedSurfaces before ~GLContext(). - r=jrmuizel a=lizzard
-
-diff -r b24e1cc592ec -r dc190bd03d24 gfx/gl/GLBlitHelper.cpp
---- a/gfx/gl/GLBlitHelper.cpp Mon Mar 07 11:51:12 2016 +0000
-+++ b/gfx/gl/GLBlitHelper.cpp Thu Apr 14 13:50:04 2016 -0700
-@@ -172,6 +172,9 @@
-
- GLBlitHelper::~GLBlitHelper()
- {
-+ if (!mGL->MakeCurrent())
-+ return;
-+
- DeleteTexBlitProgram();
-
- GLuint tex[] = {
-diff -r b24e1cc592ec -r dc190bd03d24 gfx/gl/GLContext.cpp
---- a/gfx/gl/GLContext.cpp Mon Mar 07 11:51:12 2016 +0000
-+++ b/gfx/gl/GLContext.cpp Thu Apr 14 13:50:04 2016 -0700
-@@ -2079,12 +2079,13 @@
- if (IsDestroyed())
- return;
-
-+ // Null these before they're naturally nulled after dtor, as we want GLContext to
-+ // still be alive in *their* dtors.
-+ mScreen = nullptr;
-+ mBlitHelper = nullptr;
-+ mReadTexImageHelper = nullptr;
-+
- if (MakeCurrent()) {
-- DestroyScreenBuffer();
--
-- mBlitHelper = nullptr;
-- mReadTexImageHelper = nullptr;
--
- mTexGarbageBin->GLContextTeardown();
- } else {
- NS_WARNING("MakeCurrent() failed during MarkDestroyed! Skipping GL object teardown.");
-@@ -2328,8 +2329,6 @@
- return false;
- }
-
-- DestroyScreenBuffer();
--
- // This will rebind to 0 (Screen) if needed when
- // it falls out of scope.
- ScopedBindFramebuffer autoFB(this);
-@@ -2349,12 +2348,6 @@
- }
-
- void
--GLContext::DestroyScreenBuffer()
--{
-- mScreen = nullptr;
--}
--
--void
- GLContext::ForceDirtyScreen()
- {
- ScopedBindFramebuffer autoFB(0);
-diff -r b24e1cc592ec -r dc190bd03d24 gfx/gl/GLContext.h
---- a/gfx/gl/GLContext.h Mon Mar 07 11:51:12 2016 +0000
-+++ b/gfx/gl/GLContext.h Thu Apr 14 13:50:04 2016 -0700
-@@ -3492,8 +3492,6 @@
- friend class GLScreenBuffer;
- UniquePtr<GLScreenBuffer> mScreen;
-
-- void DestroyScreenBuffer();
--
- SharedSurface* mLockedSurface;
-
- public:
-diff -r b24e1cc592ec -r dc190bd03d24 gfx/gl/GLReadTexImageHelper.cpp
---- a/gfx/gl/GLReadTexImageHelper.cpp Mon Mar 07 11:51:12 2016 +0000
-+++ b/gfx/gl/GLReadTexImageHelper.cpp Thu Apr 14 13:50:04 2016 -0700
-@@ -31,6 +31,9 @@
-
- GLReadTexImageHelper::~GLReadTexImageHelper()
- {
-+ if (!mGL->MakeCurrent())
-+ return;
-+
- mGL->fDeleteProgram(mPrograms[0]);
- mGL->fDeleteProgram(mPrograms[1]);
- mGL->fDeleteProgram(mPrograms[2]);
-diff -r b24e1cc592ec -r dc190bd03d24 gfx/gl/SharedSurfaceANGLE.cpp
---- a/gfx/gl/SharedSurfaceANGLE.cpp Mon Mar 07 11:51:12 2016 +0000
-+++ b/gfx/gl/SharedSurfaceANGLE.cpp Thu Apr 14 13:50:04 2016 -0700
-@@ -120,8 +120,10 @@
- {
- mEGL->fDestroySurface(Display(), mPBuffer);
-
-+ if (!mGL->MakeCurrent())
-+ return;
-+
- if (mFence) {
-- mGL->MakeCurrent();
- mGL->fDeleteFences(1, &mFence);
- }
- }
-diff -r b24e1cc592ec -r dc190bd03d24 gfx/gl/SharedSurfaceEGL.cpp
---- a/gfx/gl/SharedSurfaceEGL.cpp Mon Mar 07 11:51:12 2016 +0000
-+++ b/gfx/gl/SharedSurfaceEGL.cpp Thu Apr 14 13:50:04 2016 -0700
-@@ -87,9 +87,12 @@
- {
- mEGL->fDestroyImage(Display(), mImage);
-
-- mGL->MakeCurrent();
-- mGL->fDeleteTextures(1, &mProdTex);
-- mProdTex = 0;
-+ if (mSync) {
-+ // We can't call this unless we have the ext, but we will always have
-+ // the ext if we have something to destroy.
-+ mEGL->fDestroySync(Display(), mSync);
-+ mSync = 0;
-+ }
-
- if (mConsTex) {
- MOZ_ASSERT(mGarbageBin);
-@@ -97,12 +100,11 @@
- mConsTex = 0;
- }
-
-- if (mSync) {
-- // We can't call this unless we have the ext, but we will always have
-- // the ext if we have something to destroy.
-- mEGL->fDestroySync(Display(), mSync);
-- mSync = 0;
-- }
-+ if (!mGL->MakeCurrent())
-+ return;
-+
-+ mGL->fDeleteTextures(1, &mProdTex);
-+ mProdTex = 0;
- }
-
- void
-diff -r b24e1cc592ec -r dc190bd03d24 gfx/gl/SharedSurfaceGralloc.cpp
---- a/gfx/gl/SharedSurfaceGralloc.cpp Mon Mar 07 11:51:12 2016 +0000
-+++ b/gfx/gl/SharedSurfaceGralloc.cpp Thu Apr 14 13:50:04 2016 -0700
-@@ -154,7 +154,9 @@
-
- DEBUG_PRINT("[SharedSurface_Gralloc %p] destroyed\n", this);
-
-- mGL->MakeCurrent();
-+ if (!mGL->MakeCurrent())
-+ return;
-+
- mGL->fDeleteTextures(1, &mProdTex);
-
- if (mSync) {
-diff -r b24e1cc592ec -r dc190bd03d24 gfx/gl/SharedSurfaceIO.cpp
---- a/gfx/gl/SharedSurfaceIO.cpp Mon Mar 07 11:51:12 2016 +0000
-+++ b/gfx/gl/SharedSurfaceIO.cpp Thu Apr 14 13:50:04 2016 -0700
-@@ -111,11 +111,10 @@
-
- SharedSurface_IOSurface::~SharedSurface_IOSurface()
- {
-- if (mProdTex) {
-- DebugOnly<bool> success = mGL->MakeCurrent();
-- MOZ_ASSERT(success);
-- mGL->fDeleteTextures(1, &mProdTex);
-- }
-+ if (!mGL->MakeCurrent())
-+ return;
-+
-+ mGL->fDeleteTextures(1, &mProdTex);
- }
-
- ////////////////////////////////////////////////////////////////////////
-diff -r b24e1cc592ec -r dc190bd03d24 gfx/gl/TextureGarbageBin.cpp
---- a/gfx/gl/TextureGarbageBin.cpp Mon Mar 07 11:51:12 2016 +0000
-+++ b/gfx/gl/TextureGarbageBin.cpp Thu Apr 14 13:50:04 2016 -0700
-@@ -36,6 +36,7 @@
- if (!mGL)
- return;
-
-+ MOZ_RELEASE_ASSERT(mGL->IsCurrent());
- while (!mGarbageTextures.empty()) {
- GLuint tex = mGarbageTextures.top();
- mGarbageTextures.pop();
diff --git a/gnu/packages/patches/icecat-CVE-2016-2831.patch b/gnu/packages/patches/icecat-CVE-2016-2831.patch
deleted file mode 100644
index b99ecb6458..0000000000
--- a/gnu/packages/patches/icecat-CVE-2016-2831.patch
+++ /dev/null
@@ -1,120 +0,0 @@
- changeset: 312091:a3fff31b8b70
- user: Xidorn Quan <quanxunzhen@gmail.com>
- Date: Thu Apr 14 17:38:13 2016 +1000
- summary: Bug 1261933 - Continue unlocking pointer even if the widget has gone. r=smaug a=lizzard
-
- MozReview-Commit-ID: 1siQhemFf9O
-
-diff -r f5e862ea4a72 -r a3fff31b8b70 dom/base/nsDocument.cpp
---- a/dom/base/nsDocument.cpp Tue May 31 18:35:26 2016 -0700
-+++ b/dom/base/nsDocument.cpp Thu Apr 14 17:38:13 2016 +1000
-@@ -12315,49 +12315,37 @@
- bool
- nsDocument::SetPointerLock(Element* aElement, int aCursorStyle)
- {
-- // NOTE: aElement will be nullptr when unlocking.
