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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:30:30 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:30:30 +0100 |
| commit | 0c792ffbd1fe52533676a501bfc54c2a33a69351 (patch) | |
| tree | f64ef5b6adbc4819cfcf2378dadcc1372a58ee75 /gnu/packages/bioinformatics.scm | |
| parent | b7d93cf5087642103ae4a1f19ae38876d46c2b6c (diff) | |
| download | gnu-guix-0c792ffbd1fe52533676a501bfc54c2a33a69351.tar gnu-guix-0c792ffbd1fe52533676a501bfc54c2a33a69351.tar.gz | |
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 0 insertions, 32 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index efe4c9b2f6..7243ee1729 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) based on the knownGene track.") (license license:artistic2.0))) -(define-public r-bsgenome-celegans-ucsc-ce10 - (package - (name "r-bsgenome-celegans-ucsc-ce10") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Celegans.UCSC.ce10_" - version ".tar.gz")) - (sha256 - (base32 - "1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk")))) - (properties - `((upstream-name . "BSgenome.Celegans.UCSC.ce10"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/") - (synopsis "Full genome sequences for Worm") - (description - "This package provides full genome sequences for Caenorhabditis -elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings -objects.") - (license license:artistic2.0))) - (define-public r-bsgenome-dmelanogaster-ucsc-dm3 (package (name "r-bsgenome-dmelanogaster-ucsc-dm3") |