Merge branch 'master' into staging

1 files changed, 45 insertions, 28 deletions

diff --git a/gnu/local.mk b/gnu/local.mk
index b2f34a42d5..ce110516be 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -9,7 +9,7 @@
 # Copyright © 2016 Adonay "adfeno" Felipe Nogueira <https://libreplanet.org/wiki/User:Adfeno> <adfeno@openmailbox.org>
 # Copyright © 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
 # Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
-# Copyright © 2016, 2017 Alex Vong <alexvong1995@gmail.com>
+# Copyright © 2016, 2017, 2018 Alex Vong <alexvong1995@gmail.com>
 # Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
 # Copyright © 2016, 2017 Jan Nieuwenhuizen <janneke@gnu.org>
 # Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -17,6 +17,7 @@
 # Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
 # Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
 # Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
+# Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com>
 #
 # This file is part of GNU Guix.
 #
@@ -345,6 +346,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/python.scm			\
   %D%/packages/python-crypto.scm		\
   %D%/packages/python-web.scm			\
+  %D%/packages/toys.scm				\
   %D%/packages/tryton.scm			\
   %D%/packages/qt.scm				\
   %D%/packages/ragel.scm			\
@@ -355,6 +357,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/re2c.scm				\
   %D%/packages/readline.scm			\
   %D%/packages/regex.scm				\
+  %D%/packages/robotics.scm			\
   %D%/packages/rrdtool.scm			\
   %D%/packages/rsync.scm			\
   %D%/packages/ruby.scm				\
@@ -456,6 +459,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/services/desktop.scm			\
   %D%/services/dict.scm				\
   %D%/services/dns.scm				\
+  %D%/services/games.scm			\
   %D%/services/kerberos.scm			\
   %D%/services/lirc.scm				\
   %D%/services/virtualization.scm		\
@@ -576,7 +580,11 @@ dist_patch_DATA =						\
   %D%/packages/patches/chmlib-inttypes.patch			\
   %D%/packages/patches/clang-libc-search-path.patch		\
   %D%/packages/patches/clang-3.8-libc-search-path.patch		\
+  %D%/packages/patches/clang-runtime-asan-build-fixes.patch	\
+  %D%/packages/patches/clang-runtime-esan-build-fixes.patch	\
+  %D%/packages/patches/clementine-remove-crypto++-dependency.patch	\
   %D%/packages/patches/clementine-use-openssl.patch		\
+  %D%/packages/patches/clisp-glibc-2.26.patch			\
   %D%/packages/patches/clisp-remove-failing-test.patch		\
   %D%/packages/patches/clucene-pkgconfig.patch			\
   %D%/packages/patches/clx-remove-demo.patch			\
@@ -593,7 +601,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/crawl-upgrade-saves.patch		\
   %D%/packages/patches/crda-optional-gcrypt.patch		\
   %D%/packages/patches/crossmap-allow-system-pysam.patch	\
-  %D%/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch \
   %D%/packages/patches/clucene-contribs-lib.patch               \
   %D%/packages/patches/cube-nocheck.patch			\
   %D%/packages/patches/cursynth-wave-rand.patch			\
@@ -608,16 +615,17 @@ dist_patch_DATA =						\
   %D%/packages/patches/docbook-xsl-nonrecursive-string-subst.patch	\
   %D%/packages/patches/doc++-include-directives.patch		\
   %D%/packages/patches/doc++-segfault-fix.patch			\
+  %D%/packages/patches/dovecot-CVE-2017-15132.patch		\
   %D%/packages/patches/doxygen-test.patch			\
-  %D%/packages/patches/dtc-format-modifier.patch		\
-  %D%/packages/patches/dtc-32-bits-check.patch			\
   %D%/packages/patches/dvd+rw-tools-add-include.patch 		\
   %D%/packages/patches/eigen-arm-neon-fixes.patch		\
   %D%/packages/patches/elfutils-tests-ptrace.patch		\
   %D%/packages/patches/elixir-disable-failing-tests.patch	\
   %D%/packages/patches/einstein-build.patch			\
