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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-03-01 19:41:41 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-03-03 21:27:46 +0100 |
| commit | b28c803708d41c4a5323e31e01f7b6044fcc6dda (patch) | |
| tree | db5cd12794a0ef879110b7619441bbdb2c717408 /gnu/packages/bioinformatics.scm | |
| parent | 10645b9212d5eff74132edf60c90c3eb099a139f (diff) | |
| download | gnu-guix-b28c803708d41c4a5323e31e01f7b6044fcc6dda.tar gnu-guix-b28c803708d41c4a5323e31e01f7b6044fcc6dda.tar.gz | |
gnu: Add java-biojava-phylo.
* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d64cda2340..fbb3264ef5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12176,3 +12176,39 @@ application development for bioinformatics. This package provides the core libraries.") (license license:lgpl2.1+))) + +(define-public java-biojava-phylo + (package (inherit java-biojava-core) + (name "java-biojava-phylo") + (build-system ant-build-system) + (arguments + `(#:jdk ,icedtea-8 + #:jar-name "biojava-phylo.jar" + #:source-dir "biojava-phylo/src/main/java/" + #:test-dir "biojava-phylo/src/test" + #:phases + (modify-phases %standard-phases + (add-before 'build 'copy-resources + (lambda _ + (copy-recursively "biojava-phylo/src/main/resources" + "build/classes") + #t)) + (add-before 'check 'copy-test-resources + (lambda _ + (copy-recursively "biojava-phylo/src/test/resources" + "build/test-classes") + #t))))) + (propagated-inputs + `(("java-log4j-api" ,java-log4j-api) + ("java-log4j-core" ,java-log4j-core) + ("java-slf4j-api" ,java-slf4j-api) + ("java-slf4j-simple" ,java-slf4j-simple) + ("java-biojava-core" ,java-biojava-core) + ("java-forester" ,java-forester))) + (native-inputs + `(("java-junit" ,java-junit) + ("java-hamcrest-core" ,java-hamcrest-core))) + (home-page "http://biojava.org") + (synopsis "Biojava interface to the forester phylogenomics library") + (description "The phylo module provides a biojava interface layer to the +forester phylogenomics library for constructing phylogenetic trees."))) |