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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 15:25:55 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:41 +0100
commit902fb15d92da67fd3b4879b4ed73a7ae1879569e (patch)
tree515658dd4a338afb80c5ad4fdd9227dc02582f49 /gnu
parentcd215877a060de78e1b5f39df89088bf98bdccff (diff)
downloadgnu-guix-902fb15d92da67fd3b4879b4ed73a7ae1879569e.tar
gnu-guix-902fb15d92da67fd3b4879b4ed73a7ae1879569e.tar.gz
gnu: Add r-genomicfiles.
* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm33
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e5c3bd0c86..8b90c3bff0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9483,6 +9483,39 @@ pathways and GO terms. These funtions and data are also useful for gene set
analysis using other methods.")
(license license:gpl2+)))
+(define-public r-genomicfiles
+ (package
+ (name "r-genomicfiles")
+ (version "1.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicFiles" version))
+ (sha256
+ (base32
+ "0r0wmrs5jycf1kckhnc2sgjmp336srlcjdkpbb1ymm7kazdd0s9n"))))
+ (properties `((upstream-name . "GenomicFiles")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/GenomicFiles")
+ (synopsis "Distributed computing by file or by range")
+ (description
+ "This package provides infrastructure for parallel computations
+distributed by file or by range. User defined mapper and reducer functions
+provide added flexibility for data combination and manipulation.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")