+  %D%/packages/patches/emacs-browse-at-remote-cgit-gnu.patch	\
   %D%/packages/patches/emacs-exec-path.patch			\
   %D%/packages/patches/emacs-fix-scheme-indent-function.patch	\
+  %D%/packages/patches/emacs-json-reformat-fix-tests.patch	\
   %D%/packages/patches/emacs-highlight-stages-add-gexp.patch	\
   %D%/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch	\
   %D%/packages/patches/emacs-source-date-epoch.patch		\
@@ -647,6 +655,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/freeimage-CVE-2015-0852.patch		\
   %D%/packages/patches/freeimage-CVE-2016-5684.patch		\
   %D%/packages/patches/freeimage-fix-build-with-gcc-5.patch	\
+  %D%/packages/patches/freetype-CVE-2018-6942.patch		\
   %D%/packages/patches/fuse-overlapping-headers.patch				\
   %D%/packages/patches/gawk-shell.patch				\
   %D%/packages/patches/gcc-arm-bug-71399.patch			\
@@ -654,6 +663,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/gcc-asan-missing-include.patch		\
   %D%/packages/patches/gcc-cross-environment-variables.patch	\
   %D%/packages/patches/gcc-fix-texi2pod.patch			\
+  %D%/packages/patches/gcc-4.9-libsanitizer-fix.patch		\
   %D%/packages/patches/gcc-libsanitizer-fix.patch		\
   %D%/packages/patches/gcc-libvtv-runpath.patch			\
   %D%/packages/patches/gcc-strmov-store-file-names.patch	\
@@ -674,6 +684,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/gegl-CVE-2012-4433.patch			\
   %D%/packages/patches/gemma-intel-compat.patch			\
   %D%/packages/patches/geoclue-config.patch			\
+  %D%/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch \
   %D%/packages/patches/ghc-dont-pass-linker-flags-via-response-files.patch	\
   %D%/packages/patches/ghostscript-no-header-id.patch		\
   %D%/packages/patches/ghostscript-no-header-uuid.patch		\
@@ -714,6 +725,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/gobject-introspection-cc.patch		\
   %D%/packages/patches/gobject-introspection-girepository.patch	\
   %D%/packages/patches/gpm-glibc-2.26.patch			\
+  %D%/packages/patches/gpsbabel-minizip.patch     		\
+  %D%/packages/patches/gpsbabel-qstring.patch     		\
   %D%/packages/patches/graphite2-ffloat-store.patch		\
   %D%/packages/patches/grep-timing-sensitive-test.patch		\
   %D%/packages/patches/groff-source-date-epoch.patch		\
@@ -733,6 +746,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_PATH.patch	\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch \
   %D%/packages/patches/gtkglext-disable-disable-deprecated.patch \
+  %D%/packages/patches/gzdoom-search-in-installed-share.patch	\
   %D%/packages/patches/handbrake-pkg-config-path.patch		\
   %D%/packages/patches/hdf4-architectures.patch 		\
   %D%/packages/patches/hdf4-reproducibility.patch 		\
@@ -751,20 +765,24 @@ dist_patch_DATA =						\
   %D%/packages/patches/higan-remove-march-native-flag.patch	\
   %D%/packages/patches/hubbub-sort-entities.patch		\
   %D%/packages/patches/hurd-fix-eth-multiplexer-dependency.patch        \
+  %D%/packages/patches/hwloc-tests-without-sysfs.patch		\
   %D%/packages/patches/hydra-disable-darcs-test.patch		\
   %D%/packages/patches/icecat-avoid-bundled-libraries.patch	\
   %D%/packages/patches/icecat-bug-1348660-pt5.patch		\
   %D%/packages/patches/icecat-bug-1415133.patch			\
   %D%/packages/patches/icecat-bug-1414945.patch			\
   %D%/packages/patches/icecat-bug-1424373-pt2.patch		\
-  %D%/packages/patches/icecat-bug-1427870-spectre-mitigation.patch	\
-  %D%/packages/patches/icecat-glibc-2.26.patch			\
+  %D%/packages/patches/icecat-use-system-graphite2.patch	\
+  %D%/packages/patches/icecat-use-system-harfbuzz.patch		\
   %D%/packages/patches/id3lib-CVE-2007-4460.patch			\
   %D%/packages/patches/ilmbase-fix-tests.patch			\
