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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 22:48:10 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 22:48:53 +0100 |
| commit | fd4c7a098a508c1de7a8513c0f3d88d5a0df12e7 (patch) | |
| tree | 636624ba96d379a00bb5c7f6b4c737d88c0990f1 /gnu/packages/bioinformatics.scm | |
| parent | 55a0a3c853dc9177afeb9d438f3e4bdc1a1379e7 (diff) | |
| download | gnu-guix-fd4c7a098a508c1de7a8513c0f3d88d5a0df12e7.tar gnu-guix-fd4c7a098a508c1de7a8513c0f3d88d5a0df12e7.tar.gz | |
gnu: Add python-velocyto.
* gnu/packages/bioinformatics.scm (python-velocyto): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index da0edcdf40..9b0a4314b9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14209,3 +14209,34 @@ short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.") (license license:gpl2+))) + +(define-public python-velocyto + (package + (name "python-velocyto") + (version "0.17.17") + (source + (origin + (method url-fetch) + (uri (pypi-uri "velocyto" version)) + (sha256 + (base32 + "0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs")))) + (build-system python-build-system) + (propagated-inputs + `(("python-click" ,python-click) + ("python-cython" ,python-cython) + ("python-h5py" ,python-h5py) + ("python-loompy" ,python-loompy) + ("python-matplotlib" ,python-matplotlib) + ("python-numba" ,python-numba) + ("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ("python-pysam" ,python-pysam) + ("python-scikit-learn" ,python-scikit-learn) + ("python-scipy" ,python-scipy))) + (home-page "https://github.com/velocyto-team/velocyto.py") + (synopsis "RNA velocity analysis for single cell RNA-seq data") + (description + "Velocyto is a library for the analysis of RNA velocity. Velocyto +includes a command line tool and an analysis pipeline.") + (license license:bsd-2))) |