-- nsCOMPtr<nsPIDOMWindow> window = GetWindow();
-- if (!window) {
-- NS_WARNING("SetPointerLock(): No Window");
-- return false;
-- }
--
-- nsIDocShell *docShell = window->GetDocShell();
-- if (!docShell) {
-- NS_WARNING("SetPointerLock(): No DocShell (window already closed?)");
-- return false;
-- }
--
-- nsRefPtr<nsPresContext> presContext;
-- docShell->GetPresContext(getter_AddRefs(presContext));
-- if (!presContext) {
-- NS_WARNING("SetPointerLock(): Unable to get presContext in \
-- domWindow->GetDocShell()->GetPresContext()");
-+ MOZ_ASSERT(!aElement || aElement->OwnerDoc() == this,
-+ "We should be either unlocking pointer (aElement is nullptr), "
-+ "or locking pointer to an element in this document");
-+#ifdef DEBUG
-+ if (!aElement) {
-+ nsCOMPtr<nsIDocument> pointerLockedDoc =
-+ do_QueryReferent(EventStateManager::sPointerLockedDoc);
-+ MOZ_ASSERT(pointerLockedDoc == this);
-+ }
-+#endif
-+
-+ nsIPresShell* shell = GetShell();
-+ if (!shell) {
-+ NS_WARNING("SetPointerLock(): No PresShell");
- return false;
- }
--
-- nsCOMPtr<nsIPresShell> shell = presContext->PresShell();
-- if (!shell) {
-- NS_WARNING("SetPointerLock(): Unable to find presContext->PresShell()");
-- return false;
-- }
--
-- nsIFrame* rootFrame = shell->GetRootFrame();
-- if (!rootFrame) {
-- NS_WARNING("SetPointerLock(): Unable to get root frame");
-+ nsPresContext* presContext = shell->GetPresContext();
-+ if (!presContext) {
-+ NS_WARNING("SetPointerLock(): Unable to get PresContext");
- return false;
- }
-
-- nsCOMPtr<nsIWidget> widget = rootFrame->GetNearestWidget();
-- if (!widget) {
-- NS_WARNING("SetPointerLock(): Unable to find widget in \
-- shell->GetRootFrame()->GetNearestWidget();");
-- return false;
-- }
--
-- if (aElement && (aElement->OwnerDoc() != this)) {
-- NS_WARNING("SetPointerLock(): Element not in this document.");
-- return false;
-+ nsCOMPtr<nsIWidget> widget;
-+ nsIFrame* rootFrame = shell->GetRootFrame();
-+ if (!NS_WARN_IF(!rootFrame)) {
-+ widget = rootFrame->GetNearestWidget();
-+ NS_WARN_IF_FALSE(widget, "SetPointerLock(): Unable to find widget "
-+ "in shell->GetRootFrame()->GetNearestWidget();");
-+ if (aElement && !widget) {
-+ return false;
-+ }
- }
-
- // Hide the cursor and set pointer lock for future mouse events
-diff -r f5e862ea4a72 -r a3fff31b8b70 dom/events/EventStateManager.cpp
---- a/dom/events/EventStateManager.cpp Tue May 31 18:35:26 2016 -0700
-+++ b/dom/events/EventStateManager.cpp Thu Apr 14 17:38:13 2016 +1000
-@@ -4128,10 +4128,6 @@
- // NOTE: aElement will be nullptr when unlocking.
- sIsPointerLocked = !!aElement;
-
-- if (!aWidget) {
-- return;
-- }
--
- // Reset mouse wheel transaction
- WheelTransaction::EndTransaction();
-
-@@ -4140,6 +4136,8 @@
- do_GetService("@mozilla.org/widget/dragservice;1");
-
- if (sIsPointerLocked) {
-+ MOZ_ASSERT(aWidget, "Locking pointer requires a widget");
-+
- // Store the last known ref point so we can reposition the pointer after unlock.
- mPreLockPoint = sLastRefPoint;
-
-@@ -4164,7 +4162,9 @@
- // pre-pointerlock position, so that the synthetic mouse event reports
- // no movement.
- sLastRefPoint = mPreLockPoint;
-- aWidget->SynthesizeNativeMouseMove(mPreLockPoint + aWidget->WidgetToScreenOffset());
-+ if (aWidget) {
-+ aWidget->SynthesizeNativeMouseMove(mPreLockPoint + aWidget->WidgetToScreenOffset());
-+ }
-
- // Don't retarget events to this element any more.
- nsIPresShell::SetCapturingContent(nullptr, CAPTURE_POINTERLOCK);
diff --git a/gnu/packages/patches/icecat-avoid-bundled-includes.patch b/gnu/packages/patches/icecat-avoid-bundled-includes.patch
deleted file mode 100644
index d11b528b8e..0000000000
--- a/gnu/packages/patches/icecat-avoid-bundled-includes.patch
+++ /dev/null
@@ -1,35 +0,0 @@
-Do not use headers from bundled libraries.
-
---- icecat-38.3.0/xpcom/build/moz.build.orig 2015-10-12 19:33:43.000000000 -0400
-+++ icecat-38.3.0/xpcom/build/moz.build 2015-10-13 16:37:28.693224858 -0400
-@@ -92,10 +92,5 @@
- '/docshell/base',
- ]
-
--if CONFIG['MOZ_VPX']:
-- LOCAL_INCLUDES += [
-- '/media/libvpx',
-- ]
--
- if CONFIG['MOZ_WIDGET_TOOLKIT'] == 'cocoa':
- CXXFLAGS += CONFIG['TK_CFLAGS']
---- icecat-38.3.0/storage/src/moz.build.orig 2015-10-12 19:34:45.000000000 -0400
-+++ icecat-38.3.0/storage/src/moz.build 2015-10-13 18:48:26.584724518 -0400
-@@ -66,7 +66,6 @@
- DEFINES['SQLITE_MAX_LIKE_PATTERN_LENGTH'] = 50000
-
- LOCAL_INCLUDES += [
-- '/db/sqlite3/src',
- '/dom/base',
- ]
-
---- icecat-38.3.0/dom/indexedDB/moz.build.orig 2015-10-12 19:35:00.000000000 -0400
-+++ icecat-38.3.0/dom/indexedDB/moz.build 2015-10-13 19:10:10.528756487 -0400
-@@ -91,7 +91,6 @@
- FAIL_ON_WARNINGS = True
-
- LOCAL_INCLUDES += [
-- '/db/sqlite3/src',
- '/dom/base',
- '/dom/storage',
- '/dom/workers',
diff --git a/gnu/packages/patches/icecat-avoid-bundled-libraries.patch b/gnu/packages/patches/icecat-avoid-bundled-libraries.patch
new file mode 100644
index 0000000000..267f7b8aac
--- /dev/null
+++ b/gnu/packages/patches/icecat-avoid-bundled-libraries.patch
@@ -0,0 +1,50 @@
+Fixes needed when avoiding bundled libraries.
+
+--- icecat-45.3.0/xpcom/build/moz.build.orig
++++ icecat-45.3.0/xpcom/build/moz.build
+@@ -92,10 +92,5 @@
+ '/docshell/base',
+ ]
+
+-if CONFIG['MOZ_VPX']:
+- LOCAL_INCLUDES += [
+- '/media/libvpx',
+- ]
+-
+ if CONFIG['MOZ_WIDGET_TOOLKIT'] == 'cocoa':
+ CXXFLAGS += CONFIG['TK_CFLAGS']
+--- icecat-45.3.0/storage/moz.build.orig
++++ icecat-45.3.0/storage/moz.build
+@@ -108,7 +108,6 @@
+ DEFINES['SQLITE_MAX_LIKE_PATTERN_LENGTH'] = 50000
+
+ LOCAL_INCLUDES += [
+- '/db/sqlite3/src',
+ '/dom/base',
+ ]
+
+--- icecat-45.3.0/dom/indexedDB/moz.build.orig
++++ icecat-45.3.0/dom/indexedDB/moz.build
+@@ -96,7 +96,6 @@
+ SOURCES['Key.cpp'].flags += ['-Wno-error=type-limits']
+
+ LOCAL_INCLUDES += [
+- '/db/sqlite3/src',
+ '/dom/base',
+ '/dom/storage',
+ '/dom/workers',
+--- icecat-45.3.0/modules/libmar/tests/Makefile.in.orig
++++ icecat-45.3.0/modules/libmar/tests/Makefile.in
+@@ -10,12 +10,5 @@
+ ifndef MOZ_PROFILE_GENERATE
+ libs::
+ $(INSTALL) ../tool/signmar$(BIN_SUFFIX) $(TESTROOT)/unit
+- $(INSTALL) $(DEPTH)/dist/bin/$(DLL_PREFIX)nss3$(DLL_SUFFIX) $(TESTROOT)/unit
+-ifndef MOZ_FOLD_LIBS
+- $(INSTALL) $(DEPTH)/dist/bin/$(DLL_PREFIX)nssutil3$(DLL_SUFFIX) $(TESTROOT)/unit
+- $(INSTALL) $(DEPTH)/dist/bin/$(DLL_PREFIX)plc4$(DLL_SUFFIX) $(TESTROOT)/unit
+- $(INSTALL) $(DEPTH)/dist/bin/$(DLL_PREFIX)nspr4$(DLL_SUFFIX) $(TESTROOT)/unit
+- $(INSTALL) $(DEPTH)/dist/bin/$(DLL_PREFIX)plds4$(DLL_SUFFIX) $(TESTROOT)/unit
+-endif
+ endif
+ endif # Not Android
diff --git a/gnu/packages/patches/libupnp-CVE-2016-6255.patch b/gnu/packages/patches/libupnp-CVE-2016-6255.patch
new file mode 100644
index 0000000000..c9a3fa284c
--- /dev/null
+++ b/gnu/packages/patches/libupnp-CVE-2016-6255.patch
@@ -0,0 +1,50 @@
+Fix CVE-2016-6255:
+
+https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-6255
+http://www.openwall.com/lists/oss-security/2016/07/18/13
+
+Patch adapted from upstream commit:
+
+https://github.com/mrjimenez/pupnp/commit/d64d6a44906b5aa5306bdf1708531d698654dda5
+
+The upstream change is simplified to unconditionally disable the HTTP
+POST feature.