   %D%/packages/patches/intltool-perl-compatibility.patch	\
   %D%/packages/patches/isl-0.11.1-aarch64-support.patch	\
   %D%/packages/patches/jacal-fix-texinfo.patch			\
   %D%/packages/patches/java-powermock-fix-java-files.patch		\
+  %D%/packages/patches/java-xerces-bootclasspath.patch	\
+  %D%/packages/patches/java-xerces-build_dont_unzip.patch	\
+  %D%/packages/patches/java-xerces-xjavac_taskdef.patch	\
   %D%/packages/patches/jemalloc-arm-address-bits.patch		\
   %D%/packages/patches/jbig2dec-ignore-testtest.patch		\
   %D%/packages/patches/jq-CVE-2015-8863.patch			\
@@ -781,7 +799,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch	\
   %D%/packages/patches/kobodeluxe-midicon-segmentation-fault.patch	\
   %D%/packages/patches/kobodeluxe-graphics-window-signed-char.patch	\
-  %D%/packages/patches/ktexteditor-5.39.0-autotests-dependencies.patch	\
   %D%/packages/patches/laby-make-install.patch			\
   %D%/packages/patches/lcms-CVE-2016-10165.patch		\
   %D%/packages/patches/ldc-disable-tests.patch			\
@@ -809,11 +826,13 @@ dist_patch_DATA =						\
   %D%/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch	\
   %D%/packages/patches/libevent-2.1-dns-tests.patch		\
   %D%/packages/patches/libevent-2.1-skip-failing-test.patch	\
+  %D%/packages/patches/libexif-CVE-2016-6328.patch		\
   %D%/packages/patches/libexif-CVE-2017-7544.patch		\
   %D%/packages/patches/libgit2-0.25.1-mtime-0.patch		\
   %D%/packages/patches/libgdata-fix-tests.patch			\
   %D%/packages/patches/libgdata-glib-duplicate-tests.patch	\
   %D%/packages/patches/libgnome-encoding.patch			\
+  %D%/packages/patches/libgnomeui-utf8.patch			\
   %D%/packages/patches/libgxps-CVE-2017-11590.patch		\
   %D%/packages/patches/libffi-3.2.1-complex-alpha.patch		\
   %D%/packages/patches/libjxr-fix-function-signature.patch	\
@@ -829,12 +848,16 @@ dist_patch_DATA =						\
   %D%/packages/patches/libsndfile-armhf-type-checks.patch	\
   %D%/packages/patches/libsndfile-CVE-2017-8361-8363-8365.patch	\
   %D%/packages/patches/libsndfile-CVE-2017-8362.patch		\
+  %D%/packages/patches/libsndfile-CVE-2017-12562.patch		\
   %D%/packages/patches/libssh-hostname-parser-bug.patch		\
   %D%/packages/patches/libssh2-fix-build-failure-with-gcrypt.patch	\
   %D%/packages/patches/libtar-CVE-2013-4420.patch 		\
   %D%/packages/patches/libtasn1-CVE-2017-10790.patch		\
+  %D%/packages/patches/libtasn1-CVE-2018-6003.patch		\
   %D%/packages/patches/libtheora-config-guess.patch		\
   %D%/packages/patches/libtirpc-missing-headers.patch		\
+  %D%/packages/patches/libtiff-CVE-2017-9935.patch		\
+  %D%/packages/patches/libtiff-CVE-2017-18013.patch		\
   %D%/packages/patches/libtool-skip-tests2.patch		\
   %D%/packages/patches/libusb-0.1-disable-tests.patch		\
   %D%/packages/patches/libusb-for-axoloti.patch			\
@@ -862,12 +885,11 @@ dist_patch_DATA =						\
   %D%/packages/patches/lua51-pkgconfig.patch                    \
   %D%/packages/patches/lua-liblua-so.patch                      \
   %D%/packages/patches/luajit-no_ldconfig.patch			\
-  %D%/packages/patches/luajit-symlinks.patch			\
   %D%/packages/patches/luit-posix.patch				\
   %D%/packages/patches/luminance-hdr-qt-printer.patch		\
   %D%/packages/patches/lvm2-static-link.patch			\
   %D%/packages/patches/lxsession-use-gapplication.patch         \
-  %D%/packages/patches/lxterminal-CVE-2016-10369.patch		\
+  %D%/packages/patches/mailutils-uninitialized-memory.patch	\
   %D%/packages/patches/make-impure-dirs.patch			\
   %D%/packages/patches/mars-install.patch			\
   %D%/packages/patches/mars-sfml-2.3.patch			\
@@ -893,6 +915,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/mozjs38-version-detection.patch		\
   %D%/packages/patches/mumps-build-parallelism.patch		\
