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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 12:53:03 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 13:17:52 +0100 |
| commit | 925fcdbb7943f04e1f0a8ac79c236d3543a9945b (patch) | |
| tree | 9e0daf12e66b0ed01c7d3f10fa454ba0adab8512 | |
| parent | 251e08301a514fa035feb17fbb0173f9a0914015 (diff) | |
| download | gnu-guix-925fcdbb7943f04e1f0a8ac79c236d3543a9945b.tar gnu-guix-925fcdbb7943f04e1f0a8ac79c236d3543a9945b.tar.gz | |
gnu: Add r-mast.
* gnu/packages/bioconductor.scm (r-mast): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index adc0e846d2..782b769225 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1932,3 +1932,36 @@ performance metrics for evaluation of ranking and binary classification (assignment) methods. It also contains a Shiny application for interactive exploration of results.") (license license:gpl2+))) + +(define-public r-mast + (package + (name "r-mast") + (version "1.8.2") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MAST" version)) + (sha256 + (base32 + "0rhx655dza0m6yg9jcfz2nmxqahvxx2l91kqgyp7qai0bzz9d9ix")))) + (properties `((upstream-name . "MAST"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-data-table" ,r-data-table) + ("r-ggplot2" ,r-ggplot2) + ("r-plyr" ,r-plyr) + ("r-progress" ,r-progress) + ("r-reshape2" ,r-reshape2) + ("r-s4vectors" ,r-s4vectors) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-stringr" ,r-stringr) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (home-page "https://github.com/RGLab/MAST/") + (synopsis "Model-based analysis of single cell transcriptomics") + (description + "This package provides methods and models for handling zero-inflated +single cell assay data.") + (license license:gpl2+))) |