+
+From d64d6a44906b5aa5306bdf1708531d698654dda5 Mon Sep 17 00:00:00 2001
+From: Matthew Garrett <mjg59@srcf.ucam.org>
+Date: Tue, 23 Feb 2016 13:53:20 -0800
+Subject: [PATCH] Don't allow unhandled POSTs to write to the filesystem by
+ default
+
+If there's no registered handler for a POST request, the default behaviour
+is to write it to the filesystem. Several million deployed devices appear
+to have this behaviour, making it possible to (at least) store arbitrary
+data on them. Add a configure option that enables this behaviour, and change
+the default to just drop POSTs that aren't directly handled.
+
+Signed-off-by: Marcelo Roberto Jimenez <mroberto@users.sourceforge.net>
+(cherry picked from commit c91a8a3903367e1163765b73eb4d43be7d7927fa)
+---
+ configure.ac | 9 +++++++++
+ upnp/inc/upnpconfig.h.in | 9 +++++++++
+ upnp/src/genlib/net/http/webserver.c | 4 ++++
+ 3 files changed, 22 insertions(+)
+
+diff --git a/upnp/src/genlib/net/http/webserver.c b/upnp/src/genlib/net/http/webserver.c
+index 26bf0f7..7ae8c1e 100644
+--- a/upnp/src/genlib/net/http/webserver.c
++++ b/upnp/src/genlib/net/http/webserver.c
+@@ -1367,9 +1367,13 @@ static int http_RecvPostMessage(
+ if (Fp == NULL)
+ return HTTP_INTERNAL_SERVER_ERROR;
+ } else {
++#if 0
+ Fp = fopen(filename, "wb");
+ if (Fp == NULL)
+ return HTTP_UNAUTHORIZED;
++#else
++ return HTTP_NOT_FOUND;
++#endif
+ }
+ parser->position = POS_ENTITY;
+ do {
diff --git a/gnu/packages/patches/qemu-CVE-2016-8576.patch b/gnu/packages/patches/qemu-CVE-2016-8576.patch
new file mode 100644
index 0000000000..5031b59d81
--- /dev/null
+++ b/gnu/packages/patches/qemu-CVE-2016-8576.patch
@@ -0,0 +1,62 @@
+From 20009bdaf95d10bf748fa69b104672d3cfaceddf Mon Sep 17 00:00:00 2001
+From: Gerd Hoffmann <kraxel@redhat.com>
+Date: Fri, 7 Oct 2016 10:15:29 +0200
+Subject: [PATCH] xhci: limit the number of link trbs we are willing to process
+
+Signed-off-by: Gerd Hoffmann <kraxel@redhat.com>
+---
+ hw/usb/hcd-xhci.c | 10 ++++++++++
+ 1 file changed, 10 insertions(+)
+
+diff --git a/hw/usb/hcd-xhci.c b/hw/usb/hcd-xhci.c
+index 726435c..ee4fa48 100644
+--- a/hw/usb/hcd-xhci.c
++++ b/hw/usb/hcd-xhci.c
+@@ -54,6 +54,8 @@
+ * to the specs when it gets them */
+ #define ER_FULL_HACK
+
++#define TRB_LINK_LIMIT 4
++
+ #define LEN_CAP 0x40
+ #define LEN_OPER (0x400 + 0x10 * MAXPORTS)
+ #define LEN_RUNTIME ((MAXINTRS + 1) * 0x20)
+@@ -1000,6 +1002,7 @@ static TRBType xhci_ring_fetch(XHCIState *xhci, XHCIRing *ring, XHCITRB *trb,
+ dma_addr_t *addr)
+ {
+ PCIDevice *pci_dev = PCI_DEVICE(xhci);
++ uint32_t link_cnt = 0;
+
+ while (1) {
+ TRBType type;
+@@ -1026,6 +1029,9 @@ static TRBType xhci_ring_fetch(XHCIState *xhci, XHCIRing *ring, XHCITRB *trb,
+ ring->dequeue += TRB_SIZE;
+ return type;
+ } else {
++ if (++link_cnt > TRB_LINK_LIMIT) {
++ return 0;
++ }
+ ring->dequeue = xhci_mask64(trb->parameter);
+ if (trb->control & TRB_LK_TC) {
+ ring->ccs = !ring->ccs;
+@@ -1043,6 +1049,7 @@ static int xhci_ring_chain_length(XHCIState *xhci, const XHCIRing *ring)
+ bool ccs = ring->ccs;
+ /* hack to bundle together the two/three TDs that make a setup transfer */
+ bool control_td_set = 0;
++ uint32_t link_cnt = 0;
+
+ while (1) {
+ TRBType type;
+@@ -1058,6 +1065,9 @@ static int xhci_ring_chain_length(XHCIState *xhci, const XHCIRing *ring)
+ type = TRB_TYPE(trb);
+
+ if (type == TR_LINK) {
++ if (++link_cnt > TRB_LINK_LIMIT) {
++ return -length;
++ }
+ dequeue = xhci_mask64(trb.parameter);
+ if (trb.control & TRB_LK_TC) {
+ ccs = !ccs;
+--
+1.8.3.1
+
diff --git a/gnu/packages/patches/qemu-CVE-2016-8577.patch b/gnu/packages/patches/qemu-CVE-2016-8577.patch
new file mode 100644
index 0000000000..c4132d2fb1
--- /dev/null
+++ b/gnu/packages/patches/qemu-CVE-2016-8577.patch
@@ -0,0 +1,36 @@
+Subject: [Qemu-devel] [PATCH] 9pfs: fix potential host memory leak in v9fs_read
+From: Li Qiang <liq3ea@gmail.com>
+
+In 9pfs read dispatch function, it doesn't free two QEMUIOVector
+object thus causing potential memory leak. This patch avoid this.
+
+Signed-off-by: Li Qiang <liq3ea@gmail.com>
+---
+ hw/9pfs/9p.c | 5 +++--
+ 1 file changed, 3 insertions(+), 2 deletions(-)
+
+diff --git a/hw/9pfs/9p.c b/hw/9pfs/9p.c
+index 119ee58..543a791 100644
+--- a/hw/9pfs/9p.c
++++ b/hw/9pfs/9p.c
+@@ -1826,14 +1826,15 @@ static void v9fs_read(void *opaque)
+ if (len < 0) {
+ /* IO error return the error */
+ err = len;
+- goto out;
++ goto out_free_iovec;
+ }
+ } while (count < max_count && len > 0);
+ err = pdu_marshal(pdu, offset, "d", count);
+ if (err < 0) {
+- goto out;
++ goto out_free_iovec;
+ }
+ err += offset + count;
++out_free_iovec:
+ qemu_iovec_destroy(&qiov);
+ qemu_iovec_destroy(&qiov_full);
+ } else if (fidp->fid_type == P9_FID_XATTR) {
+--
+1.8.3.1
+
diff --git a/gnu/packages/patches/qemu-CVE-2016-8578.patch b/gnu/packages/patches/qemu-CVE-2016-8578.patch
new file mode 100644
index 0000000000..92ba365727
--- /dev/null
+++ b/gnu/packages/patches/qemu-CVE-2016-8578.patch
@@ -0,0 +1,27 @@
+From: Li Qiang <liq3ea@gmail.com>
+
+In 9pfs function v9fs_iov_vunmarshal, it will not allocate space
+for empty string. This will cause several NULL pointer dereference
+issues. this patch fix this issue.