   %D%/packages/patches/mupdf-build-with-latest-openjpeg.patch	\
+  %D%/packages/patches/mupdf-CVE-2017-17858.patch		\
   %D%/packages/patches/mupen64plus-ui-console-notice.patch	\
   %D%/packages/patches/mutt-store-references.patch		\
   %D%/packages/patches/net-tools-bitrot.patch			\
@@ -903,7 +926,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/netsurf-longer-test-timeout.patch	\
   %D%/packages/patches/nfs-utils-missing-headers.patch		\
   %D%/packages/patches/ngircd-handle-zombies.patch		\
-  %D%/packages/patches/ninja-zero-mtime.patch			\
   %D%/packages/patches/nss-increase-test-timeout.patch		\
   %D%/packages/patches/nss-pkgconfig.patch			\
   %D%/packages/patches/nvi-assume-preserve-path.patch		\
@@ -917,11 +939,12 @@ dist_patch_DATA =						\
   %D%/packages/patches/ocaml-graph-honor-source-date-epoch.patch	\
   %D%/packages/patches/omake-fix-non-determinism.patch	\
   %D%/packages/patches/ola-readdir-r.patch			\
-  %D%/packages/patches/openscenegraph-ffmpeg3.patch             \
+  %D%/packages/patches/opencascade-oce-glibc-2.26.patch		\
   %D%/packages/patches/openexr-missing-samples.patch		\
   %D%/packages/patches/openfoam-4.1-cleanup.patch			\
   %D%/packages/patches/openldap-CVE-2017-9287.patch		\
   %D%/packages/patches/openocd-nrf52.patch			\
+  %D%/packages/patches/openscenegraph-ffmpeg3.patch             \
   %D%/packages/patches/openssl-runpath.patch			\
   %D%/packages/patches/openssl-1.1.0-c-rehash-in.patch		\
   %D%/packages/patches/openssl-c-rehash-in.patch		\
@@ -930,7 +953,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/osip-CVE-2017-7853.patch			\
   %D%/packages/patches/ots-no-include-missing-file.patch	\
   %D%/packages/patches/owncloud-disable-updatecheck.patch	\
-  %D%/packages/patches/p7zip-CVE-2016-9296.patch			\
+  %D%/packages/patches/p7zip-CVE-2016-9296.patch		\
+  %D%/packages/patches/p7zip-CVE-2017-17969.patch		\
   %D%/packages/patches/p7zip-remove-unused-code.patch		\
   %D%/packages/patches/patchelf-page-size.patch			\
   %D%/packages/patches/patchelf-rework-for-arm.patch		\
@@ -965,7 +989,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/plink-endian-detection.patch		\
   %D%/packages/patches/plotutils-libpng-jmpbuf.patch		\
   %D%/packages/patches/polkit-drop-test.patch			\
-  %D%/packages/patches/policycoreutils-make-sepolicy-use-python3.patch	\
   %D%/packages/patches/portaudio-audacity-compat.patch		\
   %D%/packages/patches/portmidi-modular-build.patch		\
   %D%/packages/patches/potrace-tests.patch			\
@@ -992,6 +1015,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-3-deterministic-build-info.patch	\
   %D%/packages/patches/python-3-search-paths.patch		\
   %D%/packages/patches/python-3-fix-tests.patch			\
+  %D%/packages/patches/python-axolotl-AES-fix.patch		\
   %D%/packages/patches/python-dendropy-fix-tests.patch		\
   %D%/packages/patches/python-fix-tests.patch			\
   %D%/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch	\
@@ -1010,7 +1034,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-scikit-learn-fix-test-non-determinism.patch	\
   %D%/packages/patches/python-configobj-setuptools.patch	\
   %D%/packages/patches/python-faker-fix-build-32bit.patch	\
-  %D%/packages/patches/python-pandas-skip-failing-tests.patch	\
   %D%/packages/patches/python-paste-remove-website-test.patch	\
   %D%/packages/patches/python-paste-remove-timing-test.patch	\
   %D%/packages/patches/python-pygit2-disable-network-tests.patch	\
@@ -1020,9 +1043,11 @@ dist_patch_DATA =						\
   %D%/packages/patches/python2-subprocess32-disable-input-test.patch	\
   %D%/packages/patches/python-unittest2-python3-compat.patch	\
   %D%/packages/patches/python-unittest2-remove-argparse.patch	\
