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| author | Pjotr Prins <pjotr.public01@thebird.nl> | 2017-05-18 05:59:47 +0000 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2017-05-18 14:22:03 +0200 |
| commit | 2b18ad054cf5a09582bc96ac7755452e7a5924e1 (patch) | |
| tree | b4072e285fa40bd37cf79feafd4fc4822e896ac0 /gnu/packages/bioinformatics.scm | |
| parent | f69c29f76d250897f70f6e189dfc2b0e4b8e4fa3 (diff) | |
| download | gnu-guix-2b18ad054cf5a09582bc96ac7755452e7a5924e1.tar gnu-guix-2b18ad054cf5a09582bc96ac7755452e7a5924e1.tar.gz | |
gnu: Add gemma.
* gnu/packages/bioinformatics.scm (gemma): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9f5d8141d8..d35b51d852 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2696,6 +2696,46 @@ comment or quality sections.") (supported-systems '("x86_64-linux")) (license license:expat)))) +(define-public gemma + (package + (name "gemma") + (version "0.96") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/xiangzhou/GEMMA/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "055ynn16gd12pf78n4vr2a9jlwsbwzajpdnf2y2yilg1krfff222")))) + (inputs + `(("gsl" ,gsl) + ("lapack" ,lapack) + ("zlib" ,zlib))) + (build-system gnu-build-system) + (arguments + `(#:make-flags '("FORCE_DYNAMIC=1") ; use shared libs + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-before 'build 'bin-mkdir + (lambda _ + (mkdir-p "bin"))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (install-file "bin/gemma" + (string-append + out "/bin")))))) + #:tests? #f)) ; no tests included yet + (home-page "https://github.com/xiangzhou/GEMMA") + (synopsis "Tool for genome-wide efficient mixed model association") + (description + "Genome-wide Efficient Mixed Model Association (GEMMA) provides a +standard linear mixed model resolver with application in genome-wide +association studies (GWAS).") + (license license:gpl3))) + (define-public grit (package (name "grit") |