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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-05-10 13:12:07 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-05-10 13:31:03 +0200 |
| commit | 5865606459d018758be55f31f8fa4b1f849fa74e (patch) | |
| tree | 032257b9d3881c251a6354567307301046e08e94 /gnu/packages/bioconductor.scm | |
| parent | 144415391344ca7118268889867a00a5e5b5b466 (diff) | |
| download | gnu-guix-5865606459d018758be55f31f8fa4b1f849fa74e.tar gnu-guix-5865606459d018758be55f31f8fa4b1f849fa74e.tar.gz | |
gnu: Add r-rhisat2.
* gnu/packages/bioconductor.scm (r-rhisat2): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fce157a516..e534b33555 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -24,6 +24,7 @@ #:use-module (guix download) #:use-module (guix build-system r) #:use-module (gnu packages) + #:use-module (gnu packages base) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages cran) #:use-module (gnu packages compression) @@ -4433,3 +4434,31 @@ at the start or end of each splice variant. The software includes functions for splice event prediction, quantification, visualization and interpretation.") (license license:artistic2.0))) + +(define-public r-rhisat2 + (package + (name "r-rhisat2") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Rhisat2" version)) + (sha256 + (base32 + "1d1gwl8l2z8kzfvkp1s8vfrh6jbq9ha25dplpf9g62qqa8a46hga")))) + (properties `((upstream-name . "Rhisat2"))) + (build-system r-build-system) + (native-inputs + `(("which" ,which))) + (propagated-inputs + `(("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-sgseq" ,r-sgseq))) + (home-page "https://github.com/fmicompbio/Rhisat2") + (synopsis "R Wrapper for HISAT2 sequence aligner") + (description + "This package provides an R interface to the HISAT2 spliced short-read +aligner by Kim et al. (2015). The package contains wrapper functions to +create a genome index and to perform the read alignment to the generated +index.") + (license license:gpl3))) |