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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-07-02 15:53:47 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-07-08 17:05:00 +0200 |
| commit | 5bdda30b32676528bcfa0a169c30237fabaa4607 (patch) | |
| tree | 9c68cdda62913370fabe62026c344f55466317cc /gnu/packages | |
| parent | 80ea7526dbe5cfea39597fe440d65f53e083eb6f (diff) | |
| download | gnu-guix-5bdda30b32676528bcfa0a169c30237fabaa4607.tar gnu-guix-5bdda30b32676528bcfa0a169c30237fabaa4607.tar.gz | |
gnu: samtools: Install headers.
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase
"install-headers" to install header files.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 17 |
1 files changed, 16 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 03bb3599d2..f6349cfb8f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1774,6 +1774,10 @@ distribution, coverage uniformity, strand specificity, etc.") ;; systems. #:tests? ,(string=? (or (%current-system) (%current-target-system)) "x86_64-linux") + #:modules ((ice-9 ftw) + (ice-9 regex) + (guix build gnu-build-system) + (guix build utils)) #:make-flags (list "LIBCURSES=-lncurses" (string-append "prefix=" (assoc-ref %outputs "out"))) #:phases @@ -1798,7 +1802,18 @@ distribution, coverage uniformity, strand specificity, etc.") (let ((lib (string-append (assoc-ref outputs "out") "/lib"))) (mkdir-p lib) (copy-file "libbam.a" (string-append lib "/libbam.a")))) - (alist-delete 'configure %standard-phases))))) + (alist-cons-after + 'install 'install-headers + (lambda* (#:key outputs #:allow-other-keys) + (let ((include (string-append (assoc-ref outputs "out") + "/include/samtools/"))) + (mkdir-p include) + (for-each (lambda (file) + (copy-file file (string-append include + (basename file)))) + (scandir "." (lambda (name) (string-match "\\.h$" name)))) + #t)) + (alist-delete 'configure %standard-phases)))))) (native-inputs `(("pkg-config" ,pkg-config))) (inputs `(("ncurses" ,ncurses) ("perl" ,perl) |