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| author | Tobias Geerinckx-Rice <me@tobias.gr> | 2017-10-20 02:39:56 +0200 |
|---|---|---|
| committer | Tobias Geerinckx-Rice <me@tobias.gr> | 2017-10-21 17:43:40 +0200 |
| commit | 5713bbf157a8e82fbb194519ce3d611de8db075d (patch) | |
| tree | a2bc4a88780b885cf1e8f2a0947aa41b0ab1ea0d /doc | |
| parent | 82bdcfe82141b7696f487a9ff721a834d5ce2347 (diff) | |
| download | gnu-guix-5713bbf157a8e82fbb194519ce3d611de8db075d.tar gnu-guix-5713bbf157a8e82fbb194519ce3d611de8db075d.tar.gz | |
Use HTTPS for bioconductor.org.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/guix.texi | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/doc/guix.texi b/doc/guix.texi index b7f4f88f92..753d3c4827 100644 --- a/doc/guix.texi +++ b/doc/guix.texi @@ -5881,7 +5881,7 @@ dependency graph of the given upstream package recursively and generate package expressions for all those packages that are not yet in Guix. When @code{--archive=bioconductor} is added, metadata is imported from -@uref{http://www.bioconductor.org/, Bioconductor}, a repository of R +@uref{https://www.bioconductor.org/, Bioconductor}, a repository of R packages for for the analysis and comprehension of high-throughput genomic data in bioinformatics. @@ -6236,7 +6236,7 @@ the updater for @uref{http://elpa.gnu.org/, ELPA} packages; @item cran the updater for @uref{http://cran.r-project.org/, CRAN} packages; @item bioconductor -the updater for @uref{http://www.bioconductor.org/, Bioconductor} R packages; +the updater for @uref{https://www.bioconductor.org/, Bioconductor} R packages; @item cpan the updater for @uref{http://www.cpan.org/, CPAN} packages; @item pypi |