+
+Signed-off-by: Li Qiang <liq3ea@gmail.com>
+---
+ fsdev/9p-iov-marshal.c | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/fsdev/9p-iov-marshal.c b/fsdev/9p-iov-marshal.c
+index 663cad5..1d16f8d 100644
+--- a/fsdev/9p-iov-marshal.c
++++ b/fsdev/9p-iov-marshal.c
+@@ -125,7 +125,7 @@ ssize_t v9fs_iov_vunmarshal(struct iovec *out_sg, int out_num, size_t offset,
+ str->data = g_malloc(str->size + 1);
+ copied = v9fs_unpack(str->data, out_sg, out_num, offset,
+ str->size);
+- if (copied > 0) {
++ if (copied >= 0) {
+ str->data[str->size] = 0;
+ } else {
+ v9fs_string_free(str);
+--
+1.8.3.1
+
diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch b/gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch
deleted file mode 100644
index 00e5b7c771..0000000000
--- a/gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch
+++ /dev/null
@@ -1,32 +0,0 @@
-From 6b12d93d2c7428a34bfd4b3813ba339ed57b698a Mon Sep 17 00:00:00 2001
-From: Jouni Malinen <j@w1.fi>
-Date: Sun, 25 Oct 2015 15:45:50 +0200
-Subject: [PATCH] WNM: Ignore Key Data in WNM Sleep Mode Response frame if no
- PMF in use
-
-WNM Sleep Mode Response frame is used to update GTK/IGTK only if PMF is
-enabled. Verify that PMF is in use before using this field on station
-side to avoid accepting unauthenticated key updates. (CVE-2015-5310)
-
-Signed-off-by: Jouni Malinen <j@w1.fi>
----
- wpa_supplicant/wnm_sta.c | 6 ++++++
- 1 file changed, 6 insertions(+)
-
-diff --git a/wpa_supplicant/wnm_sta.c b/wpa_supplicant/wnm_sta.c
-index 954de67..7d79499 100644
---- a/wpa_supplicant/wnm_sta.c
-+++ b/wpa_supplicant/wnm_sta.c
-@@ -187,6 +187,12 @@ static void wnm_sleep_mode_exit_success(struct wpa_supplicant *wpa_s,
- end = ptr + key_len_total;
- wpa_hexdump_key(MSG_DEBUG, "WNM: Key Data", ptr, key_len_total);
-
-+ if (key_len_total && !wpa_sm_pmf_enabled(wpa_s->wpa)) {
-+ wpa_msg(wpa_s, MSG_INFO,
-+ "WNM: Ignore Key Data in WNM-Sleep Mode Response - PMF not enabled");
-+ return;
-+ }
-+
- while (ptr + 1 < end) {
- if (ptr + 2 + ptr[1] > end) {
- wpa_printf(MSG_DEBUG, "WNM: Invalid Key Data element "
diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch b/gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch
deleted file mode 100644
index bfc4c74e95..0000000000
--- a/gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch
+++ /dev/null
@@ -1,51 +0,0 @@
-From bef802ece03f9ae9d52a21f0cf4f1bc2c5a1f8aa Mon Sep 17 00:00:00 2001
-From: Jouni Malinen <j@w1.fi>
-Date: Sun, 1 Nov 2015 18:24:16 +0200
-Subject: [PATCH] EAP-pwd server: Fix last fragment length validation
-
-All but the last fragment had their length checked against the remaining
-room in the reassembly buffer. This allowed a suitably constructed last
-fragment frame to try to add extra data that would go beyond the buffer.
-The length validation code in wpabuf_put_data() prevents an actual
-buffer write overflow from occurring, but this results in process
-termination. (CVE-2015-5314)
-
-Signed-off-by: Jouni Malinen <j@w1.fi>
----
- src/eap_server/eap_server_pwd.c | 6 +++---
- 1 file changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/src/eap_server/eap_server_pwd.c b/src/eap_server/eap_server_pwd.c
-index cb83ff7..9f787ab 100644
---- a/src/eap_server/eap_server_pwd.c
-+++ b/src/eap_server/eap_server_pwd.c
-@@ -970,7 +970,7 @@ static void eap_pwd_process(struct eap_sm *sm, void *priv,
- /*
- * the first and all intermediate fragments have the M bit set
- */
-- if (EAP_PWD_GET_MORE_BIT(lm_exch)) {
-+ if (EAP_PWD_GET_MORE_BIT(lm_exch) || data->in_frag_pos) {
- if ((data->in_frag_pos + len) > wpabuf_size(data->inbuf)) {
- wpa_printf(MSG_DEBUG, "EAP-pwd: Buffer overflow "
- "attack detected! (%d+%d > %d)",
-@@ -981,6 +981,8 @@ static void eap_pwd_process(struct eap_sm *sm, void *priv,
- }
- wpabuf_put_data(data->inbuf, pos, len);
- data->in_frag_pos += len;
-+ }
-+ if (EAP_PWD_GET_MORE_BIT(lm_exch)) {
- wpa_printf(MSG_DEBUG, "EAP-pwd: Got a %d byte fragment",
- (int) len);
- return;
-@@ -990,8 +992,6 @@ static void eap_pwd_process(struct eap_sm *sm, void *priv,
- * buffering fragments so that's how we know it's the last)
- */
- if (data->in_frag_pos) {
-- wpabuf_put_data(data->inbuf, pos, len);
-- data->in_frag_pos += len;
- pos = wpabuf_head_u8(data->inbuf);
- len = data->in_frag_pos;
- wpa_printf(MSG_DEBUG, "EAP-pwd: Last fragment, %d bytes",
---
-1.9.1
-
diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch b/gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch
deleted file mode 100644
index 82c26398b6..0000000000
--- a/gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch
+++ /dev/null
@@ -1,54 +0,0 @@
-From 8057821706784608b828e769ccefbced95591e50 Mon Sep 17 00:00:00 2001
-From: Jouni Malinen <j@w1.fi>
-Date: Sun, 1 Nov 2015 18:18:17 +0200
-Subject: [PATCH] EAP-pwd peer: Fix last fragment length validation
-
-All but the last fragment had their length checked against the remaining
-room in the reassembly buffer. This allowed a suitably constructed last
-fragment frame to try to add extra data that would go beyond the buffer.
-The length validation code in wpabuf_put_data() prevents an actual
-buffer write overflow from occurring, but this results in process
-termination. (CVE-2015-5315)
-
-Signed-off-by: Jouni Malinen <j@w1.fi>
----
- src/eap_peer/eap_pwd.c | 7 +++----
- 1 file changed, 3 insertions(+), 4 deletions(-)
-
-diff --git a/src/eap_peer/eap_pwd.c b/src/eap_peer/eap_pwd.c
-index 1f78544..75ceef1 100644
---- a/src/eap_peer/eap_pwd.c
-+++ b/src/eap_peer/eap_pwd.c
-@@ -903,7 +903,7 @@ eap_pwd_process(struct eap_sm *sm, void *priv, struct eap_method_ret *ret,
- /*
- * buffer and ACK the fragment
- */
-- if (EAP_PWD_GET_MORE_BIT(lm_exch)) {
-+ if (EAP_PWD_GET_MORE_BIT(lm_exch) || data->in_frag_pos) {
- data->in_frag_pos += len;
- if (data->in_frag_pos > wpabuf_size(data->inbuf)) {
- wpa_printf(MSG_INFO, "EAP-pwd: Buffer overflow attack "
-@@ -916,7 +916,8 @@ eap_pwd_process(struct eap_sm *sm, void *priv, struct eap_method_ret *ret,
- return NULL;
- }
- wpabuf_put_data(data->inbuf, pos, len);
--
-+ }
-+ if (EAP_PWD_GET_MORE_BIT(lm_exch)) {
- resp = eap_msg_alloc(EAP_VENDOR_IETF, EAP_TYPE_PWD,
- EAP_PWD_HDR_SIZE,
- EAP_CODE_RESPONSE, eap_get_id(reqData));
-@@ -930,10 +931,8 @@ eap_pwd_process(struct eap_sm *sm, void *priv, struct eap_method_ret *ret,
- * we're buffering and this is the last fragment
- */
- if (data->in_frag_pos) {
-- wpabuf_put_data(data->inbuf, pos, len);
- wpa_printf(MSG_DEBUG, "EAP-pwd: Last fragment, %d bytes",
- (int) len);
-- data->in_frag_pos += len;
- pos = wpabuf_head_u8(data->inbuf);
- len = data->in_frag_pos;
- }
---
-1.9.1
-
diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch b/gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch
deleted file mode 100644
index 3088f6a6dc..0000000000
--- a/gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch
+++ /dev/null
@@ -1,34 +0,0 @@
-From 95577884ca4fa76be91344ff7a8d5d1e6dc3da61 Mon Sep 17 00:00:00 2001
-From: Jouni Malinen <j@w1.fi>
-Date: Sun, 1 Nov 2015 19:35:44 +0200
-Subject: [PATCH] EAP-pwd peer: Fix error path for unexpected Confirm message
-
-If the Confirm message is received from the server before the Identity
-exchange has been completed, the group has not yet been determined and
-data->grp is NULL. The error path in eap_pwd_perform_confirm_exchange()
-did not take this corner case into account and could end up
-dereferencing a NULL pointer and terminating the process if invalid
-message sequence is received. (CVE-2015-5316)
-
-Signed-off-by: Jouni Malinen <j@w1.fi>
----
- src/eap_peer/eap_pwd.c | 3 ++-
- 1 file changed, 2 insertions(+), 1 deletion(-)
-
-diff --git a/src/eap_peer/eap_pwd.c b/src/eap_peer/eap_pwd.c
-index 75ceef1..892b590 100644
---- a/src/eap_peer/eap_pwd.c
-+++ b/src/eap_peer/eap_pwd.c
-@@ -774,7 +774,8 @@ eap_pwd_perform_confirm_exchange(struct eap_sm *sm, struct eap_pwd_data *data,
- wpabuf_put_data(data->outbuf, conf, SHA256_MAC_LEN);
-
- fin:
-- bin_clear_free(cruft, BN_num_bytes(data->grp->prime));
-+ if (data->grp)
-+ bin_clear_free(cruft, BN_num_bytes(data->grp->prime));
- BN_clear_free(x);
- BN_clear_free(y);
- if (data->outbuf == NULL) {
---
-1.9.1
-
diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch b/gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch
deleted file mode 100644
index acad6be0a4..0000000000
--- a/gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch
+++ /dev/null
@@ -1,82 +0,0 @@
-From ecbb0b3dc122b0d290987cf9c84010bbe53e1022 Mon Sep 17 00:00:00 2001
-From: Jouni Malinen <jouni@qca.qualcomm.com>
-Date: Fri, 4 Mar 2016 17:20:18 +0200
-Subject: [PATCH 1/5] WPS: Reject a Credential with invalid passphrase
-
-WPA/WPA2-Personal passphrase is not allowed to include control
-characters. Reject a Credential received from a WPS Registrar both as
-STA (Credential) and AP (AP Settings) if the credential is for WPAPSK or
-WPA2PSK authentication type and includes an invalid passphrase.