+  %D%/packages/patches/python-waitress-fix-tests.patch		\
   %D%/packages/patches/qemu-CVE-2017-15038.patch		\
   %D%/packages/patches/qemu-CVE-2017-15289.patch		\
   %D%/packages/patches/qt4-ldflags.patch			\
+  %D%/packages/patches/qtbase-use-TZDIR.patch			\
   %D%/packages/patches/qtscript-disable-tests.patch		\
   %D%/packages/patches/quagga-reproducible-build.patch          \
   %D%/packages/patches/quassel-fix-tls-check.patch              \
@@ -1031,18 +1056,17 @@ dist_patch_DATA =						\
   %D%/packages/patches/raptor2-heap-overflow.patch		\
   %D%/packages/patches/ratpoison-shell.patch			\
   %D%/packages/patches/rcs-5.9.4-noreturn.patch			\
+  %D%/packages/patches/rct-add-missing-headers.patch		\
   %D%/packages/patches/readline-link-ncurses.patch		\
   %D%/packages/patches/readline-6.2-CVE-2014-2524.patch		\
   %D%/packages/patches/readline-7.0-mingw.patch			\
+  %D%/packages/patches/reposurgeon-add-missing-docbook-files.patch	\
   %D%/packages/patches/reptyr-fix-gcc-7.patch			\
   %D%/packages/patches/ripperx-missing-file.patch		\
   %D%/packages/patches/rpcbind-CVE-2017-8779.patch		\
   %D%/packages/patches/rsem-makefile.patch			\
-  %D%/packages/patches/rsync-CVE-2017-16548.patch			\
-  %D%/packages/patches/rsync-CVE-2017-17433.patch			\
-  %D%/packages/patches/rsync-CVE-2017-17433-fix-tests.patch			\
-  %D%/packages/patches/rsync-CVE-2017-17434-pt1.patch			\
-  %D%/packages/patches/rsync-CVE-2017-17434-pt2.patch			\
+  %D%/packages/patches/rtags-separate-rct.patch			\
+  %D%/packages/patches/ruby-rubygems-276-for-ruby24.patch	\
   %D%/packages/patches/ruby-concurrent-ignore-broken-test.patch	\
   %D%/packages/patches/ruby-concurrent-test-arm.patch		\
   %D%/packages/patches/ruby-rack-ignore-failing-test.patch      \
@@ -1053,13 +1077,13 @@ dist_patch_DATA =						\
   %D%/packages/patches/sdl-libx11-1.6.patch			\
   %D%/packages/patches/seq24-rename-mutex.patch			\
   %D%/packages/patches/shepherd-close-fds.patch			\
+  %D%/packages/patches/shepherd-herd-status-sorted.patch	\
   %D%/packages/patches/shishi-fix-libgcrypt-detection.patch	\
   %D%/packages/patches/slim-session.patch			\
   %D%/packages/patches/slim-config.patch			\
   %D%/packages/patches/slim-sigusr1.patch			\
   %D%/packages/patches/slim-reset.patch				\
   %D%/packages/patches/slim-login.patch				\
-  %D%/packages/patches/slurm-configure-remove-nonfree-contribs.patch \
   %D%/packages/patches/sooperlooper-build-with-wx-30.patch 	\
   %D%/packages/patches/steghide-fixes.patch			\
   %D%/packages/patches/superlu-dist-scotchmetis.patch		\
@@ -1117,7 +1141,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/vsearch-unbundle-cityhash.patch		\
   %D%/packages/patches/vte-CVE-2012-2738-pt1.patch			\
   %D%/packages/patches/vte-CVE-2012-2738-pt2.patch			\
-  %D%/packages/patches/webkitgtk-mitigate-spectre.patch		\
   %D%/packages/patches/weechat-python.patch			\
   %D%/packages/patches/wicd-bitrate-none-fix.patch		\
   %D%/packages/patches/wicd-get-selected-profile-fix.patch	\
@@ -1152,13 +1175,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/xinetd-CVE-2013-4342.patch		\
   %D%/packages/patches/xmodmap-asprintf.patch 			\
   %D%/packages/patches/libyaml-CVE-2014-9130.patch 		\
-  %D%/packages/patches/zathura-plugindir-environment-variable.patch	\
-  %D%/packages/patches/zziplib-CVE-2017-5974.patch		\
-  %D%/packages/patches/zziplib-CVE-2017-5975.patch		\
-  %D%/packages/patches/zziplib-CVE-2017-5976.patch		\
-  %D%/packages/patches/zziplib-CVE-2017-5978.patch		\
-  %D%/packages/patches/zziplib-CVE-2017-5979.patch		\
-  %D%/packages/patches/zziplib-CVE-2017-5981.patch
+  %D%/packages/patches/zathura-plugindir-environment-variable.patch
 
 MISC_DISTRO_FILES =				\
   %D%/packages/ld-wrapper.in