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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-05-23 16:57:16 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-05-31 16:29:37 +0200 |
| commit | 64efa3078a487a059ada076519d94411685727e9 (patch) | |
| tree | 840c39015495281e90557abdfa30e42b2aac1e62 /gnu | |
| parent | aa3b391092aa50b4f29cd9e548042beed062b9af (diff) | |
| download | gnu-guix-64efa3078a487a059ada076519d94411685727e9.tar gnu-guix-64efa3078a487a059ada076519d94411685727e9.tar.gz | |
gnu: Add r-genomationdata.
* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 11e74c6d2c..94ae4455b8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4776,6 +4776,34 @@ genomic feature data as long as it has minimal information on the locations of genomic intervals. In addition, it can use BAM or BigWig files as input.") (license license:artistic2.0))) +(define-public r-genomationdata + (package + (name "r-genomationdata") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://bioconductor.org/packages/" + "release/data/experiment/src/contrib/" + "genomationData_" version ".tar.gz")) + (sha256 + (base32 + "1xzq2j722d8lcn5bc3aq3yb34xwis2d0bpsf6jsq4xw1bg0bsy79")))) + (build-system r-build-system) + ;; As this package provides little more than large data files, it doesn't + ;; make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "http://bioinformatics.mdc-berlin.de/genomation/") + (synopsis "Experimental data for use with the genomation package") + (description + "This package contains experimental genetic data for use with the +genomation package. Included are Chip Seq, Methylation and Cage data, +downloaded from Encode.") + (license license:gpl3+))) + (define-public r-org-hs-eg-db (package (name "r-org-hs-eg-db") |