-
-This fixes an issue where hostapd or wpa_supplicant could have updated
-the configuration file PSK/passphrase parameter with arbitrary data from
-an external device (Registrar) that may not be fully trusted. Should
-such data include a newline character, the resulting configuration file
-could become invalid and fail to be parsed.
-
-Signed-off-by: Jouni Malinen <jouni@qca.qualcomm.com>
----
- src/utils/common.c | 12 ++++++++++++
- src/utils/common.h | 1 +
- src/wps/wps_attr_process.c | 10 ++++++++++
- 3 files changed, 23 insertions(+)
-
-diff --git a/src/utils/common.c b/src/utils/common.c
-index 450e2c6..27b7c02 100644
---- a/src/utils/common.c
-+++ b/src/utils/common.c
-@@ -697,6 +697,18 @@ int is_hex(const u8 *data, size_t len)
- }
-
-
-+int has_ctrl_char(const u8 *data, size_t len)
-+{
-+ size_t i;
-+
-+ for (i = 0; i < len; i++) {
-+ if (data[i] < 32 || data[i] == 127)
-+ return 1;
-+ }
-+ return 0;
-+}
-+
-+
- size_t merge_byte_arrays(u8 *res, size_t res_len,
- const u8 *src1, size_t src1_len,
- const u8 *src2, size_t src2_len)
-diff --git a/src/utils/common.h b/src/utils/common.h
-index 701dbb2..a972240 100644
---- a/src/utils/common.h
-+++ b/src/utils/common.h
-@@ -488,6 +488,7 @@ const char * wpa_ssid_txt(const u8 *ssid, size_t ssid_len);
-
- char * wpa_config_parse_string(const char *value, size_t *len);
- int is_hex(const u8 *data, size_t len);
-+int has_ctrl_char(const u8 *data, size_t len);
- size_t merge_byte_arrays(u8 *res, size_t res_len,
- const u8 *src1, size_t src1_len,
- const u8 *src2, size_t src2_len);
-diff --git a/src/wps/wps_attr_process.c b/src/wps/wps_attr_process.c
-index eadb22f..e8c4579 100644
---- a/src/wps/wps_attr_process.c
-+++ b/src/wps/wps_attr_process.c
-@@ -229,6 +229,16 @@ static int wps_workaround_cred_key(struct wps_credential *cred)
- cred->key_len--;
- #endif /* CONFIG_WPS_STRICT */
- }
-+
-+
-+ if (cred->auth_type & (WPS_AUTH_WPAPSK | WPS_AUTH_WPA2PSK) &&
-+ (cred->key_len < 8 || has_ctrl_char(cred->key, cred->key_len))) {
-+ wpa_printf(MSG_INFO, "WPS: Reject credential with invalid WPA/WPA2-Personal passphrase");
-+ wpa_hexdump_ascii_key(MSG_INFO, "WPS: Network Key",
-+ cred->key, cred->key_len);
-+ return -1;
-+ }
-+
- return 0;
- }
-
---
-1.9.1
-
diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch b/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch
deleted file mode 100644
index 507a96e47c..0000000000
--- a/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch
+++ /dev/null
@@ -1,51 +0,0 @@
-From 73e4abb24a936014727924d8b0b2965edfc117dd Mon Sep 17 00:00:00 2001
-From: Jouni Malinen <jouni@qca.qualcomm.com>
-Date: Fri, 4 Mar 2016 18:46:41 +0200
-Subject: [PATCH 2/5] Reject psk parameter set with invalid passphrase
- character
-
-WPA/WPA2-Personal passphrase is not allowed to include control
-characters. Reject a passphrase configuration attempt if that passphrase
-includes an invalid passphrase.
-
-This fixes an issue where wpa_supplicant could have updated the
-configuration file psk parameter with arbitrary data from the control
-interface or D-Bus interface. While those interfaces are supposed to be
-accessible only for trusted users/applications, it may be possible that
-an untrusted user has access to a management software component that
-does not validate the passphrase value before passing it to
-wpa_supplicant.
-
-This could allow such an untrusted user to inject up to 63 characters of
-almost arbitrary data into the configuration file. Such configuration
-file could result in wpa_supplicant trying to load a library (e.g.,
-opensc_engine_path, pkcs11_engine_path, pkcs11_module_path,
-load_dynamic_eap) from user controlled location when starting again.
-This would allow code from that library to be executed under the
-wpa_supplicant process privileges.
-
-Signed-off-by: Jouni Malinen <jouni@qca.qualcomm.com>
----
- wpa_supplicant/config.c | 6 ++++++
- 1 file changed, 6 insertions(+)
-
-diff --git a/wpa_supplicant/config.c b/wpa_supplicant/config.c
-index b1c7870..fdd9643 100644
---- a/wpa_supplicant/config.c
-+++ b/wpa_supplicant/config.c
-@@ -478,6 +478,12 @@ static int wpa_config_parse_psk(const struct parse_data *data,
- }
- wpa_hexdump_ascii_key(MSG_MSGDUMP, "PSK (ASCII passphrase)",
- (u8 *) value, len);
-+ if (has_ctrl_char((u8 *) value, len)) {
-+ wpa_printf(MSG_ERROR,
-+ "Line %d: Invalid passphrase character",
-+ line);
-+ return -1;
-+ }
- if (ssid->passphrase && os_strlen(ssid->passphrase) == len &&
- os_memcmp(ssid->passphrase, value, len) == 0) {
- /* No change to the previously configured value */
---
-1.9.1
-
diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch b/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch
deleted file mode 100644
index 684d25de96..0000000000
--- a/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch
+++ /dev/null
@@ -1,82 +0,0 @@
-From 0fe5a234240a108b294a87174ad197f6b5cb38e9 Mon Sep 17 00:00:00 2001
-From: Paul Stewart <pstew@google.com>
-Date: Thu, 3 Mar 2016 15:40:19 -0800
-Subject: [PATCH 3/5] Remove newlines from wpa_supplicant config network
- output
-
-Spurious newlines output while writing the config file can corrupt the
-wpa_supplicant configuration. Avoid writing these for the network block
-parameters. This is a generic filter that cover cases that may not have
-been explicitly addressed with a more specific commit to avoid control
-characters in the psk parameter.
-
-Signed-off-by: Paul Stewart <pstew@google.com>
----
- src/utils/common.c | 11 +++++++++++
- src/utils/common.h | 1 +
- wpa_supplicant/config.c | 15 +++++++++++++--
- 3 files changed, 25 insertions(+), 2 deletions(-)
-
-diff --git a/src/utils/common.c b/src/utils/common.c
-index 27b7c02..9856463 100644
---- a/src/utils/common.c
-+++ b/src/utils/common.c
-@@ -709,6 +709,17 @@ int has_ctrl_char(const u8 *data, size_t len)
- }
-
-
-+int has_newline(const char *str)
-+{
-+ while (*str) {
-+ if (*str == '\n' || *str == '\r')
-+ return 1;
-+ str++;
-+ }
-+ return 0;
-+}
-+
-+
- size_t merge_byte_arrays(u8 *res, size_t res_len,
- const u8 *src1, size_t src1_len,
- const u8 *src2, size_t src2_len)
-diff --git a/src/utils/common.h b/src/utils/common.h
-index a972240..d19927b 100644
---- a/src/utils/common.h
-+++ b/src/utils/common.h
-@@ -489,6 +489,7 @@ const char * wpa_ssid_txt(const u8 *ssid, size_t ssid_len);
- char * wpa_config_parse_string(const char *value, size_t *len);
- int is_hex(const u8 *data, size_t len);
- int has_ctrl_char(const u8 *data, size_t len);
-+int has_newline(const char *str);
- size_t merge_byte_arrays(u8 *res, size_t res_len,
- const u8 *src1, size_t src1_len,
- const u8 *src2, size_t src2_len);
-diff --git a/wpa_supplicant/config.c b/wpa_supplicant/config.c
-index fdd9643..eb97cd5 100644
---- a/wpa_supplicant/config.c
-+++ b/wpa_supplicant/config.c
-@@ -2699,8 +2699,19 @@ char * wpa_config_get(struct wpa_ssid *ssid, const char *var)
-
- for (i = 0; i < NUM_SSID_FIELDS; i++) {
- const struct parse_data *field = &ssid_fields[i];
-- if (os_strcmp(var, field->name) == 0)
-- return field->writer(field, ssid);
-+ if (os_strcmp(var, field->name) == 0) {
-+ char *ret = field->writer(field, ssid);
-+
-+ if (ret && has_newline(ret)) {
-+ wpa_printf(MSG_ERROR,
-+ "Found newline in value for %s; not returning it",
-+ var);
-+ os_free(ret);
-+ ret = NULL;
-+ }
-+
-+ return ret;
-+ }
- }
-
- return NULL;
---
-1.9.1
-
diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch b/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch
deleted file mode 100644
index 2dd38fee31..0000000000
--- a/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch
+++ /dev/null
@@ -1,62 +0,0 @@
-From b166cd84a77a6717be9600bf95378a0055d6f5a5 Mon Sep 17 00:00:00 2001
-From: Jouni Malinen <jouni@qca.qualcomm.com>
-Date: Tue, 5 Apr 2016 23:33:10 +0300
-Subject: [PATCH 4/5] Reject SET_CRED commands with newline characters in the
- string values
-
-Most of the cred block parameters are written as strings without
-filtering and if there is an embedded newline character in the value,
-unexpected configuration file data might be written.
-
-This fixes an issue where wpa_supplicant could have updated the
-configuration file cred parameter with arbitrary data from the control
-interface or D-Bus interface. While those interfaces are supposed to be
-accessible only for trusted users/applications, it may be possible that
-an untrusted user has access to a management software component that
-does not validate the credential value before passing it to
-wpa_supplicant.
-
-This could allow such an untrusted user to inject almost arbitrary data
-into the configuration file. Such configuration file could result in
-wpa_supplicant trying to load a library (e.g., opensc_engine_path,
-pkcs11_engine_path, pkcs11_module_path, load_dynamic_eap) from user
-controlled location when starting again. This would allow code from that
-library to be executed under the wpa_supplicant process privileges.
-
-Signed-off-by: Jouni Malinen <jouni@qca.qualcomm.com>
----
- wpa_supplicant/config.c | 9 ++++++++-
- 1 file changed, 8 insertions(+), 1 deletion(-)
-
-diff --git a/wpa_supplicant/config.c b/wpa_supplicant/config.c
-index eb97cd5..69152ef 100644
---- a/wpa_supplicant/config.c
-+++ b/wpa_supplicant/config.c
-@@ -2896,6 +2896,8 @@ int wpa_config_set_cred(struct wpa_cred *cred, const char *var,
-
- if (os_strcmp(var, "password") == 0 &&
- os_strncmp(value, "ext:", 4) == 0) {
-+ if (has_newline(value))
-+ return -1;
- str_clear_free(cred->password);
- cred->password = os_strdup(value);
- cred->ext_password = 1;
-@@ -2946,9 +2948,14 @@ int wpa_config_set_cred(struct wpa_cred *cred, const char *var,
- }
-
- val = wpa_config_parse_string(value, &len);
-- if (val == NULL) {
-+ if (val == NULL ||
-+ (os_strcmp(var, "excluded_ssid") != 0 &&
-+ os_strcmp(var, "roaming_consortium") != 0 &&
-+ os_strcmp(var, "required_roaming_consortium") != 0 &&
-+ has_newline(val))) {
- wpa_printf(MSG_ERROR, "Line %d: invalid field '%s' string "
- "value '%s'.", line, var, value);
-+ os_free(val);
- return -1;
- }
-
---
-1.9.1
-
diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch b/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch
deleted file mode 100644
index 5f42aa9219..0000000000
--- a/gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch
+++ /dev/null
@@ -1,50 +0,0 @@
-From 2a3f56502b52375c3bf113cf92adfa99bad6b488 Mon Sep 17 00:00:00 2001
-From: Jouni Malinen <jouni@qca.qualcomm.com>
-Date: Tue, 5 Apr 2016 23:55:48 +0300
-Subject: [PATCH 5/5] Reject SET commands with newline characters in the
- string values
-
-Many of the global configuration parameters are written as strings
-without filtering and if there is an embedded newline character in the
-value, unexpected configuration file data might be written.
-
-This fixes an issue where wpa_supplicant could have updated the
-configuration file global parameter with arbitrary data from the control
-interface or D-Bus interface. While those interfaces are supposed to be
-accessible only for trusted users/applications, it may be possible that
-an untrusted user has access to a management software component that
-does not validate the value of a parameter before passing it to
-wpa_supplicant.
-
-This could allow such an untrusted user to inject almost arbitrary data
-into the configuration file. Such configuration file could result in
-wpa_supplicant trying to load a library (e.g., opensc_engine_path,
-pkcs11_engine_path, pkcs11_module_path, load_dynamic_eap) from user
-controlled location when starting again. This would allow code from that
-library to be executed under the wpa_supplicant process privileges.
-
-Signed-off-by: Jouni Malinen <jouni@qca.qualcomm.com>
----
- wpa_supplicant/config.c | 6 ++++++
- 1 file changed, 6 insertions(+)
-
-diff --git a/wpa_supplicant/config.c b/wpa_supplicant/config.c
-index 69152ef..d9a1603 100644
---- a/wpa_supplicant/config.c
-+++ b/wpa_supplicant/config.c
-@@ -3764,6 +3764,12 @@ static int wpa_global_config_parse_str(const struct global_parse_data *data,
- return -1;
- }
-
-+ if (has_newline(pos)) {
-+ wpa_printf(MSG_ERROR, "Line %d: invalid %s value with newline",
-+ line, data->name);
-+ return -1;
-+ }
-+
- tmp = os_strdup(pos);
- if (tmp == NULL)
- return -1;
---
-1.9.1
-
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 30b0bdd22f..26a9113297 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -3744,6 +3744,34 @@ routines such as routines for numerical integration and optimization.")
(define-public python2-scipy
(package-with-python2 python-scipy))
+(define-public python-socksipy-branch
+ (package
+ (name "python-socksipy-branch")
+ (version "1.01")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "SocksiPy-branch" version))
+ (sha256
+ (base32
+ "01l41v4g7fy9fzvinmjxy6zcbhgqaif8dhdqm4w90fwcw9h51a8p"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f)) ; There are no tests
+ (home-page "https://code.google.com/archive/p/socksipy-branch/")
+ (synopsis "Python SOCKS module")
+ (description
+ "SocksiPy - A Python SOCKS client module. It provides a
+socket-like interface that supports connections to any TCP
+service through the use of a SOCKS4, SOCKS5 or HTTP proxy.
+The original version was developed by Dan Haim, this is a
+branch created by Mario Vilas to address some open issues,
+as the original project seems to have been abandoned circa 2007.")
+ (license license:bsd-3)))
+
+(define-public python2-socksipy-branch
+ (package-with-python2 python-socksipy-branch))
+
(define-public python-sqlalchemy
(package
(name "python-sqlalchemy")
@@ -5876,19 +5904,18 @@ object to help create WSGI responses.")
(define-public python-xlrd
(package
(name "python-xlrd")
- (version "0.9.4")
+ (version "1.0.0")
(source (origin
(method url-fetch)
- (uri (string-append "https://pypi.python.org/packages/source/x/"
- "xlrd/xlrd-" version ".tar.gz"))
+ (uri (pypi-uri "xlrd" version))
(sha256
(base32
- "0wpa55nvidmm5m2qr622dsh3cj46akdk0h3zjgzschcmydck73cf"))))
+ "0s8hjiz01vbhy85xalrz0qlsmd9ypf36zjqrf97hh984spapvy0g"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
- ;; Current test in setup.py does not work as of 0.9.4, so use nose to
+ ;; Current test in setup.py does not work as of 1.0.0, so use nose to
;; run tests instead for now.
(replace 'check (lambda _ (zero? (system* "nosetests")))))))
(native-inputs `(("python-nose" ,python-nose)
diff --git a/gnu/packages/qemu.scm b/gnu/packages/qemu.scm
index aee6a75f0e..9bf8c3afbd 100644
--- a/gnu/packages/qemu.scm
+++ b/gnu/packages/qemu.scm
@@ -76,7 +76,10 @@
version ".tar.bz2"))
(sha256
(base32
- "0lqyz01z90nvxpc3nx4djbci7hx62cwvs5zwd6phssds0sap6vij"))))
+ "0lqyz01z90nvxpc3nx4djbci7hx62cwvs5zwd6phssds0sap6vij"))
+ (patches (search-patches "qemu-CVE-2016-8576.patch"
+ "qemu-CVE-2016-8577.patch"
+ "qemu-CVE-2016-8578.patch"))))
(build-system gnu-build-system)
(arguments
'(;; Running tests in parallel can occasionally lead to failures, like:
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index a80b8f7739..23d22a3721 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -423,13 +423,13 @@ expectations and mocks frameworks.")
(define-public bundler
(package
(name "bundler")
- (version "1.12.5")
+ (version "1.13.2")
(source (origin
(method url-fetch)
(uri (rubygems-uri "bundler" version))
(sha256
(base32
- "1q84xiwm9j771lpmiply0ls9l2bpvl5axn3jblxjvrldh8di2pkc"))))
+ "05gwyhfn103vrmrw13r3n78bcl75mrj82ipsbazcl08wg1bql7x6"))))
(build-system ruby-build-system)
(arguments
'(#:tests? #f)) ; avoid dependency cycles
@@ -2115,7 +2115,7 @@ aware transformations between times in different time zones.")
(define-public ruby-tzinfo-data
(package
(name "ruby-tzinfo-data")
- (version "1.2016.4")
+ (version "1.2016.7")
(source
(origin
(method url-fetch)
@@ -2128,7 +2128,7 @@ aware transformations between times in different time zones.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0jnm8i379hn48cq5n39j7wzm08i0mw73kqzx3cqbxpiwlb1hnz80"))
+ "0vh75hkfmqk4hdjv6nm7acw64izwpnv7slkmh2kj7qlfz133yh9l"))
;; Remove the known test failure.
;; https://github.com/tzinfo/tzinfo-data/issues/10
;; https://bugs.launchpad.net/ubuntu/+source/glibc/+bug/1587128
@@ -3223,14 +3223,14 @@ that TURN is no longer being maintained.")
(define-public ruby-mime-types-data
(package
(name "ruby-mime-types-data")
- (version "3.2016.0221")
+ (version "3.2016.0521")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "mime-types-data" version))
(sha256
(base32
- "05ygjn0nnfh6yp1wsi574jckk95wqg9a6g598wk4svvrkmkrzkpn"))))
+ "04my3746hwa4yvbx1ranhfaqkgf6vavi1kyijjnw8w3dy37vqhkm"))))
(build-system ruby-build-system)
(native-inputs
`(("ruby-hoe" ,ruby-hoe)))
@@ -3467,14 +3467,14 @@ support to both Ruby and JRuby. It uses @code{unf_ext} on CRuby and
(define-public ruby-domain-name
(package
(name "ruby-domain-name")
- (version "0.5.20160310")
+ (version "0.5.20160826")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "domain_name" version))
(sha256
(base32
- "0g1175zspkqhlvl9s11g7p2nbmqpvpxxv02q8csd0ryc81laapys"))))
+ "0rg7gvp45xmb5qz8ydp7ivw05hhplh6k7mbawrpvkysl2c77w5xx"))))
(build-system ruby-build-system)
(arguments
`(#:phases
@@ -4041,14 +4041,14 @@ generation.")
(define-public ruby-sequel
(package
(name "ruby-sequel")
- (version "4.34.0")
+ (version "4.39.0")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "sequel" version))
(sha256
(base32
- "0qscddpfwcajggxvbm4a4jv8kkpn6q056bgdg03km34bz8bis1x1"))))
+ "01zqd6mi9wvhbg76b91k35jppha0c944ar9f816gi400cf9817bg"))))
(build-system ruby-build-system)
(arguments
'(#:tests? #f)) ; Avoid dependency loop with ruby-minitest-hooks.
diff --git a/gnu/packages/samba.scm b/gnu/packages/samba.scm
index d089167312..45fa47b3c8 100644
--- a/gnu/packages/samba.scm
+++ b/gnu/packages/samba.scm
@@ -98,14 +98,14 @@ anywhere.")
(define-public samba
(package
(name "samba")
- (version "4.3.11")
+ (version "4.5.0")
(source (origin
(method url-fetch)
- (uri (string-append "https://www.samba.org/samba/ftp/stable/samba-"
+ (uri (string-append "https://download.samba.org/pub/samba/stable/samba-"
version ".tar.gz"))
(sha256
(base32
- "1v2grwivm6rasz1ganbybs0ikz1lydaniy65kxf1v8rl1qqngach"))))
+ "11mmyqag2i4yy6dikcggw776n0laxxr0rxhry72x5pa6nwws9afk"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@@ -164,14 +164,14 @@ Desktops into Active Directory environments using the winbind daemon.")
(define-public talloc
(package
(name "talloc")
- (version "2.1.7")
+ (version "2.1.8")
(source (origin
(method url-fetch)
(uri (string-append "https://www.samba.org/ftp/talloc/talloc-"
version ".tar.gz"))
(sha256
(base32
- "01m0kzndciyj43z1zd2nc61xqgh9knjv0w7lk1rrrlj8irr4w58r"))))
+ "0c3ihyb0jd8mhvi7gg2mr5w1zl2habx6jlkbyxzyckad2q8lkl92"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@@ -201,14 +201,14 @@ destructors. It is the core memory allocator used in Samba.")
(define-public tevent
(package
(name "tevent")
- (version "0.9.28")
+ (version "0.9.31")
(source (origin
(method url-fetch)
(uri (string-append "https://www.samba.org/ftp/tevent/tevent-"
version ".tar.gz"))
(sha256
(base32
- "0a9ml52jjnzz7qg9z750mavlvs1yibjwrzy4yl55dc95j0vm7n84"))))
+ "1z1bij9gccps34q8zakr1k7k3gpqs25jas20x1hch16qd8jz44sa"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@@ -236,14 +236,14 @@ many event types, including timers, signals, and the classic file descriptor eve
(define-public ldb
(package
(name "ldb")
- (version "1.1.26")
+ (version "1.1.27")
(source (origin
(method url-fetch)
(uri (string-append "https://www.samba.org/ftp/ldb/ldb-"
version ".tar.gz"))
(sha256
(base32
- "1rmjv12pf57vga8s5z9p9d90rlfckc1lqjbcp89r83cq5fkwfhw8"))))
+ "1b1mkl5p8swb67s9aswavhzswlib34hpgsv66zgns009paf2df6d"))))
(build-system gnu-build-system)
(arguments
'(#:phases
diff --git a/gnu/packages/scanner.scm b/gnu/packages/scanner.scm
index 76e11a9516..76817b389f 100644
--- a/gnu/packages/scanner.scm
+++ b/gnu/packages/scanner.scm
@@ -29,15 +29,15 @@
(define-public sane-backends
(package
(name "sane-backends")
- (version "1.0.24")
+ (version "1.0.25")
(source (origin
(method url-fetch)
- (uri (string-append
- "https://alioth.debian.org/frs/download.php/file/3958/"
+ (uri (string-append
+ "https://alioth.debian.org/frs/download.php/file/4146/"
name "-" version ".tar.gz"))
(sha256
(base32
- "0ba68m6bzni54axjk15i51rya7hfsdliwvqyan5msl7iaid0iir7"))))
+ "0b3fvhrxl4l82bf3v0j47ypjv6a0k5lqbgknrq1agpmjca6vmmx4"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@@ -73,4 +73,3 @@ proving access to any raster image scanner hardware (flatbed scanner,
hand-held scanner, video- and still-cameras, frame-grabbers, etc.). The
package contains the library and drivers.")
(license licence:gpl2+))) ; plus linking exception
-
diff --git a/gnu/packages/ssh.scm b/gnu/packages/ssh.scm
index 88bfd062df..c551f18481 100644
--- a/gnu/packages/ssh.scm
+++ b/gnu/packages/ssh.scm
@@ -80,20 +80,6 @@ remote applications.")
(home-page "http://www.libssh.org")
(license license:lgpl2.1+)))
-(define libssh-0.6 ; kept private for use in guile-ssh
- (package (inherit libssh)
- (version "0.6.5")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://red.libssh.org/attachments/"
- "download/121/libssh-"
- version ".tar.xz"))
- (sha256
- (base32
- "0b6wyx6bwbb8jpn8x4rhlrdiqwqrwrs0mxjmrnqykm9kw1ijgm8g"))
- (patches (search-patches
- "libssh-0.6.5-CVE-2016-0739.patch"))))))
-
(define-public libssh2
(package
(name "libssh2")
@@ -209,7 +195,7 @@ Additionally, various channel-specific options can be negotiated.")
(define-public guile-ssh
(package
(name "guile-ssh")
- (version "0.9.0")
+ (version "0.10.1")
(source (origin
;; ftp://memory-heap.org/software/guile-ssh/guile-ssh-VERSION.tar.gz
;; exists, but the server appears to be too slow and unreliable.
@@ -220,34 +206,29 @@ Additionally, various channel-specific options can be negotiated.")
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "04zs1cykwdyj51ag62ymrkgsja9dbhbaaglkvbfbac0bkxl2ir6d"))))
+ "0ky77kr7rnkhbq938bir61mlr8b86lfjcjjb1bxx1y1fhimsiz72"))))
(build-system gnu-build-system)
(arguments
- '(#:phases (alist-cons-after
- 'unpack 'autoreconf
- (lambda* (#:key inputs #:allow-other-keys)
- (chmod "doc/version.texi" #o777) ;make it writable
- (zero? (system* "autoreconf" "-vfi")))
- (alist-cons-after
- 'install 'fix-libguile-ssh-file-name
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (libdir (string-append out "/lib"))
- (guiledir (string-append out
- "/share/guile/site/2.0")))
- (substitute* (find-files guiledir ".scm")
- (("\"libguile-ssh\"")
- (string-append "\"" libdir "/libguile-ssh\"")))
-
- ;; Make sure it works.
- (setenv "GUILE_LOAD_PATH" guiledir)
- (setenv "GUILE_LOAD_COMPILED_PATH" guiledir)
- (zero?
- (system* "guile" "-c" "(use-modules (ssh session))"))))
- %standard-phases))
- #:configure-flags (list (string-append "--with-guilesitedir="
- (assoc-ref %outputs "out")
- "/share/guile/site/2.0"))
+ '(#:phases (modify-phases %standard-phases
+ (add-after 'unpack 'autoreconf
+ (lambda* (#:key inputs #:allow-other-keys)
+ (chmod "doc/version.texi" #o777) ;make it writable
+ (zero? (system* "autoreconf" "-vfi"))))
+ (add-before 'build 'fix-libguile-ssh-file-name
+ (lambda* (#:key outputs #:allow-other-keys)
+ ;; Build and install libguile-ssh.so so that we can use
+ ;; its absolute file name in .scm files, before we build
+ ;; the .go files.
+ (and (zero? (system* "make" "install"
+ "-C" "libguile-ssh"
+ "-j" (number->string
+ (parallel-job-count))))
+ (let* ((out (assoc-ref outputs "out"))
+ (libdir (string-append out "/lib")))
+ (substitute* (find-files "." "\\.scm$")
+ (("\"libguile-ssh\"")
+ (string-append "\"" libdir "/libguile-ssh\"")))
+ #t)))))
;; Tests are not parallel-safe.
#:parallel-tests? #f))
@@ -258,7 +239,7 @@ Additionally, various channel-specific options can be negotiated.")
("pkg-config" ,pkg-config)
("which" ,which)))
(inputs `(("guile" ,guile-2.0)
- ("libssh" ,libssh-0.6)
+ ("libssh" ,libssh)
("libgcrypt" ,libgcrypt)))
(synopsis "Guile bindings to libssh")
(description
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 79fb0427fd..0748b5d860 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -432,14 +432,14 @@ and operations on them using LAPACK and SuiteSparse.")
(define-public r-mgcv
(package
(name "r-mgcv")
- (version "1.8-14")
+ (version "1.8-15")
(source
(origin
(method url-fetch)
(uri (cran-uri "mgcv" version))
(sha256
(base32
- "0ly9x23q6kd7aqrsb8qjsj8jc597h3068iaqjmkkdv56r5dln29f"))))
+ "05xzmsx51y92c0r0yihac8m9d3v1sqnn8ahcgm3q75j8z6zybsjs"))))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/mgcv")
(synopsis "Mixed generalised additive model computation")
diff --git a/gnu/packages/tbb.scm b/gnu/packages/tbb.scm
index 43e9288fee..6a668801ff 100644
--- a/gnu/packages/tbb.scm
+++ b/gnu/packages/tbb.scm
@@ -28,16 +28,16 @@
(define-public tbb
(package
(name "tbb")
- (version "2017")
+ (version "2017_20160916")
(source (origin
(method url-fetch)
(uri (string-append
"https://www.threadingbuildingblocks.org/sites/default"
"/files/software_releases/source/"
- "tbb" version "_20160722oss_src.tgz"))
+ "tbb" version "oss_src.tgz"))
(sha256
(base32
- "038rmv3s8si51bjrzwyv8ldqw742fjjdfayi8pmjaq5zw32b8pzx"))
+ "1i3zy87gyzw22fvajm039w6g822qzqn7jbmznc8y8c57qpqnf330"))
(modules '((guix build utils)))
(snippet
'(substitute* "build/common.inc"
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 243a8fb44e..c13eec2723 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -1440,7 +1440,7 @@ be used for realtime video capture via Linux-specific APIs.")
(define-public obs
(package
(name "obs")
- (version "0.15.4")
+ (version "0.16.2")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/jp9000/obs-studio"
@@ -1448,7 +1448,7 @@ be used for realtime video capture via Linux-specific APIs.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "11bqk0jpp8fp24j0rkjgrv3fdi3xnjyk4wq55j803cg84mn4zsp0"))))
+ "0p2grxyaf79hb3nlja23xp7b2vc1w18llvzcyhnjn2lhwfjabcgm"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ; no tests
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 4901f116e3..cabf1e6b49 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -45,6 +45,7 @@
#:use-module (guix build-system cmake)
#:use-module (guix build-system r)
#:use-module (guix build-system trivial)
+ #:use-module (guix build-system python)
#:use-module (gnu packages)
#:use-module (gnu packages apr)
#:use-module (gnu packages documentation)
@@ -121,14 +122,14 @@ and its related documentation.")
(define-public nginx
(package
(name "nginx")
- (version "1.10.1")
+ (version "1.11.4")
(source (origin
(method url-fetch)
- (uri (string-append "http://nginx.org/download/nginx-"
+ (uri (string-append "https://nginx.org/download/nginx-"
version ".tar.gz"))
(sha256
(base32
- "00d8hxj8453c7989qd7z4f1mjp0k3ib8k29i1qyf11b4ar35ilqz"))))
+ "0fvb09ycxz3xnyynav6ybj6miwh9kv8jcb2vzrmvqhzn8cgiq8h6"))))
(build-system gnu-build-system)
(inputs `(("pcre" ,pcre)
("openssl" ,openssl)
@@ -140,7 +141,8 @@ and its related documentation.")
(add-before 'configure 'patch-/bin/sh
(lambda _
(substitute* "auto/feature"
- (("/bin/sh") (which "bash")))))
+ (("/bin/sh") (which "bash")))
+ #t))
(replace 'configure
(lambda* (#:key outputs #:allow-other-keys)
(let ((flags
@@ -186,7 +188,7 @@ and its related documentation.")
(string-append share "/conf"))
(rename-file (string-append out "/html")
(string-append share "/html"))))))))
- (home-page "http://nginx.org")
+ (home-page "https://nginx.org")
(synopsis "HTTP and reverse proxy server")
(description
"Nginx (\"engine X\") is a high-performance web and reverse proxy server
@@ -3147,6 +3149,34 @@ http://opensearch.a9.com} compatible search engines.")
their web site.")
(home-page "http://search.cpan.org/~gaas/WWW-RobotRules/")))
+(define-public python-feedparser
+ (package
+ (name "python-feedparser")
+ (version "5.2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "feedparser" version ".tar.bz2"))
+ (sha256
+ (base32
+ "00hb4qg2am06g81mygfi1jsbx8830024jm45g6qp9g8fr6am91yf"))))
+ (build-system python-build-system)
+ (home-page
+ "https://github.com/kurtmckee/feedparser")
+ (synopsis "Parse feeds in Python")
+ (description
+ "Universal feed parser which handles RSS 0.9x, RSS 1.0, RSS 2.0,
+CDF, Atom 0.3, and Atom 1.0 feeds.")
+ (license (list l:bsd-2 ; source code
+ l:freebsd-doc)))) ; documentation
+
+(define-public python2-feedparser
+ (let ((base (package-with-python2
+ (strip-python2-variant python-feedparser))))
+ (package (inherit base)
+ (native-inputs
+ `(("python2-setuptools" ,python2-setuptools))))))
+
(define-public r-httpuv
(package
(name "r-httpuv")
diff --git a/gnu/services/xorg.scm b/gnu/services/xorg.scm
index d098d831e1..ccac677202 100644
--- a/gnu/services/xorg.scm
+++ b/gnu/services/xorg.scm
@@ -108,6 +108,7 @@ Section \"Files\"
FontPath \"" font-adobe75dpi "/share/fonts/X11/75dpi\"
ModulePath \"" xf86-video-vesa "/lib/xorg/modules/drivers\"
ModulePath \"" xf86-video-fbdev "/lib/xorg/modules/drivers\"
+ ModulePath \"" xf86-video-ati "/lib/xorg/modules/drivers\"
ModulePath \"" xf86-video-modesetting "/lib/xorg/modules/drivers\"
ModulePath \"" xf86-video-cirrus "/lib/xorg/modules/drivers\"
ModulePath \"" xf86-video-intel "/lib/xorg/modules/drivers\"
@@ -145,6 +146,7 @@ EndSection
(define %default-xorg-modules
(list xf86-video-vesa
xf86-video-fbdev
+ xf86-video-ati
xf86-video-modesetting
xf86-video-cirrus
xf86-video-intel